Wall clock time and date at job start Tue Mar 31 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47185 * 2 1 4 4 C 1.38369 * 119.85045 * 89.99909 * 3 2 1 5 5 C 1.37949 * 120.14493 * 180.02562 * 4 3 2 6 6 C 1.39595 * 119.85239 * 0.02562 * 5 4 3 7 7 C 1.47817 * 120.14422 * 179.97438 * 6 5 4 8 8 O 1.21559 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99705 * 179.97438 * 7 6 5 10 10 C 1.39488 * 119.99867 * 180.02562 * 9 7 6 11 11 N 1.32295 * 119.73006 * 0.29466 * 10 9 7 12 12 C 1.31958 * 121.68732 * 180.28651 * 11 10 9 13 13 C 1.38081 * 120.95559 * 359.70613 * 12 11 10 14 14 C 1.38784 * 119.36019 * 359.97438 * 13 12 11 15 15 C 1.38787 * 118.45039 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50046 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 C 1.39591 * 119.70893 * 0.25171 * 6 5 4 28 28 C 1.37951 * 119.85041 * 359.46961 * 27 6 5 29 29 H 1.09003 * 109.46686 * 299.99959 * 1 2 3 30 30 H 1.09000 * 109.46806 * 59.99931 * 1 2 3 31 31 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47496 * 240.00470 * 2 1 3 33 33 H 1.08997 * 109.47531 * 120.00022 * 2 1 3 34 34 H 1.07991 * 119.92607 * 0.02562 * 4 3 2 35 35 H 1.08008 * 120.07642 * 180.02562 * 5 4 3 36 36 H 0.96999 * 119.99975 * 0.02562 * 9 7 6 37 37 H 1.08000 * 119.51842 * 179.72584 * 12 11 10 38 38 H 1.07997 * 120.31623 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.77497 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 41 41 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 44 44 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.07323 * 179.73806 * 27 6 5 46 46 H 1.07994 * 119.92708 * 180.25211 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0701 1.2001 5 6 2.7213 3.3709 1.2072 6 6 2.9539 4.0322 0.0001 7 6 3.4456 5.4262 0.0001 8 8 3.6486 5.9990 1.0529 9 7 3.6698 6.0617 -1.1671 10 6 4.1342 7.3770 -1.1671 11 7 4.3585 7.9936 -0.0183 12 6 4.7925 9.2389 0.0269 13 6 5.0365 9.9485 -1.1323 14 6 4.8214 9.3397 -2.3608 15 6 4.3657 8.0289 -2.3784 16 8 4.1406 7.3923 -3.5586 17 6 4.3947 8.1331 -4.7540 18 6 4.0872 7.2583 -5.9711 19 6 4.3546 8.0396 -7.2316 20 1 4.7080 9.0583 -7.1708 21 6 4.1470 7.4543 -8.4626 22 7 4.3799 8.1363 -9.5627 23 14 3.5350 5.6925 -8.5679 24 1 2.0502 5.6849 -8.5910 25 1 4.0527 5.0619 -9.8085 26 1 4.0155 4.9303 -7.3874 27 6 2.7148 3.3733 -1.2071 28 6 2.2610 2.0706 -1.2000 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0811 1.5575 2.1332 35 1 2.9005 3.8765 2.1446 36 1 3.5081 5.6045 -2.0071 37 1 4.9597 9.7098 0.9843 38 1 5.3912 10.9674 -1.0833 39 1 5.0051 9.8733 -3.2816 40 1 5.4419 8.4346 -4.7789 41 1 3.7607 9.0195 -4.7739 42 1 4.7214 6.3721 -5.9510 43 1 3.0401 6.9564 -5.9463 44 1 4.2342 7.7244 -10.4287 45 1 2.8888 3.8807 -2.1444 46 1 2.0794 1.5582 -2.1332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069892393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:40 Heat of formation + Delta-G solvation = -29.917668 kcal Electronic energy + Delta-G solvation = -27966.912297 eV Core-core repulsion = 24014.128536 eV Total energy + Delta-G solvation = -3952.783761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18237 -40.98556 -39.69445 -39.05100 -36.13459 -35.40940 -35.06632 -33.09716 -32.62416 -31.97090 -31.06626 -29.97257 -27.33041 -26.04816 -24.68623 -24.07148 -23.54738 -22.84695 -22.21428 -21.19365 -19.92308 -19.37271 -18.62087 -18.25818 -17.37755 -17.24671 -16.62439 -16.41601 -16.32400 -16.27663 -15.91526 -15.77217 -15.28907 -14.96649 -14.88045 -14.73732 -14.57085 -14.31752 -14.22867 -14.09676 -13.81059 -13.41326 -13.34925 -12.86642 -12.75008 -12.71235 -12.23625 -12.20499 -12.00143 -11.93995 -11.83987 -11.70363 -11.65922 -11.49053 -11.42192 -10.80491 -10.46878 -10.26455 -10.01108 -9.78793 -8.91079 -8.33427 -6.40399 -0.34447 0.18365 0.25000 0.36534 1.37916 1.39558 1.51119 1.72447 1.77548 2.06002 2.34376 2.73250 2.90600 3.02227 3.27655 3.58761 3.78399 3.80396 3.81458 3.94021 4.01071 4.09202 4.23082 4.25421 4.28549 4.36923 4.42134 4.51804 4.54049 4.62297 4.66064 4.89091 4.92468 4.98460 5.04492 5.10234 5.11067 5.12156 5.19466 5.28164 5.31909 5.33115 5.41150 5.47732 5.57456 5.59419 5.89051 6.11485 6.16319 6.24612 6.66220 6.85813 7.17344 7.24943 8.82160 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.003200 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.764121 B = 8746.846712 C =12338.204998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.052 4.052 4 C -0.126 4.126 5 C -0.066 4.066 6 C -0.159 4.159 7 C 0.548 3.452 8 O -0.515 6.515 9 N -0.647 5.647 10 C 0.311 3.689 11 N -0.474 5.474 12 C 0.075 3.925 13 C -0.144 4.144 14 C -0.148 4.148 15 C 0.044 3.956 16 O -0.325 6.325 17 C 0.086 3.914 18 C -0.005 4.005 19 C -0.536 4.536 20 H 0.042 0.958 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.947 3.053 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.244 1.244 27 C -0.086 4.086 28 C -0.128 4.128 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.130 0.870 36 H 0.427 0.573 37 H 0.188 0.812 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.269 0.731 45 H 0.135 0.865 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 -12.875 21.777 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.053 4.053 4 C -0.143 4.143 5 C -0.085 4.085 6 C -0.162 4.162 7 C 0.337 3.663 8 O -0.389 6.389 9 N -0.295 5.295 10 C 0.079 3.921 11 N -0.190 5.190 12 C -0.081 4.081 13 C -0.164 4.164 14 C -0.175 4.175 15 C -0.006 4.006 16 O -0.239 6.239 17 C 0.011 3.989 18 C -0.043 4.043 19 C -0.574 4.574 20 H 0.061 0.939 21 C -0.186 4.186 22 N -0.584 5.584 23 Si 0.770 3.230 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.167 1.167 27 C -0.105 4.105 28 C -0.146 4.146 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.267 0.733 37 H 0.204 0.796 38 H 0.193 0.807 39 H 0.173 0.827 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.153 0.847 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.961 -13.196 23.080 27.045 hybrid contribution 0.110 0.420 -1.964 2.011 sum -4.851 -12.776 21.116 25.152 Atomic orbital electron populations 1.21753 0.94025 1.02670 1.02024 1.20692 0.96574 0.90751 1.04449 1.20518 0.94723 0.97323 0.92698 1.21277 1.00059 0.93763 0.99240 1.21335 0.95226 0.94916 0.96986 1.19800 1.07646 0.92716 0.96046 1.18900 0.77386 0.86922 0.83067 1.90811 1.49361 1.67531 1.31229 1.43392 1.64246 1.10977 1.10921 1.17953 0.99835 0.86929 0.87393 1.67684 1.14158 1.12133 1.25003 1.23074 0.96202 0.88443 1.00417 1.22297 1.00264 1.02894 0.90966 1.21912 1.01105 0.92972 1.01470 1.19648 1.01736 0.93604 0.85633 1.85966 1.83033 1.42537 1.12315 1.22784 1.00444 0.95041 0.80620 1.19439 0.97812 0.96229 0.90806 1.21113 1.45597 1.00195 0.90451 0.93943 1.25893 0.94852 1.02824 0.95032 1.70030 1.50227 1.39593 0.98533 0.85696 0.79279 0.79440 0.78545 1.19033 1.20959 1.16743 1.21521 0.96576 0.95655 0.96719 1.21297 0.99954 0.94047 0.99279 0.92726 0.92976 0.90909 0.89672 0.89392 0.82939 0.85195 0.73289 0.79558 0.80698 0.82654 0.91930 0.91916 0.95079 0.95203 0.92200 0.84696 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.62 16 2 C -0.09 -0.81 6.06 29.85 0.18 -0.63 16 3 C -0.05 -0.77 5.14 -19.80 -0.10 -0.87 16 4 C -0.13 -2.00 9.68 22.23 0.22 -1.79 16 5 C -0.07 -1.42 9.60 22.53 0.22 -1.21 16 6 C -0.16 -3.92 5.87 -20.09 -0.12 -4.04 16 7 C 0.55 17.02 7.74 86.78 0.67 17.69 16 8 O -0.52 -19.14 14.60 -3.90 -0.06 -19.19 16 9 N -0.65 -19.59 5.34 -310.65 -1.66 -21.25 16 10 C 0.31 10.27 7.44 133.02 0.99 11.26 16 11 N -0.47 -15.70 7.87 -192.63 -1.52 -17.22 16 12 C 0.08 1.89 11.17 84.64 0.95 2.83 16 13 C -0.14 -3.14 10.10 22.36 0.23 -2.91 16 14 C -0.15 -3.99 9.14 22.53 0.21 -3.78 16 15 C 0.04 1.42 6.72 22.70 0.15 1.57 16 16 O -0.33 -11.14 9.38 -93.25 -0.88 -12.01 16 17 C 0.09 3.15 4.70 71.98 0.34 3.49 16 18 C -0.01 -0.24 4.41 29.85 0.13 -0.10 16 19 C -0.54 -29.06 9.66 25.60 0.25 -28.81 16 20 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 21 C 0.01 0.67 5.47 84.65 0.46 1.13 16 22 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 23 Si 0.95 41.84 27.47 68.60 1.88 43.73 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 27 C -0.09 -1.74 9.54 22.53 0.21 -1.53 16 28 C -0.13 -2.09 9.68 22.23 0.22 -1.87 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 33 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.13 2.90 7.65 -2.91 -0.02 2.87 16 36 H 0.43 11.28 6.08 -92.71 -0.56 10.72 16 37 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.16 3.86 6.44 -2.91 -0.02 3.84 16 40 H 0.06 2.24 7.70 -2.39 -0.02 2.22 16 41 H 0.06 2.24 7.70 -2.39 -0.02 2.22 16 42 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 43 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 44 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 45 H 0.14 2.45 6.41 -2.91 -0.02 2.43 16 46 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -72.94 387.25 4.37 -68.57 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.38 Total: 24.02 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.91 Total: -10.19 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -2.88 Total: -94.92 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.93 Total: -31.21 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.88 Total: 43.73 kcal Total: -72.94 4.37 -68.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069892393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.652 kcal (2) G-P(sol) polarization free energy of solvation -72.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds