Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38268 * 119.94323 * 2 1 4 4 C 1.38139 * 120.05525 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94491 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05258 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99604 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99890 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00592 * 359.97438 * 10 8 7 12 12 C 1.50701 * 109.46950 * 89.99504 * 11 10 8 13 13 H 1.07998 * 120.00146 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00080 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00219 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46983 * 60.00480 * 16 14 12 18 18 H 1.48506 * 109.47020 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47410 * 300.00211 * 16 14 12 20 20 C 1.46500 * 119.99752 * 179.97438 * 10 8 7 21 21 C 1.50703 * 109.47362 * 90.00074 * 20 10 8 22 22 C 1.38221 * 119.61816 * 94.99837 * 21 20 10 23 23 C 1.38624 * 119.16185 * 179.97438 * 22 21 20 24 24 C 1.38673 * 118.41860 * 359.97438 * 23 22 21 25 25 C 1.38179 * 119.16602 * 0.02562 * 24 23 22 26 26 N 1.31852 * 119.61287 * 274.73033 * 21 20 10 27 27 C 1.38722 * 119.88959 * 0.27067 * 5 4 3 28 28 C 1.38150 * 119.94514 * 359.43074 * 27 5 4 29 29 H 1.09004 * 109.47412 * 90.00481 * 1 2 3 30 30 H 1.09004 * 109.47433 * 209.99969 * 1 2 3 31 31 H 1.08997 * 109.47634 * 330.00134 * 1 2 3 32 32 H 1.07994 * 119.97151 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.02930 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 35 35 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 36 36 H 1.08994 * 109.47190 * 209.99788 * 11 10 8 37 37 H 1.08998 * 109.46846 * 330.00306 * 11 10 8 38 38 H 0.97001 * 119.99972 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47310 * 210.00185 * 20 10 8 40 40 H 1.09003 * 109.47191 * 329.99848 * 20 10 8 41 41 H 1.07999 * 120.42161 * 359.96006 * 22 21 20 42 42 H 1.08000 * 120.79135 * 180.02562 * 23 22 21 43 43 H 1.08008 * 120.42030 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.61862 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.03385 * 179.72149 * 27 5 4 46 46 H 1.07998 * 119.97718 * 180.27358 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5785 1.2008 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0002 0.0016 7 6 6.2812 -1.2731 0.0021 8 6 7.7752 -1.0756 0.0026 9 8 8.2387 0.0451 0.0021 10 7 8.5962 -2.1445 0.0037 11 6 8.0363 -3.4983 0.0049 12 6 7.8444 -3.9637 -1.4156 13 1 8.1129 -3.3160 -2.2370 14 6 7.3268 -5.2168 -1.6665 15 7 7.0002 -6.0057 -0.6661 16 14 7.0895 -5.7940 -3.4271 17 1 8.3994 -5.8003 -4.1267 18 1 6.5219 -7.1663 -3.4259 19 1 6.1582 -4.8743 -4.1284 20 6 10.0485 -1.9525 0.0036 21 6 10.5465 -1.8854 1.4244 22 6 11.0269 -3.0288 2.0346 23 6 11.4831 -2.9561 3.3416 24 6 11.4393 -1.7304 3.9887 25 6 10.9455 -0.6302 3.3144 26 7 10.5237 -0.7355 2.0691 27 6 3.5786 -1.2007 -0.0057 28 6 2.1972 -1.1981 0.0000 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6558 2.1326 -0.0004 33 1 4.1172 2.1370 0.0001 34 1 5.9877 -1.8301 0.8918 35 1 5.9890 -1.8301 -0.8881 36 1 8.7198 -4.1736 0.5193 37 1 7.0750 -3.4934 0.5186 38 1 6.6358 -6.8871 -0.8426 39 1 10.5254 -2.7876 -0.5095 40 1 10.2922 -1.0230 -0.5111 41 1 11.0465 -3.9670 1.5000 42 1 11.8644 -3.8331 3.8437 43 1 11.7869 -1.6370 5.0071 44 1 10.9076 0.3279 3.8115 45 1 4.1173 -2.1368 -0.0102 46 1 1.6558 -2.1326 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069950410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -12.257168 kcal Electronic energy + Delta-G solvation = -28748.083612 eV Core-core repulsion = 24796.065668 eV Total energy + Delta-G solvation = -3952.017944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19714 -39.89626 -38.77016 -37.20492 -35.14990 -32.96256 -32.22187 -31.96355 -31.49747 -30.88139 -28.66523 -27.57257 -26.25185 -25.39252 -23.40985 -22.96159 -22.63979 -21.83179 -20.99132 -18.66815 -18.04840 -16.98238 -16.60213 -16.23296 -15.87902 -15.71893 -15.70675 -15.28696 -15.21053 -14.99638 -14.44911 -14.09523 -13.99087 -13.66499 -13.46763 -13.33599 -13.15347 -12.93767 -12.73048 -12.47683 -12.27345 -11.96209 -11.84320 -11.75390 -11.50035 -11.40758 -11.36638 -11.03411 -10.84274 -10.66057 -10.52559 -10.27005 -9.92817 -9.67763 -9.16277 -9.13432 -8.86413 -8.78295 -8.63803 -7.87817 -7.84668 -6.29351 -4.38294 1.26796 1.48439 1.49937 1.56697 3.09643 3.18478 3.23911 3.25633 3.31535 3.89226 3.93502 4.22467 4.37398 4.58293 4.90879 4.95027 4.95725 5.00141 5.03959 5.10606 5.19651 5.23576 5.33280 5.38645 5.46480 5.53033 5.58007 5.64782 5.74130 5.78476 5.81352 5.86010 5.93952 5.97897 6.16658 6.19140 6.33131 6.36633 6.43241 6.55575 6.58159 6.71472 6.89780 6.91941 7.01785 7.36463 7.65305 7.66506 7.91443 8.15847 8.31108 8.67580 8.91874 9.31131 10.76916 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007536 B = 0.003861 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.833095 B = 7250.757346 C =10037.321284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.151 4.151 5 C 0.133 3.867 6 O -0.294 6.294 7 C 0.047 3.953 8 C 0.521 3.479 9 O -0.530 6.530 10 N -0.589 5.589 11 C 0.236 3.764 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.171 3.829 21 C 0.118 3.882 22 C -0.155 4.155 23 C -0.081 4.081 24 C -0.181 4.181 25 C 0.092 3.908 26 N -0.458 5.458 27 C -0.204 4.204 28 C -0.078 4.078 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.135 0.865 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 6.214 6.177 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C -0.102 4.102 4 C -0.170 4.170 5 C 0.087 3.913 6 O -0.207 6.207 7 C -0.031 4.031 8 C 0.308 3.692 9 O -0.407 6.407 10 N -0.322 5.322 11 C 0.116 3.884 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.047 3.953 21 C -0.021 4.021 22 C -0.176 4.176 23 C -0.107 4.107 24 C -0.201 4.201 25 C -0.065 4.065 26 N -0.167 5.167 27 C -0.222 4.222 28 C -0.097 4.097 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.168 0.832 45 H 0.153 0.847 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.632 7.508 5.777 9.832 hybrid contribution 0.137 -1.776 -0.330 1.811 sum -2.495 5.732 5.446 8.291 Atomic orbital electron populations 1.20678 0.91396 1.02300 1.01878 1.19777 0.95971 0.93146 1.04766 1.20760 0.92892 0.97534 0.99041 1.20405 0.93654 0.96368 1.06545 1.19111 0.82546 0.94174 0.95451 1.86101 1.15706 1.30831 1.88015 1.22583 0.91777 0.84200 1.04496 1.19776 0.87537 0.84865 0.77057 1.90683 1.77146 1.23527 1.49348 1.48006 1.04297 1.08193 1.71747 1.19498 0.94713 0.76479 0.97694 1.21477 1.43912 1.00823 0.92164 0.91800 1.24932 0.94797 0.96256 0.97548 1.69910 1.42355 1.09471 1.30949 0.86573 0.78820 0.77876 0.84388 1.19971 1.21098 1.19979 1.20133 0.81429 1.03906 0.89856 1.21889 0.94044 0.88463 0.97727 1.22116 0.99641 0.99940 0.95875 1.21547 0.96868 0.97772 0.94519 1.22100 1.02577 0.94229 1.01222 1.22775 0.94472 0.98538 0.90743 1.67656 1.13118 1.27224 1.08728 1.21447 0.95487 0.97686 1.07629 1.20831 0.93330 0.97589 0.97905 0.91691 0.91890 0.91966 0.85744 0.85255 0.89584 0.87726 0.94253 0.94719 0.92326 0.88403 0.88969 0.84417 0.85103 0.85308 0.83240 0.84719 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.14 -1.71 5.88 -104.60 -0.62 -2.32 16 3 C -0.08 -1.06 9.69 -39.61 -0.38 -1.45 16 4 C -0.15 -2.25 9.99 -39.43 -0.39 -2.65 16 5 C 0.13 2.29 6.69 -39.22 -0.26 2.02 16 6 O -0.29 -5.80 9.67 -39.35 -0.38 -6.19 16 7 C 0.05 0.93 3.77 36.01 0.14 1.06 16 8 C 0.52 11.31 7.75 -10.98 -0.09 11.23 16 9 O -0.53 -12.76 16.08 -14.35 -0.23 -12.99 16 10 N -0.59 -12.22 2.44 -176.43 -0.43 -12.65 16 11 C 0.24 5.27 4.97 -5.19 -0.03 5.24 16 12 C -0.55 -13.32 9.28 -34.44 -0.32 -13.64 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -23.16 13.29 55.43 0.74 -22.43 16 16 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C 0.17 3.17 5.71 -5.19 -0.03 3.14 16 21 C 0.12 2.06 6.36 -82.59 -0.53 1.54 16 22 C -0.16 -2.34 9.72 -39.45 -0.38 -2.72 16 23 C -0.08 -1.03 10.18 -39.28 -0.40 -1.43 16 24 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 25 C 0.09 1.34 11.18 -17.55 -0.20 1.15 16 26 N -0.46 -8.31 10.27 -9.47 -0.10 -8.41 16 27 C -0.20 -3.25 9.04 -39.43 -0.36 -3.60 16 28 C -0.08 -1.08 9.69 -39.60 -0.38 -1.47 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.09 1.58 6.93 -51.93 -0.36 1.22 16 35 H 0.10 2.06 7.51 -51.93 -0.39 1.67 16 36 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.03 0.80 6.44 -51.93 -0.33 0.47 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.10 1.66 7.97 -51.93 -0.41 1.24 16 40 H 0.09 1.78 7.42 -51.93 -0.39 1.39 16 41 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 45 H 0.14 2.17 6.30 -52.48 -0.33 1.83 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -30.60 395.58 -10.22 -40.83 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.40 Total: 6.72 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -4.36 Total: -5.53 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.21 Total: -43.48 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.61 Total: -19.18 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.60 -10.22 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069950410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.571 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds