Wall clock time and date at job start Tue Mar 31 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35907 * 116.99863 * 2 1 4 4 C 1.38498 * 119.98597 * 359.97438 * 3 2 1 5 5 C 1.39489 * 119.79617 * 180.02562 * 4 3 2 6 6 C 1.47849 * 120.11684 * 180.02562 * 5 4 3 7 7 O 1.21554 * 120.00528 * 330.70789 * 6 5 4 8 8 N 1.34783 * 120.00173 * 150.72027 * 6 5 4 9 9 C 1.46500 * 119.99427 * 6.04573 * 8 6 5 10 10 C 1.50700 * 109.46981 * 97.99312 * 9 8 6 11 11 H 1.08003 * 120.00041 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00253 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00183 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99835 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.46941 * 89.99719 * 14 12 10 16 16 H 1.48492 * 109.47334 * 210.00007 * 14 12 10 17 17 H 1.48497 * 109.47150 * 330.00162 * 14 12 10 18 18 C 1.46497 * 120.00290 * 186.05538 * 8 6 5 19 19 C 1.50701 * 109.47323 * 89.99522 * 18 8 6 20 20 C 1.38227 * 119.61781 * 94.72853 * 19 18 8 21 21 C 1.38631 * 119.15813 * 179.75389 * 20 19 18 22 22 C 1.38675 * 118.41921 * 0.50722 * 21 20 19 23 23 C 1.38182 * 119.16274 * 359.73430 * 22 21 20 24 24 N 1.31858 * 119.61324 * 275.00020 * 19 18 8 25 25 C 1.39606 * 119.75977 * 0.27043 * 5 4 3 26 26 C 1.37960 * 119.96891 * 359.47156 * 25 5 4 27 27 C 1.38291 * 120.20390 * 0.53177 * 26 25 5 28 28 C 1.50703 * 119.88280 * 179.69651 * 27 26 25 29 29 H 1.08997 * 109.47444 * 300.00154 * 1 2 3 30 30 H 1.09002 * 109.46623 * 60.00693 * 1 2 3 31 31 H 1.09002 * 109.46676 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.10341 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.47266 * 217.99477 * 9 8 6 34 34 H 1.08996 * 109.47884 * 337.99411 * 9 8 6 35 35 H 0.97003 * 120.00128 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46969 * 209.99560 * 18 8 6 37 37 H 1.08995 * 109.46983 * 329.99217 * 18 8 6 38 38 H 1.07998 * 120.41817 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.78863 * 180.26547 * 21 20 19 40 40 H 1.07997 * 120.41443 * 179.71048 * 22 21 20 41 41 H 1.08002 * 119.61740 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.01500 * 179.70578 * 25 5 4 43 43 H 1.07998 * 119.90207 * 180.25482 * 26 25 5 44 44 H 1.08994 * 109.47189 * 270.02695 * 28 27 26 45 45 H 1.08998 * 109.46724 * 30.02265 * 28 27 26 46 46 H 1.08998 * 109.47157 * 150.02217 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3723 -0.0005 5 6 1.9288 3.6131 -0.0011 6 6 1.1302 4.8573 -0.0011 7 8 0.0290 4.8728 -0.5157 8 7 1.6231 5.9746 0.5693 9 6 2.9994 5.9947 1.0710 10 6 3.8993 6.6315 0.0435 11 1 3.4872 6.9862 -0.8896 12 6 5.2486 6.7624 0.2952 13 7 6.0338 7.3186 -0.6012 14 14 5.9613 6.1496 1.9095 15 1 6.3795 4.7325 1.7597 16 1 7.1385 6.9769 2.2767 17 1 4.9325 6.2519 2.9754 18 6 0.7827 7.1686 0.6878 19 6 0.0385 7.1312 1.9977 20 6 0.5606 7.7834 3.0990 21 6 -0.1345 7.7470 4.2979 22 6 -1.3288 7.0440 4.3473 23 6 -1.7859 6.4122 3.2065 24 7 -1.1005 6.4721 2.0814 25 6 3.3234 3.6757 -0.0068 26 6 4.0655 2.5127 -0.0009 27 6 3.4323 1.2833 -0.0003 28 6 4.2500 0.0175 -0.0008 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2129 2.3174 -0.0005 33 1 3.0405 6.5695 1.9963 34 1 3.3315 4.9743 1.2622 35 1 6.9831 7.4103 -0.4243 36 1 1.4099 8.0594 0.6516 37 1 0.0686 7.1934 -0.1352 38 1 1.4964 8.3174 3.0253 39 1 0.2470 8.2510 5.1736 40 1 -1.8943 6.9907 5.2658 41 1 -2.7150 5.8623 3.2368 42 1 3.8211 4.6341 -0.0120 43 1 5.1444 2.5624 -0.0011 44 1 4.4469 -0.2875 -1.0285 45 1 5.1949 0.1952 0.5128 46 1 3.6998 -0.7707 0.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069951717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:38 Heat of formation + Delta-G solvation = 19.122385 kcal Electronic energy + Delta-G solvation = -29848.279661 eV Core-core repulsion = 25897.622437 eV Total energy + Delta-G solvation = -3950.657225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40913 -39.94129 -38.85968 -36.86244 -35.42629 -33.19641 -32.53776 -32.26710 -31.44365 -29.88159 -28.34980 -27.59216 -27.28498 -25.69356 -23.39489 -22.76053 -22.32339 -21.73965 -21.23122 -19.31159 -17.55316 -17.24176 -16.59414 -16.27081 -16.08274 -15.69478 -15.56604 -15.40860 -15.24184 -15.07259 -14.50719 -14.12147 -13.85195 -13.44345 -13.36521 -13.31046 -13.12437 -12.95157 -12.78590 -12.55376 -12.37241 -11.96448 -11.82765 -11.69593 -11.62847 -11.45788 -11.10494 -10.94398 -10.81153 -10.80921 -10.40402 -10.00008 -9.77122 -9.70339 -9.24243 -9.21074 -8.89343 -8.80430 -8.47851 -7.84781 -7.71428 -6.37002 -4.40153 1.20392 1.33054 1.42706 1.81818 3.08177 3.17256 3.19669 3.36813 3.46195 3.63180 4.13111 4.15864 4.24835 4.53389 4.87998 4.91637 4.93166 5.00518 5.08714 5.16792 5.21665 5.24154 5.27471 5.34954 5.49213 5.56678 5.69554 5.72630 5.76777 5.81933 5.85720 5.91796 6.06434 6.11316 6.19891 6.26399 6.29907 6.34266 6.42128 6.55747 6.63905 6.83136 6.91850 6.95267 7.15858 7.19485 7.32735 7.61792 8.00123 8.21870 8.30908 8.71575 8.87388 9.20176 10.74134 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007526 B = 0.005492 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3719.513329 B = 5096.759555 C = 7692.099689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.098 3.902 4 C -0.151 4.151 5 C -0.098 4.098 6 C 0.562 3.438 7 O -0.545 6.545 8 N -0.579 5.579 9 C 0.179 3.821 10 C -0.546 4.546 11 H 0.085 0.915 12 C 0.083 3.917 13 N -0.877 5.877 14 Si 0.858 3.142 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.261 1.261 18 C 0.167 3.833 19 C 0.119 3.881 20 C -0.157 4.157 21 C -0.081 4.081 22 C -0.181 4.181 23 C 0.093 3.907 24 N -0.461 5.461 25 C -0.133 4.133 26 C -0.103 4.103 27 C -0.100 4.100 28 C -0.104 4.104 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.270 0.730 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.199 0.801 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -7.103 8.268 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.054 3.946 4 C -0.171 4.171 5 C -0.101 4.101 6 C 0.351 3.649 7 O -0.424 6.424 8 N -0.309 5.309 9 C 0.058 3.942 10 C -0.583 4.583 11 H 0.103 0.897 12 C -0.123 4.123 13 N -0.513 5.513 14 Si 0.683 3.317 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.185 1.185 18 C 0.043 3.957 19 C -0.020 4.020 20 C -0.178 4.178 21 C -0.107 4.107 22 C -0.201 4.201 23 C -0.065 4.065 24 N -0.170 5.170 25 C -0.150 4.150 26 C -0.121 4.121 27 C -0.101 4.101 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.168 0.832 42 H 0.215 0.785 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.747 -7.632 7.198 13.659 hybrid contribution 0.619 0.388 1.742 1.889 sum -8.128 -7.245 8.940 14.088 Atomic orbital electron populations 1.23005 0.78867 1.03310 1.01602 1.86005 1.20913 1.26798 1.89496 1.18535 0.91605 0.83837 1.00611 1.21178 1.00057 0.91003 1.04819 1.19717 0.94109 0.92733 1.03580 1.18217 0.85252 0.83324 0.78097 1.90703 1.21114 1.84992 1.45590 1.47624 1.14013 1.10737 1.58485 1.20733 0.78403 0.99436 0.95637 1.21330 0.92157 1.40614 1.04246 0.89700 1.24885 0.96805 0.94227 0.96334 1.69875 1.05441 1.41748 1.34229 0.87111 0.79832 0.80043 0.84672 1.19071 1.20519 1.18546 1.20173 0.93450 0.89312 0.92726 1.21917 0.91255 0.92160 0.96635 1.22134 1.01142 1.01099 0.93376 1.21555 0.94340 0.96925 0.97858 1.22097 0.97814 1.00191 1.00019 1.22768 0.98890 0.96563 0.88265 1.67642 1.06736 1.15288 1.27307 1.23366 0.93346 1.03049 0.95229 1.20977 1.00143 0.90778 1.00187 1.19431 0.90473 0.96299 1.03907 1.20615 0.98750 0.94549 1.02130 0.92870 0.92592 0.88617 0.85051 0.95288 0.92278 0.91991 0.88052 0.88624 0.84392 0.85086 0.85270 0.83231 0.78506 0.85149 0.91445 0.91726 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.72 9.52 -19.45 -0.19 -4.90 16 3 C 0.10 1.67 6.65 -39.27 -0.26 1.41 16 4 C -0.15 -2.79 8.58 -39.02 -0.33 -3.12 16 5 C -0.10 -2.03 5.58 -104.99 -0.59 -2.61 16 6 C 0.56 12.42 7.47 -12.32 -0.09 12.33 16 7 O -0.54 -12.92 16.25 5.32 0.09 -12.83 16 8 N -0.58 -12.18 2.45 -177.55 -0.43 -12.61 16 9 C 0.18 3.87 3.71 -5.19 -0.02 3.85 16 10 C -0.55 -13.50 8.03 -34.44 -0.28 -13.77 16 11 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 12 C 0.08 2.10 5.34 -17.82 -0.10 2.01 16 13 N -0.88 -23.92 13.96 55.43 0.77 -23.15 16 14 Si 0.86 18.55 27.35 -169.99 -4.65 13.90 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 18 C 0.17 3.14 5.77 -5.19 -0.03 3.11 16 19 C 0.12 2.06 6.36 -82.58 -0.53 1.54 16 20 C -0.16 -2.32 9.72 -39.44 -0.38 -2.70 16 21 C -0.08 -0.99 10.18 -39.27 -0.40 -1.39 16 22 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 23 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 24 N -0.46 -8.12 10.27 -9.47 -0.10 -8.22 16 25 C -0.13 -2.70 7.48 -39.17 -0.29 -3.00 16 26 C -0.10 -1.84 9.67 -39.66 -0.38 -2.22 16 27 C -0.10 -1.65 5.90 -104.39 -0.62 -2.27 16 28 C -0.10 -1.35 9.78 36.01 0.35 -1.00 16 29 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 2.31 6.15 -52.49 -0.32 1.99 16 33 H 0.03 0.62 7.19 -51.93 -0.37 0.24 16 34 H 0.06 1.29 3.51 -51.96 -0.18 1.11 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.10 1.77 7.97 -51.93 -0.41 1.36 16 37 H 0.10 1.87 7.35 -51.93 -0.38 1.49 16 38 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.20 4.41 2.86 -52.49 -0.15 4.26 16 43 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 46 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -30.83 380.77 -8.29 -39.12 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.98 Total: 10.93 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.55 Total: -7.98 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.24 Total: -43.98 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.10 Total: -17.73 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.65 Total: 13.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.83 -8.29 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069951717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.245 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds