Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00090 * 2 1 4 4 C 1.52999 * 109.46879 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47012 * 65.00266 * 4 3 2 6 6 C 1.46502 * 120.00053 * 92.61483 * 5 4 3 7 7 C 1.50692 * 109.47208 * 74.25522 * 6 5 4 8 8 H 1.07995 * 120.00152 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00042 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00425 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00144 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47030 * 90.00053 * 11 9 7 13 13 H 1.48493 * 109.47077 * 210.00008 * 11 9 7 14 14 H 1.48496 * 109.46919 * 330.00338 * 11 9 7 15 15 C 1.34776 * 120.00203 * 272.61488 * 5 4 3 16 16 O 1.21556 * 120.00049 * 3.06998 * 15 5 4 17 17 C 1.47852 * 120.00461 * 183.06679 * 15 5 4 18 18 C 1.39596 * 120.14092 * 27.94932 * 17 15 5 19 19 C 1.37930 * 119.85288 * 179.79095 * 18 17 15 20 20 C 1.38384 * 120.14328 * 0.48972 * 19 18 17 21 21 C 1.38338 * 120.29122 * 359.74295 * 20 19 18 22 22 S 1.76198 * 119.92609 * 180.02562 * 21 20 19 23 23 C 1.81406 * 104.44814 * 270.02158 * 22 21 20 24 24 O 1.42106 * 104.27783 * 26.08896 * 22 21 20 25 25 O 1.42100 * 104.27872 * 153.95198 * 22 21 20 26 26 C 1.37978 * 120.14914 * 0.02562 * 21 20 19 27 27 H 1.09010 * 109.46668 * 60.00222 * 1 2 3 28 28 H 1.08994 * 109.47574 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47386 * 300.00200 * 1 2 3 30 30 H 1.09000 * 109.47033 * 59.99880 * 3 2 1 31 31 H 1.08993 * 109.47341 * 299.99408 * 3 2 1 32 32 H 1.09002 * 109.47830 * 305.00525 * 4 3 2 33 33 H 1.08997 * 109.47160 * 184.99556 * 4 3 2 34 34 H 1.09003 * 109.46974 * 314.24854 * 6 5 4 35 35 H 1.09001 * 109.47189 * 194.25811 * 6 5 4 36 36 H 0.96991 * 120.00608 * 179.97438 * 10 9 7 37 37 H 1.08007 * 120.07074 * 0.02562 * 18 17 15 38 38 H 1.08005 * 119.92968 * 180.20907 * 19 18 17 39 39 H 1.07998 * 119.85323 * 179.76534 * 20 19 18 40 40 H 1.08997 * 109.47294 * 59.99808 * 23 22 21 41 41 H 1.09003 * 109.47071 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46969 * 299.99941 * 23 22 21 43 43 H 1.07996 * 120.07580 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.3432 1.4024 -2.3949 7 6 5.6850 2.0396 -2.1412 8 1 6.2118 1.8404 -1.2197 9 6 6.2396 2.8779 -3.0849 10 7 7.4104 3.4345 -2.8633 11 14 5.3281 3.2231 -4.6785 12 1 4.4526 4.4094 -4.5010 13 1 6.3083 3.4891 -5.7618 14 1 4.4987 2.0454 -5.0395 15 6 4.0452 -0.7785 -1.3499 16 8 3.6882 -1.4755 -0.4202 17 6 4.5547 -1.4034 -2.5892 18 6 5.4710 -0.7221 -3.3923 19 6 5.9457 -1.3124 -4.5450 20 6 5.5079 -2.5731 -4.9111 21 6 4.5964 -3.2516 -4.1222 22 16 4.0460 -4.8566 -4.5973 23 6 2.5840 -4.5477 -5.6259 24 8 5.1099 -5.3730 -5.3852 25 8 3.6730 -5.4756 -3.3738 26 6 4.1172 -2.6744 -2.9642 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8509 0.5683 0.8426 33 1 3.9785 2.1764 0.0901 34 1 3.5916 2.1799 -2.5312 35 1 4.3970 0.7877 -3.2935 36 1 7.8008 4.0239 -3.5274 37 1 5.8103 0.2636 -3.1097 38 1 6.6572 -0.7878 -5.1655 39 1 5.8798 -3.0294 -5.8166 40 1 2.8671 -3.9431 -6.4875 41 1 2.1728 -5.4976 -5.9675 42 1 1.8334 -4.0169 -5.0403 43 1 3.4053 -3.2050 -2.3494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -91.627207 kcal Electronic energy + Delta-G solvation = -28503.602216 eV Core-core repulsion = 24450.034724 eV Total energy + Delta-G solvation = -4053.567493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.04039 -38.17207 -37.22881 -37.09489 -35.94769 -35.39467 -32.87309 -31.71994 -30.91632 -29.74586 -29.45802 -27.93435 -26.13376 -23.89685 -23.18463 -22.65939 -21.79796 -19.62887 -18.63195 -17.47045 -17.26035 -16.48982 -16.35387 -16.24753 -15.92700 -15.77184 -15.38417 -15.24393 -14.92966 -14.39381 -14.28333 -13.84744 -13.69626 -13.50882 -13.35491 -13.19556 -12.78743 -12.64376 -12.53464 -12.29576 -12.09582 -12.01284 -11.76808 -11.58974 -11.48199 -11.31645 -11.13462 -11.11609 -10.89728 -10.70045 -10.42625 -10.23196 -9.85902 -9.43666 -9.22612 -9.07004 -8.86411 -8.70897 -7.85200 -6.46505 -4.50867 0.02410 0.98864 1.31136 2.83652 3.00529 3.09003 3.11685 3.22102 3.65994 3.79043 4.04024 4.05506 4.08252 4.15925 4.59556 4.74663 4.80886 4.96772 5.08622 5.24797 5.30515 5.38171 5.44336 5.53419 5.57423 5.58386 5.63417 5.65177 5.75501 5.84353 6.01391 6.06856 6.16654 6.26558 6.33049 6.52804 6.62446 6.70567 7.04588 7.09573 7.27672 7.46810 7.93648 8.25890 8.61816 8.85934 9.10976 10.64308 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.004883 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.385768 B = 5733.274396 C = 7875.600574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.125 3.875 5 N -0.583 5.583 6 C 0.185 3.815 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.875 5.875 11 Si 0.863 3.137 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.260 1.260 15 C 0.559 3.441 16 O -0.535 6.535 17 C -0.149 4.149 18 C -0.044 4.044 19 C -0.156 4.156 20 C -0.011 4.011 21 C -0.684 4.684 22 S 2.503 3.497 23 C -0.652 4.652 24 O -0.942 6.942 25 O -0.937 6.937 26 C 0.026 3.974 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.025 0.975 35 H 0.054 0.946 36 H 0.271 0.729 37 H 0.198 0.802 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 -7.302 -5.484 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.034 4.034 4 C 0.002 3.998 5 N -0.314 5.314 6 C 0.064 3.936 7 C -0.588 4.588 8 H 0.103 0.897 9 C -0.124 4.124 10 N -0.510 5.510 11 Si 0.688 3.312 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.184 1.184 15 C 0.347 3.653 16 O -0.414 6.414 17 C -0.153 4.153 18 C -0.061 4.061 19 C -0.175 4.175 20 C -0.030 4.030 21 C -0.771 4.771 22 S 2.684 3.316 23 C -0.802 4.802 24 O -0.939 6.939 25 O -0.934 6.934 26 C 0.006 3.994 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.214 0.786 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.712 -8.460 -4.836 14.481 hybrid contribution -0.831 1.685 -1.159 2.207 sum -11.543 -6.776 -5.995 14.666 Atomic orbital electron populations 1.22679 0.82597 1.02181 0.99134 1.88167 1.18130 1.27052 1.95145 1.23060 0.95385 0.85191 0.99791 1.21377 0.90969 0.99962 0.87517 1.47622 1.64393 1.05083 1.14261 1.20499 0.96501 0.90961 0.85609 1.21350 1.02378 1.28334 1.06786 0.89653 1.24928 0.94625 0.94584 0.98216 1.69876 1.16135 1.29497 1.35530 0.87039 0.80423 0.80050 0.83671 1.19541 1.20388 1.18418 1.18063 0.78165 0.82315 0.86795 1.90741 1.48933 1.62023 1.39678 1.20181 1.01736 0.95840 0.97556 1.23674 0.89415 1.02065 0.90917 1.21370 1.01915 0.95528 0.98702 1.21063 0.91326 0.93569 0.97022 1.30236 1.14853 1.24916 1.07120 1.04986 0.76563 0.74535 0.75565 1.30244 1.21234 1.12143 1.16530 1.93566 1.51321 1.77195 1.71852 1.93595 1.84325 1.73569 1.41931 1.20925 0.94337 0.92326 0.91836 0.94817 0.90111 0.94688 0.92997 0.93429 0.89942 0.87985 0.95716 0.92895 0.91873 0.78585 0.84709 0.84379 0.85027 0.85281 0.84934 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.28 9.06 -50.94 -0.46 -6.74 16 3 C 0.04 0.67 6.28 37.16 0.23 0.90 16 4 C 0.13 2.21 5.80 -4.04 -0.02 2.19 16 5 N -0.58 -11.70 2.50 -176.17 -0.44 -12.14 16 6 C 0.19 3.83 3.72 -5.20 -0.02 3.81 16 7 C -0.55 -13.12 7.59 -34.45 -0.26 -13.38 16 8 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.08 2.03 5.44 -17.82 -0.10 1.93 16 10 N -0.88 -23.28 13.96 55.43 0.77 -22.51 16 11 Si 0.86 17.95 27.47 -169.99 -4.67 13.28 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 15 C 0.56 11.76 7.11 -12.33 -0.09 11.68 16 16 O -0.54 -12.31 15.12 -10.39 -0.16 -12.47 16 17 C -0.15 -2.88 5.49 -104.97 -0.58 -3.45 16 18 C -0.04 -0.82 7.42 -39.19 -0.29 -1.11 16 19 C -0.16 -2.49 10.03 -39.64 -0.40 -2.89 16 20 C -0.01 -0.15 9.47 -39.49 -0.37 -0.52 16 21 C -0.68 -9.84 5.65 -39.64 -0.22 -10.07 16 22 S 2.50 29.20 5.80 -107.50 -0.62 28.58 16 23 C -0.65 -4.52 10.80 101.05 1.09 -3.43 16 24 O -0.94 -13.20 17.12 -57.54 -0.98 -14.18 16 25 O -0.94 -14.20 17.12 -57.54 -0.98 -15.18 16 26 C 0.03 0.43 9.01 -39.19 -0.35 0.08 16 27 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.52 7.55 -51.93 -0.39 1.13 16 33 H 0.10 1.72 7.86 -51.93 -0.41 1.31 16 34 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 35 H 0.05 1.09 3.30 -51.93 -0.17 0.92 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.20 4.11 3.39 -52.48 -0.18 3.93 16 38 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.14 1.54 7.56 -52.49 -0.40 1.14 16 40 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.15 2.41 7.40 -52.49 -0.39 2.02 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -33.79 367.89 -7.99 -41.78 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.72 Total: 6.81 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.27 Total: -12.77 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.33 Total: -34.65 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.59 Total: -48.57 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.67 Total: 13.28 kcal Atomic # 16 Polarization: 29.20 SS G_CDS: -0.62 Total: 28.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.79 -7.99 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.843 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds