Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00090 * 2 1 4 4 C 1.52999 * 109.46879 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47012 * 65.00266 * 4 3 2 6 6 C 1.46502 * 120.00053 * 92.61483 * 5 4 3 7 7 C 1.50692 * 109.47208 * 74.25522 * 6 5 4 8 8 H 1.07995 * 120.00152 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00042 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00425 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00144 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47030 * 90.00053 * 11 9 7 13 13 H 1.48493 * 109.47077 * 210.00008 * 11 9 7 14 14 H 1.48496 * 109.46919 * 330.00338 * 11 9 7 15 15 C 1.34776 * 120.00203 * 272.61488 * 5 4 3 16 16 O 1.21556 * 120.00049 * 3.06998 * 15 5 4 17 17 C 1.47852 * 120.00461 * 183.06679 * 15 5 4 18 18 C 1.39596 * 120.14092 * 27.94932 * 17 15 5 19 19 C 1.37930 * 119.85288 * 179.79095 * 18 17 15 20 20 C 1.38384 * 120.14328 * 0.48972 * 19 18 17 21 21 C 1.38338 * 120.29122 * 359.74295 * 20 19 18 22 22 S 1.76198 * 119.92609 * 180.02562 * 21 20 19 23 23 C 1.81406 * 104.44814 * 270.02158 * 22 21 20 24 24 O 1.42106 * 104.27783 * 26.08896 * 22 21 20 25 25 O 1.42100 * 104.27872 * 153.95198 * 22 21 20 26 26 C 1.37978 * 120.14914 * 0.02562 * 21 20 19 27 27 H 1.09010 * 109.46668 * 60.00222 * 1 2 3 28 28 H 1.08994 * 109.47574 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47386 * 300.00200 * 1 2 3 30 30 H 1.09000 * 109.47033 * 59.99880 * 3 2 1 31 31 H 1.08993 * 109.47341 * 299.99408 * 3 2 1 32 32 H 1.09002 * 109.47830 * 305.00525 * 4 3 2 33 33 H 1.08997 * 109.47160 * 184.99556 * 4 3 2 34 34 H 1.09003 * 109.46974 * 314.24854 * 6 5 4 35 35 H 1.09001 * 109.47189 * 194.25811 * 6 5 4 36 36 H 0.96991 * 120.00608 * 179.97438 * 10 9 7 37 37 H 1.08007 * 120.07074 * 0.02562 * 18 17 15 38 38 H 1.08005 * 119.92968 * 180.20907 * 19 18 17 39 39 H 1.07998 * 119.85323 * 179.76534 * 20 19 18 40 40 H 1.08997 * 109.47294 * 59.99808 * 23 22 21 41 41 H 1.09003 * 109.47071 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46969 * 299.99941 * 23 22 21 43 43 H 1.07996 * 120.07580 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.3432 1.4024 -2.3949 7 6 5.6850 2.0396 -2.1412 8 1 6.2118 1.8404 -1.2197 9 6 6.2396 2.8779 -3.0849 10 7 7.4104 3.4345 -2.8633 11 14 5.3281 3.2231 -4.6785 12 1 4.4526 4.4094 -4.5010 13 1 6.3083 3.4891 -5.7618 14 1 4.4987 2.0454 -5.0395 15 6 4.0452 -0.7785 -1.3499 16 8 3.6882 -1.4755 -0.4202 17 6 4.5547 -1.4034 -2.5892 18 6 5.4710 -0.7221 -3.3923 19 6 5.9457 -1.3124 -4.5450 20 6 5.5079 -2.5731 -4.9111 21 6 4.5964 -3.2516 -4.1222 22 16 4.0460 -4.8566 -4.5973 23 6 2.5840 -4.5477 -5.6259 24 8 5.1099 -5.3730 -5.3852 25 8 3.6730 -5.4756 -3.3738 26 6 4.1172 -2.6744 -2.9642 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8509 0.5683 0.8426 33 1 3.9785 2.1764 0.0901 34 1 3.5916 2.1799 -2.5312 35 1 4.3970 0.7877 -3.2935 36 1 7.8008 4.0239 -3.5274 37 1 5.8103 0.2636 -3.1097 38 1 6.6572 -0.7878 -5.1655 39 1 5.8798 -3.0294 -5.8166 40 1 2.8671 -3.9431 -6.4875 41 1 2.1728 -5.4976 -5.9675 42 1 1.8334 -4.0169 -5.0403 43 1 3.4053 -3.2050 -2.3494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071140988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -116.271236 kcal Electronic energy + Delta-G solvation = -28504.670861 eV Core-core repulsion = 24450.034724 eV Total energy + Delta-G solvation = -4054.636138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52066 -39.49684 -38.51798 -38.12427 -37.05139 -36.95013 -34.67328 -33.08437 -32.20132 -30.99549 -30.22161 -29.59034 -27.22068 -25.26017 -24.68548 -24.13340 -23.14830 -20.94881 -19.76196 -19.12050 -18.75694 -17.87967 -17.64342 -17.19853 -17.06359 -16.88431 -16.74781 -16.66310 -16.20501 -15.97140 -15.54780 -15.20244 -15.02828 -14.80297 -14.36203 -14.24934 -13.94946 -13.91314 -13.77927 -13.48125 -13.26755 -13.13134 -13.05947 -13.01419 -12.78740 -12.69105 -12.59162 -12.33955 -12.02684 -11.98602 -11.90550 -11.74203 -11.55488 -10.88562 -10.83212 -10.53790 -10.22233 -10.09536 -9.46773 -8.35798 -6.45084 -0.84789 -0.29681 -0.00168 1.37603 1.40573 1.49288 1.74770 1.91756 2.16900 2.29523 2.55320 2.94820 2.97291 3.04495 3.18603 3.57039 3.81438 4.04238 4.13801 4.14330 4.15685 4.19464 4.27710 4.37777 4.43972 4.51701 4.53104 4.55686 4.61446 4.70765 4.80492 4.81554 4.83620 4.93139 4.94898 4.98893 5.29812 5.31515 5.35906 5.64112 5.78363 6.09820 6.34199 6.57289 6.64993 7.15820 7.29764 8.78939 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.004883 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.385768 B = 5733.274396 C = 7875.600574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.051 3.949 4 C 0.118 3.882 5 N -0.586 5.586 6 C 0.194 3.806 7 C -0.544 4.544 8 H 0.038 0.962 9 C 0.035 3.965 10 N -0.927 5.927 11 Si 0.925 3.075 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.235 1.235 15 C 0.551 3.449 16 O -0.566 6.566 17 C -0.172 4.172 18 C -0.067 4.067 19 C -0.157 4.157 20 C 0.000 4.000 21 C -0.678 4.678 22 S 2.510 3.490 23 C -0.621 4.621 24 O -0.967 6.967 25 O -0.979 6.979 26 C 0.016 3.984 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.272 0.728 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -8.214 -8.808 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.315 5.315 6 C 0.073 3.927 7 C -0.582 4.582 8 H 0.056 0.944 9 C -0.167 4.167 10 N -0.565 5.565 11 Si 0.747 3.253 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.158 1.158 15 C 0.340 3.660 16 O -0.447 6.447 17 C -0.176 4.176 18 C -0.085 4.085 19 C -0.176 4.176 20 C -0.019 4.019 21 C -0.762 4.762 22 S 2.692 3.308 23 C -0.775 4.775 24 O -0.964 6.964 25 O -0.977 6.977 26 C -0.003 4.003 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.190 0.810 38 H 0.173 0.827 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.249 -9.345 -8.108 18.127 hybrid contribution -0.049 1.833 -0.110 1.837 sum -13.298 -7.512 -8.217 17.344 Atomic orbital electron populations 1.22867 0.80340 1.03138 1.00632 1.88118 1.20714 1.27917 1.95459 1.22974 0.93114 0.85117 1.01444 1.21512 0.93364 0.99366 0.86229 1.47716 1.64030 1.05032 1.14756 1.20374 0.94804 0.91206 0.86354 1.21321 1.03503 1.28379 1.04962 0.94372 1.25692 0.95144 0.94123 1.01731 1.70022 1.18295 1.31038 1.37139 0.86039 0.79406 0.80798 0.79043 1.18962 1.20301 1.15761 1.18475 0.77730 0.82460 0.87293 1.90701 1.50530 1.62561 1.40874 1.20151 1.03058 0.97093 0.97315 1.23378 0.90853 1.01610 0.92653 1.21629 1.01783 0.96423 0.97718 1.21498 0.90003 0.92575 0.97831 1.30764 1.13899 1.25764 1.05740 1.04893 0.77803 0.72820 0.75267 1.30019 1.17014 1.14729 1.15758 1.93533 1.54121 1.77033 1.71701 1.93548 1.85095 1.73969 1.45060 1.20958 0.94800 0.91623 0.92949 0.93602 0.89540 0.92787 0.90159 0.92714 0.91563 0.87873 0.94404 0.91675 0.91820 0.81014 0.82724 0.80689 0.82206 0.82187 0.83364 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -13.68 9.06 -133.96 -1.21 -14.89 16 3 C 0.05 1.54 6.28 71.98 0.45 1.99 16 4 C 0.12 4.33 5.80 86.38 0.50 4.84 16 5 N -0.59 -24.30 2.50 -829.57 -2.07 -26.38 16 6 C 0.19 8.08 3.72 85.63 0.32 8.40 16 7 C -0.54 -26.97 7.59 25.60 0.19 -26.77 16 8 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 9 C 0.03 1.73 5.44 84.65 0.46 2.19 16 10 N -0.93 -51.15 13.96 21.45 0.30 -50.86 16 11 Si 0.93 36.33 27.47 68.60 1.88 38.21 16 12 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 13 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 14 H -0.23 -8.19 6.54 99.48 0.65 -7.54 16 15 C 0.55 24.13 7.11 86.79 0.62 24.74 16 16 O -0.57 -27.24 15.12 11.13 0.17 -27.07 16 17 C -0.17 -6.77 5.49 -20.09 -0.11 -6.88 16 18 C -0.07 -2.55 7.42 22.52 0.17 -2.38 16 19 C -0.16 -4.73 10.03 22.23 0.22 -4.51 16 20 C 0.00 -0.01 9.47 22.33 0.21 0.20 16 21 C -0.68 -18.16 5.65 22.23 0.13 -18.03 16 22 S 2.51 51.84 5.80 -56.49 -0.33 51.51 16 23 C -0.62 -5.18 10.80 113.37 1.22 -3.95 16 24 O -0.97 -24.39 17.12 -127.65 -2.18 -26.58 16 25 O -0.98 -28.69 17.12 -127.65 -2.19 -30.88 16 26 C 0.02 0.55 9.01 22.53 0.20 0.76 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 2.61 7.55 -2.39 -0.02 2.59 16 33 H 0.10 3.65 7.86 -2.39 -0.02 3.64 16 34 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 35 H 0.07 2.63 3.30 -2.39 -0.01 2.63 16 36 H 0.27 14.02 8.31 -92.72 -0.77 13.25 16 37 H 0.17 7.40 3.39 -2.91 -0.01 7.39 16 38 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.18 3.12 7.56 -2.91 -0.02 3.10 16 40 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.15 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.14 4.80 7.40 -2.91 -0.02 4.77 16 Total: -1.00 -78.39 367.89 1.18 -77.22 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.98 Total: 27.25 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.83 Total: -17.54 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -1.77 Total: -77.23 kcal Atomic # 8 Polarization: -94.00 SS G_CDS: -5.42 Total: -99.42 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 1.88 Total: 38.21 kcal Atomic # 16 Polarization: 51.84 SS G_CDS: -0.33 Total: 51.51 kcal Total: -78.39 1.18 -77.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.056 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds