Wall clock time and date at job start Tue Mar 31 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47214 * 270.00069 * 3 2 1 5 5 H 1.48503 * 109.47170 * 29.99832 * 3 2 1 6 6 H 1.48502 * 109.47263 * 149.99588 * 3 2 1 7 7 C 1.38800 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99420 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00086 * 180.02562 * 7 2 1 10 10 C 1.76197 * 99.99989 * 180.02562 * 9 7 2 11 11 N 1.30950 * 118.46159 * 0.24778 * 10 9 7 12 12 C 1.34787 * 121.65034 * 180.28499 * 11 10 9 13 13 C 1.39836 * 121.53267 * 179.71756 * 12 11 10 14 14 C 1.36601 * 119.81529 * 180.02562 * 13 12 11 15 15 C 1.38996 * 120.96651 * 359.97438 * 14 13 12 16 16 Br 1.89104 * 119.71561 * 180.02562 * 15 14 13 17 17 C 1.37864 * 120.56801 * 359.97438 * 15 14 13 18 18 C 1.39385 * 119.40303 * 359.97438 * 17 15 14 19 19 C 1.46966 * 121.85833 * 179.97438 * 18 17 15 20 20 O 1.21729 * 121.25337 * 0.04369 * 19 18 17 21 21 N 1.35338 * 117.48477 * 180.02562 * 19 18 17 22 22 N 1.36607 * 119.78802 * 179.97438 * 21 19 18 23 23 H 0.97000 * 120.00159 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.09827 * 0.02562 * 13 12 11 25 25 H 1.07993 * 119.51429 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.30297 * 180.02562 * 17 15 14 27 27 H 1.00901 * 110.99866 * 179.97438 * 22 21 19 28 28 H 1.00896 * 110.99345 * 303.94827 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0093 -1.2020 0.0005 8 1 1.4693 -2.1373 0.0005 9 16 3.7713 -1.2020 0.0012 10 6 4.0773 -2.9372 0.0010 11 7 3.0520 -3.7517 -0.0046 12 6 3.2118 -5.0900 0.0005 13 6 2.1151 -5.9575 0.0005 14 6 2.3177 -7.3084 0.0063 15 6 3.6024 -7.8389 0.0118 16 35 3.8419 -9.7147 0.0191 17 6 4.7035 -7.0094 0.0110 18 6 4.5194 -5.6278 0.0040 19 6 5.6542 -4.6939 0.0033 20 8 6.8031 -5.0962 0.0081 21 7 5.3737 -3.3700 -0.0032 22 7 6.3928 -2.4603 -0.0036 23 1 -0.4850 0.8400 -0.0004 24 1 1.1107 -5.5607 -0.0042 25 1 1.4672 -7.9739 0.0058 26 1 5.6998 -7.4262 0.0149 27 1 6.0352 -1.5167 -0.0091 28 1 7.0101 -2.6087 0.7806 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071768763.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:32 Heat of formation + Delta-G solvation = 45.693682 kcal Electronic energy + Delta-G solvation = -18533.241529 eV Core-core repulsion = 15336.703663 eV Total energy + Delta-G solvation = -3196.537866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 340.957 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29924 -38.59296 -37.27498 -35.16575 -32.99148 -31.71478 -31.27314 -29.40774 -28.76367 -26.18347 -24.65400 -23.88486 -21.85655 -19.45187 -18.97634 -18.28653 -17.21649 -16.36427 -15.69843 -15.60245 -15.31834 -15.06871 -14.71620 -14.25044 -13.81331 -13.29273 -13.25024 -12.89349 -12.27126 -11.94523 -11.79522 -11.59819 -11.49260 -11.47696 -10.51199 -10.45113 -10.31793 -10.06782 -9.60496 -9.53434 -9.39428 -9.15343 -8.93990 -8.23490 -7.33095 -6.75859 -4.59147 0.54234 0.94478 1.60973 1.73142 2.34067 2.43044 2.80288 2.90770 2.94349 3.01613 3.62482 3.85276 4.12745 4.37783 4.64774 4.68172 4.80650 4.94658 5.14964 5.38126 5.53506 5.86441 5.98708 6.26926 6.34026 6.36539 6.69911 6.96395 7.03464 7.49130 8.06651 8.17702 8.40721 8.59410 10.30993 Molecular weight = 340.96amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.003392 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.060509 B = 8252.723206 C = 9466.924818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.103 3.897 3 Si 0.842 3.158 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.240 1.240 7 C -0.523 4.523 8 H 0.138 0.862 9 S 0.082 5.918 10 C 0.332 3.668 11 N -0.515 5.515 12 C 0.212 3.788 13 C -0.119 4.119 14 C -0.042 4.042 15 C -0.142 4.142 16 Br -0.060 7.060 17 C 0.004 3.996 18 C -0.222 4.222 19 C 0.563 3.437 20 O -0.515 6.515 21 N -0.377 5.377 22 N -0.594 5.594 23 H 0.280 0.720 24 H 0.147 0.853 25 H 0.136 0.864 26 H 0.140 0.860 27 H 0.370 0.630 28 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -10.795 1.429 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.111 4.111 3 Si 0.666 3.334 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.164 1.164 7 C -0.671 4.671 8 H 0.155 0.845 9 S 0.324 5.676 10 C -0.034 4.034 11 N -0.244 5.244 12 C 0.091 3.909 13 C -0.141 4.141 14 C -0.064 4.064 15 C -0.223 4.223 16 Br 0.025 6.975 17 C -0.017 4.017 18 C -0.234 4.234 19 C 0.355 3.645 20 O -0.389 6.389 21 N -0.190 5.190 22 N -0.226 5.226 23 H 0.091 0.909 24 H 0.164 0.836 25 H 0.154 0.846 26 H 0.158 0.842 27 H 0.190 0.810 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.825 -10.596 0.737 12.625 hybrid contribution -0.300 0.441 0.879 1.028 sum 6.525 -10.155 1.617 12.178 Atomic orbital electron populations 1.69828 1.05764 1.28630 1.43144 1.24783 0.94726 0.98612 0.92963 0.87041 0.81582 0.84204 0.80602 1.18230 1.18442 1.16438 1.22851 0.85265 1.00138 1.58802 0.84471 1.82761 1.14826 0.89141 1.80921 1.25904 0.80182 1.03632 0.93720 1.69063 1.25443 1.01698 1.28185 1.18971 0.91399 0.90304 0.90267 1.20586 0.98784 0.91265 1.03424 1.20807 0.95302 0.95262 0.94996 1.21383 0.95725 0.89765 1.15449 1.96633 1.97827 1.04954 1.98082 1.20759 0.98445 0.90718 0.91798 1.20326 0.92596 0.94137 1.16316 1.18079 0.89466 0.79625 0.77293 1.90815 1.21346 1.76692 1.50050 1.45430 1.03077 1.06108 1.64369 1.60266 1.08433 1.03773 1.50095 0.90868 0.83572 0.84601 0.84219 0.81048 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.99 13.96 55.49 0.77 -21.22 15 2 C 0.10 2.53 5.50 -17.47 -0.10 2.43 15 3 Si 0.84 17.11 27.74 -169.99 -4.71 12.40 15 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.26 -5.21 7.11 56.52 0.40 -4.80 15 6 H -0.24 -4.50 6.74 56.52 0.38 -4.12 15 7 C -0.52 -12.88 9.77 30.94 0.30 -12.57 15 8 H 0.14 3.74 6.71 -52.49 -0.35 3.39 15 9 S 0.08 1.63 17.44 -107.50 -1.87 -0.24 15 10 C 0.33 6.65 7.84 -88.49 -0.69 5.95 15 11 N -0.52 -10.82 8.28 -10.89 -0.09 -10.91 15 12 C 0.21 3.96 6.61 -84.78 -0.56 3.40 15 13 C -0.12 -1.88 9.98 -39.58 -0.40 -2.27 15 14 C -0.04 -0.57 9.68 -39.89 -0.39 -0.96 15 15 C -0.14 -1.99 6.22 -39.44 -0.25 -2.23 15 16 Br -0.06 -0.71 33.68 -68.01 -2.29 -3.00 15 17 C 0.00 0.07 9.40 -39.29 -0.37 -0.30 15 18 C -0.22 -4.01 5.90 -104.74 -0.62 -4.62 15 19 C 0.56 10.73 7.74 -12.47 -0.10 10.63 15 20 O -0.51 -10.31 16.94 5.16 0.09 -10.22 15 21 N -0.38 -6.89 3.52 -13.06 -0.05 -6.94 15 22 N -0.59 -9.06 9.94 60.35 0.60 -8.46 15 23 H 0.28 6.72 8.31 -40.82 -0.34 6.39 15 24 H 0.15 2.20 8.06 -52.49 -0.42 1.78 15 25 H 0.14 1.46 8.06 -52.49 -0.42 1.03 15 26 H 0.14 2.08 7.83 -52.49 -0.41 1.67 15 27 H 0.37 5.15 6.41 -173.63 -1.11 4.04 15 28 H 0.36 4.66 9.03 -181.36 -1.64 3.02 15 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -27.33 285.50 -9.93 -37.25 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.52 Total: 7.59 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.16 Total: -0.55 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 1.24 Total: -47.53 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -4.71 Total: 12.40 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.87 Total: -0.24 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.29 Total: -3.00 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.33 -9.93 -37.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071768763.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.946 kcal (2) G-P(sol) polarization free energy of solvation -27.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds