Wall clock time and date at job start Tue Mar 31 2020 04:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39866 * 126.04134 * 2 1 4 4 N 1.30842 * 108.20775 * 179.97438 * 3 2 1 5 5 N 1.40083 * 108.19779 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.03207 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47040 * 303.59665 * 6 5 4 8 8 H 1.09002 * 109.99716 * 52.35908 * 7 6 5 9 9 C 1.54335 * 109.99263 * 291.32859 * 7 6 5 10 10 C 1.55160 * 103.01698 * 218.66344 * 9 7 6 11 11 C 1.54913 * 101.58204 * 35.30521 * 10 9 7 12 12 N 1.47017 * 109.88148 * 173.45715 * 7 6 5 13 13 C 1.34779 * 125.65085 * 298.39355 * 12 7 6 14 14 O 1.21546 * 120.00363 * 176.30620 * 13 12 7 15 15 C 1.47885 * 119.99507 * 356.58365 * 13 12 7 16 16 C 1.39921 * 120.03196 * 355.14061 * 15 13 12 17 17 C 1.38327 * 120.36060 * 179.71818 * 16 15 13 18 18 C 1.37747 * 120.41041 * 0.55252 * 17 16 15 19 19 C 1.40743 * 120.04295 * 359.72751 * 18 17 16 20 20 C 1.41442 * 120.17935 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99944 * 159.46149 * 20 19 18 22 22 C 1.39934 * 119.99638 * 339.45347 * 20 19 18 23 23 N 1.30827 * 120.00215 * 330.32681 * 22 20 19 24 24 Si 1.86802 * 119.99849 * 150.32721 * 22 20 19 25 25 H 1.48503 * 109.47411 * 94.98481 * 24 22 20 26 26 H 1.48497 * 109.47199 * 214.98624 * 24 22 20 27 27 H 1.48500 * 109.47216 * 334.98949 * 24 22 20 28 28 C 1.38999 * 120.02367 * 175.40927 * 15 13 12 29 29 C 1.34945 * 107.93105 * 0.25965 * 5 4 3 30 30 H 1.09003 * 109.46699 * 89.98098 * 1 2 3 31 31 H 1.08998 * 109.47599 * 209.97512 * 1 2 3 32 32 H 1.08994 * 109.47404 * 329.98815 * 1 2 3 33 33 H 1.08007 * 125.89544 * 359.96743 * 3 2 1 34 34 H 1.08999 * 109.47128 * 183.60322 * 6 5 4 35 35 H 1.08998 * 109.47204 * 63.59948 * 6 5 4 36 36 H 1.08993 * 110.85279 * 100.19289 * 9 7 6 37 37 H 1.08997 * 110.66667 * 337.04227 * 9 7 6 38 38 H 1.09000 * 111.00418 * 277.22978 * 10 9 7 39 39 H 1.09001 * 110.99861 * 153.37894 * 10 9 7 40 40 H 1.09002 * 110.36643 * 204.14967 * 11 10 9 41 41 H 1.08996 * 110.36460 * 81.82788 * 11 10 9 42 42 H 1.08008 * 119.81391 * 359.97438 * 16 15 13 43 43 H 1.08001 * 119.78932 * 180.25741 * 17 16 15 44 44 H 1.08001 * 119.97779 * 179.74246 * 18 17 16 45 45 H 0.96998 * 119.99680 * 180.02562 * 23 22 20 46 46 H 1.08002 * 120.19822 * 359.97438 * 28 15 13 47 47 H 1.07999 * 126.12892 * 179.73502 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5755 0.7302 0.0006 5 7 3.5844 -0.6706 0.0015 6 6 4.7746 -1.5248 0.0029 7 6 5.6552 -1.1745 -1.1983 8 1 5.8516 -0.1025 -1.2165 9 6 4.9560 -1.5995 -2.5069 10 6 6.1275 -2.1378 -3.3702 11 6 7.0275 -2.7982 -2.2961 12 7 6.9234 -1.9140 -1.1211 13 6 7.8371 -1.8059 -0.1362 14 8 8.8225 -2.5174 -0.1404 15 6 7.6376 -0.8256 0.9530 16 6 6.5547 0.0594 0.9089 17 6 6.3583 0.9751 1.9269 18 6 7.2324 1.0343 2.9898 19 6 8.3307 0.1561 3.0486 20 6 9.2304 0.2147 4.1384 21 1 9.8574 -0.6343 4.3673 22 6 9.3082 1.3729 4.9200 23 7 9.0511 2.5399 4.3875 24 14 9.7790 1.2526 6.7237 25 1 11.2389 1.4818 6.8706 26 1 9.0364 2.2788 7.4986 27 1 9.4362 -0.0986 7.2357 28 6 8.5289 -0.7789 2.0186 29 6 2.3032 -1.0942 -0.0043 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5140 33 1 1.9950 2.1578 -0.0005 34 1 4.4718 -2.5699 -0.0612 35 1 5.3356 -1.3648 0.9236 36 1 4.4826 -0.7444 -2.9893 37 1 4.2255 -2.3854 -2.3151 38 1 6.6504 -1.3230 -3.8709 39 1 5.7746 -2.8751 -4.0914 40 1 8.0594 -2.8473 -2.6438 41 1 6.6599 -3.7954 -2.0542 42 1 5.8661 0.0245 0.0776 43 1 5.5170 1.6511 1.8856 44 1 7.0747 1.7548 3.7788 45 1 9.1054 3.3427 4.9292 46 1 9.3684 -1.4574 2.0547 47 1 1.9724 -2.1223 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071869842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:53 Heat of formation + Delta-G solvation = 106.591162 kcal Electronic energy + Delta-G solvation = -29805.262266 eV Core-core repulsion = 25956.116634 eV Total energy + Delta-G solvation = -3849.145632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36674 -40.15108 -37.54407 -36.98619 -34.32729 -33.47960 -31.87492 -31.55724 -30.29583 -29.68581 -29.15871 -26.84106 -25.37179 -25.09927 -23.68724 -21.83378 -21.34907 -20.67290 -20.53440 -20.08272 -18.97833 -17.73571 -16.98639 -16.04551 -15.89514 -15.80801 -15.18040 -14.82301 -14.59791 -14.16200 -14.04771 -13.64614 -13.49982 -13.41975 -13.13729 -13.04185 -12.96121 -12.76930 -12.57546 -12.47893 -12.14648 -12.02848 -11.86598 -11.72394 -11.33025 -11.23435 -11.15022 -11.00811 -10.90746 -10.58039 -10.41990 -10.28554 -9.99999 -9.39323 -9.31851 -9.16058 -9.05150 -8.52264 -8.20071 -7.57554 -7.50862 -6.92564 -4.36387 2.01008 2.14639 2.49837 2.76624 2.89216 3.04669 3.07173 3.17967 3.32335 3.75677 3.89072 4.33465 4.38549 4.46417 4.57823 4.80031 4.85826 4.98342 5.08156 5.17355 5.26261 5.37067 5.41001 5.53407 5.55362 5.60415 5.64423 5.67617 5.77416 5.82014 5.89319 5.94001 6.00040 6.05311 6.17653 6.27605 6.44895 6.49522 6.78754 6.90364 6.96835 7.05723 7.10805 7.13878 7.39561 7.64864 7.80355 7.85588 7.90454 7.97210 8.17665 8.52717 8.70147 8.79486 8.86518 10.04072 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003861 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.832107 B = 7251.058784 C = 9407.792872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.248 4.248 3 C 0.040 3.960 4 N -0.274 5.274 5 N -0.355 5.355 6 C 0.095 3.905 7 C 0.119 3.881 8 H 0.111 0.889 9 C -0.127 4.127 10 C -0.132 4.132 11 C 0.106 3.894 12 N -0.616 5.616 13 C 0.579 3.421 14 O -0.545 6.545 15 C -0.124 4.124 16 C -0.254 4.254 17 C -0.095 4.095 18 C -0.157 4.157 19 C 0.101 3.899 20 C -0.466 4.466 21 H 0.082 0.918 22 C 0.085 3.915 23 N -0.774 5.774 24 Si 0.899 3.101 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.159 4.159 29 C 0.050 3.950 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.178 0.822 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.141 0.859 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.283 0.717 46 H 0.105 0.895 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 -5.148 -10.867 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.260 4.260 3 C -0.146 4.146 4 N -0.095 5.095 5 N -0.137 5.137 6 C -0.026 4.026 7 C 0.014 3.986 8 H 0.128 0.872 9 C -0.165 4.165 10 C -0.170 4.170 11 C -0.017 4.017 12 N -0.352 5.352 13 C 0.373 3.627 14 O -0.423 6.423 15 C -0.126 4.126 16 C -0.272 4.272 17 C -0.114 4.114 18 C -0.177 4.177 19 C 0.099 3.901 20 C -0.494 4.494 21 H 0.100 0.900 22 C -0.136 4.136 23 N -0.397 5.397 24 Si 0.723 3.277 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.182 1.182 28 C -0.180 4.180 29 C -0.097 4.097 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.195 0.805 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.078 -5.015 -10.757 17.661 hybrid contribution -0.638 -0.118 0.902 1.111 sum -13.716 -5.133 -9.855 17.652 Atomic orbital electron populations 1.19999 0.89745 1.01859 1.01084 1.20053 0.96775 0.91975 1.17176 1.23784 0.90142 0.99631 1.01032 1.77475 1.20746 0.88501 1.22812 1.48451 1.04906 1.04766 1.55589 1.23027 0.84524 0.91936 1.03133 1.22186 0.83933 0.98682 0.93751 0.87190 1.22735 0.97507 1.01612 0.94622 1.22794 0.96213 1.00901 0.97127 1.22169 1.00948 0.93422 0.85124 1.48392 1.19440 1.43504 1.23866 1.18750 0.80732 0.82582 0.80607 1.90689 1.29343 1.45596 1.76703 1.19281 0.99257 0.98662 0.95450 1.22030 1.01200 1.00956 1.03045 1.20606 0.98323 0.97583 0.94850 1.21367 0.95053 1.02231 0.99007 1.17505 0.91636 0.90181 0.90791 1.19545 1.19795 0.99852 1.10201 0.89998 1.25913 0.92718 0.94429 1.00503 1.69903 1.33579 0.98878 1.37388 0.86450 0.79251 0.79699 0.82332 1.19437 1.19895 1.18157 1.21105 0.99386 1.03368 0.94125 1.22265 0.84350 0.99794 1.03248 0.92530 0.92508 0.92092 0.80489 0.89242 0.85080 0.90048 0.90820 0.90435 0.89857 0.90278 0.91764 0.84222 0.88714 0.87199 0.90596 0.87700 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.37 36.01 0.37 -0.18 16 2 C -0.25 -2.73 6.10 -105.05 -0.64 -3.37 16 3 C 0.04 0.50 11.96 -17.36 -0.21 0.30 16 4 N -0.27 -4.14 11.42 30.63 0.35 -3.79 16 5 N -0.36 -4.79 3.51 -61.36 -0.22 -5.00 16 6 C 0.10 1.33 4.87 -4.04 -0.02 1.31 16 7 C 0.12 1.66 2.27 -66.95 -0.15 1.51 16 8 H 0.11 1.80 5.95 -51.93 -0.31 1.49 16 9 C -0.13 -1.30 6.33 -24.89 -0.16 -1.46 16 10 C -0.13 -1.26 7.09 -24.58 -0.17 -1.43 16 11 C 0.11 1.35 6.89 -2.53 -0.02 1.33 16 12 N -0.62 -10.04 3.06 -167.82 -0.51 -10.55 16 13 C 0.58 12.25 7.63 -12.31 -0.09 12.16 16 14 O -0.55 -13.00 16.62 5.33 0.09 -12.91 16 15 C -0.12 -2.84 5.40 -105.04 -0.57 -3.41 16 16 C -0.25 -5.41 6.31 -38.92 -0.25 -5.65 16 17 C -0.10 -2.19 10.01 -39.73 -0.40 -2.59 16 18 C -0.16 -4.03 8.77 -38.82 -0.34 -4.37 16 19 C 0.10 2.71 5.59 -106.87 -0.60 2.12 16 20 C -0.47 -12.44 8.98 -37.73 -0.34 -12.78 16 21 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 22 C 0.09 2.13 4.87 -17.34 -0.08 2.04 16 23 N -0.77 -19.84 11.48 55.55 0.64 -19.20 16 24 Si 0.90 18.48 29.65 -169.99 -5.04 13.44 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 28 C -0.16 -4.10 9.34 -38.44 -0.36 -4.45 16 29 C 0.05 0.56 11.36 -17.22 -0.20 0.36 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16 35 H 0.13 2.30 4.47 -51.93 -0.23 2.07 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.66 7.74 -51.93 -0.40 0.25 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 2.59 1.02 -57.50 -0.06 2.53 16 43 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 44 H 0.11 2.90 6.31 -52.49 -0.33 2.57 16 45 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 46 H 0.10 2.74 7.65 -52.49 -0.40 2.34 16 47 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -30.87 377.76 -9.56 -40.43 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.35 Total: 10.47 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.21 Total: -18.57 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.26 Total: -38.55 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.04 Total: 13.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.87 -9.56 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071869842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.018 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds