Wall clock time and date at job start Tue Mar 31 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39866 * 126.04134 * 2 1 4 4 N 1.30842 * 108.20775 * 179.97438 * 3 2 1 5 5 N 1.40083 * 108.19779 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.03207 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47040 * 303.59665 * 6 5 4 8 8 H 1.09002 * 109.99716 * 52.35908 * 7 6 5 9 9 C 1.54335 * 109.99263 * 291.32859 * 7 6 5 10 10 C 1.55160 * 103.01698 * 218.66344 * 9 7 6 11 11 C 1.54913 * 101.58204 * 35.30521 * 10 9 7 12 12 N 1.47017 * 109.88148 * 173.45715 * 7 6 5 13 13 C 1.34779 * 125.65085 * 298.39355 * 12 7 6 14 14 O 1.21546 * 120.00363 * 176.30620 * 13 12 7 15 15 C 1.47885 * 119.99507 * 356.58365 * 13 12 7 16 16 C 1.39921 * 120.03196 * 355.14061 * 15 13 12 17 17 C 1.38327 * 120.36060 * 179.71818 * 16 15 13 18 18 C 1.37747 * 120.41041 * 0.55252 * 17 16 15 19 19 C 1.40743 * 120.04295 * 359.72751 * 18 17 16 20 20 C 1.41442 * 120.17935 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99944 * 159.46149 * 20 19 18 22 22 C 1.39934 * 119.99638 * 339.45347 * 20 19 18 23 23 N 1.30827 * 120.00215 * 330.32681 * 22 20 19 24 24 Si 1.86802 * 119.99849 * 150.32721 * 22 20 19 25 25 H 1.48503 * 109.47411 * 94.98481 * 24 22 20 26 26 H 1.48497 * 109.47199 * 214.98624 * 24 22 20 27 27 H 1.48500 * 109.47216 * 334.98949 * 24 22 20 28 28 C 1.38999 * 120.02367 * 175.40927 * 15 13 12 29 29 C 1.34945 * 107.93105 * 0.25965 * 5 4 3 30 30 H 1.09003 * 109.46699 * 89.98098 * 1 2 3 31 31 H 1.08998 * 109.47599 * 209.97512 * 1 2 3 32 32 H 1.08994 * 109.47404 * 329.98815 * 1 2 3 33 33 H 1.08007 * 125.89544 * 359.96743 * 3 2 1 34 34 H 1.08999 * 109.47128 * 183.60322 * 6 5 4 35 35 H 1.08998 * 109.47204 * 63.59948 * 6 5 4 36 36 H 1.08993 * 110.85279 * 100.19289 * 9 7 6 37 37 H 1.08997 * 110.66667 * 337.04227 * 9 7 6 38 38 H 1.09000 * 111.00418 * 277.22978 * 10 9 7 39 39 H 1.09001 * 110.99861 * 153.37894 * 10 9 7 40 40 H 1.09002 * 110.36643 * 204.14967 * 11 10 9 41 41 H 1.08996 * 110.36460 * 81.82788 * 11 10 9 42 42 H 1.08008 * 119.81391 * 359.97438 * 16 15 13 43 43 H 1.08001 * 119.78932 * 180.25741 * 17 16 15 44 44 H 1.08001 * 119.97779 * 179.74246 * 18 17 16 45 45 H 0.96998 * 119.99680 * 180.02562 * 23 22 20 46 46 H 1.08002 * 120.19822 * 359.97438 * 28 15 13 47 47 H 1.07999 * 126.12892 * 179.73502 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5755 0.7302 0.0006 5 7 3.5844 -0.6706 0.0015 6 6 4.7746 -1.5248 0.0029 7 6 5.6552 -1.1745 -1.1983 8 1 5.8516 -0.1025 -1.2165 9 6 4.9560 -1.5995 -2.5069 10 6 6.1275 -2.1378 -3.3702 11 6 7.0275 -2.7982 -2.2961 12 7 6.9234 -1.9140 -1.1211 13 6 7.8371 -1.8059 -0.1362 14 8 8.8225 -2.5174 -0.1404 15 6 7.6376 -0.8256 0.9530 16 6 6.5547 0.0594 0.9089 17 6 6.3583 0.9751 1.9269 18 6 7.2324 1.0343 2.9898 19 6 8.3307 0.1561 3.0486 20 6 9.2304 0.2147 4.1384 21 1 9.8574 -0.6343 4.3673 22 6 9.3082 1.3729 4.9200 23 7 9.0511 2.5399 4.3875 24 14 9.7790 1.2526 6.7237 25 1 11.2389 1.4818 6.8706 26 1 9.0364 2.2788 7.4986 27 1 9.4362 -0.0986 7.2357 28 6 8.5289 -0.7789 2.0186 29 6 2.3032 -1.0942 -0.0043 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5140 33 1 1.9950 2.1578 -0.0005 34 1 4.4718 -2.5699 -0.0612 35 1 5.3356 -1.3648 0.9236 36 1 4.4826 -0.7444 -2.9893 37 1 4.2255 -2.3854 -2.3151 38 1 6.6504 -1.3230 -3.8709 39 1 5.7746 -2.8751 -4.0914 40 1 8.0594 -2.8473 -2.6438 41 1 6.6599 -3.7954 -2.0542 42 1 5.8661 0.0245 0.0776 43 1 5.5170 1.6511 1.8856 44 1 7.0747 1.7548 3.7788 45 1 9.1054 3.3427 4.9292 46 1 9.3684 -1.4574 2.0547 47 1 1.9724 -2.1223 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071869842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:52 Heat of formation + Delta-G solvation = 89.638168 kcal Electronic energy + Delta-G solvation = -29805.997403 eV Core-core repulsion = 25956.116634 eV Total energy + Delta-G solvation = -3849.880769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43370 -41.44823 -39.14795 -38.68054 -35.90762 -34.82855 -33.20660 -32.43641 -31.83661 -31.36285 -30.60831 -27.75079 -27.21858 -26.14216 -25.05909 -23.13425 -22.95034 -21.99029 -21.67450 -21.19342 -20.41749 -19.34612 -18.10668 -17.73182 -17.41895 -16.91056 -16.82398 -16.38707 -15.90118 -15.50066 -15.19440 -15.09042 -15.00465 -14.57985 -14.32977 -14.27871 -14.13530 -13.97091 -13.84094 -13.56880 -13.39404 -13.35571 -13.13220 -12.96556 -12.74553 -12.63992 -12.57597 -12.22731 -12.10047 -12.05831 -11.94138 -11.71390 -11.30474 -11.13310 -10.96917 -10.88058 -10.34873 -9.89914 -9.50172 -9.44551 -9.06308 -8.81671 -6.38012 0.28908 0.90116 1.10751 1.33494 1.41246 1.45175 1.51544 1.97816 2.01605 2.04651 2.16695 2.62618 3.33275 3.39274 3.44158 3.62478 3.83015 3.91523 4.05983 4.09453 4.11867 4.27314 4.36948 4.45344 4.57205 4.60555 4.71541 4.72352 4.77439 4.82803 4.88261 4.91699 5.00134 5.03710 5.04166 5.08717 5.11484 5.19078 5.22094 5.34371 5.37587 5.42600 5.45029 5.76430 5.89962 5.92075 6.01129 6.13270 6.23011 6.36390 6.53814 6.80662 6.87488 6.91288 7.07375 8.18281 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003861 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.832107 B = 7251.058784 C = 9407.792872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.251 4.251 3 C 0.035 3.965 4 N -0.325 5.325 5 N -0.366 5.366 6 C 0.101 3.899 7 C 0.114 3.886 8 H 0.084 0.916 9 C -0.112 4.112 10 C -0.118 4.118 11 C 0.095 3.905 12 N -0.608 5.608 13 C 0.576 3.424 14 O -0.582 6.582 15 C -0.128 4.128 16 C -0.227 4.227 17 C -0.097 4.097 18 C -0.173 4.173 19 C 0.077 3.923 20 C -0.509 4.509 21 H 0.073 0.927 22 C 0.048 3.952 23 N -0.806 5.806 24 Si 0.976 3.024 25 H -0.260 1.260 26 H -0.259 1.259 27 H -0.260 1.260 28 C -0.190 4.190 29 C 0.052 3.948 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.195 0.805 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.176 0.824 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.294 0.706 46 H 0.086 0.914 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.322 -6.040 -12.540 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.262 4.262 3 C -0.151 4.151 4 N -0.146 5.146 5 N -0.148 5.148 6 C -0.021 4.021 7 C 0.010 3.990 8 H 0.101 0.899 9 C -0.150 4.150 10 C -0.155 4.155 11 C -0.026 4.026 12 N -0.341 5.341 13 C 0.368 3.632 14 O -0.463 6.463 15 C -0.131 4.131 16 C -0.246 4.246 17 C -0.115 4.115 18 C -0.193 4.193 19 C 0.075 3.925 20 C -0.537 4.537 21 H 0.091 0.909 22 C -0.170 4.170 23 N -0.430 5.430 24 Si 0.796 3.204 25 H -0.184 1.184 26 H -0.183 1.183 27 H -0.184 1.184 28 C -0.211 4.211 29 C -0.093 4.093 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.211 0.789 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.192 0.808 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -16.378 -5.895 -12.479 21.417 hybrid contribution 0.201 0.158 1.248 1.274 sum -16.177 -5.736 -11.231 20.512 Atomic orbital electron populations 1.20048 0.87556 1.02649 1.02108 1.20443 0.98234 0.91296 1.16265 1.24239 0.89860 1.01087 0.99880 1.77405 1.22435 0.89693 1.25079 1.48363 1.05391 1.04273 1.56783 1.22748 0.84798 0.93897 1.00691 1.22254 0.83233 0.96929 0.96540 0.89857 1.22704 0.97714 1.02714 0.91884 1.22803 0.94855 1.01459 0.96420 1.22540 1.01490 0.94071 0.84483 1.48346 1.19044 1.43401 1.23275 1.18391 0.81318 0.82086 0.81376 1.90658 1.31080 1.46814 1.77792 1.19570 0.98839 0.99244 0.95467 1.22502 1.00329 0.98632 1.03089 1.20793 0.98162 0.98086 0.94481 1.21341 0.95735 1.02350 0.99828 1.17765 0.92387 0.90960 0.91388 1.19747 1.21156 1.00726 1.12034 0.90911 1.26747 0.92189 0.93384 1.04687 1.69912 1.34098 0.99680 1.39289 0.85304 0.79366 0.79694 0.76065 1.18447 1.18311 1.18392 1.21079 1.00291 1.04084 0.95634 1.22880 0.83159 1.01506 1.01769 0.91309 0.91373 0.91716 0.78856 0.85988 0.89365 0.89252 0.88192 0.90702 0.86022 0.91500 0.89706 0.80752 0.87282 0.88406 0.89525 0.89599 0.78215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.37 71.24 0.74 -0.08 16 2 C -0.25 -4.75 6.10 -20.14 -0.12 -4.87 16 3 C 0.04 0.81 11.96 85.23 1.02 1.83 16 4 N -0.32 -9.39 11.42 -57.02 -0.65 -10.04 16 5 N -0.37 -9.04 3.51 -348.05 -1.22 -10.26 16 6 C 0.10 2.63 4.87 86.38 0.42 3.05 16 7 C 0.11 2.98 2.27 45.35 0.10 3.08 16 8 H 0.08 2.65 5.95 -2.39 -0.01 2.64 16 9 C -0.11 -1.82 6.33 31.79 0.20 -1.62 16 10 C -0.12 -1.75 7.09 31.99 0.23 -1.52 16 11 C 0.10 2.19 6.89 86.86 0.60 2.79 16 12 N -0.61 -19.27 3.06 -803.14 -2.46 -21.73 16 13 C 0.58 25.12 7.63 86.80 0.66 25.78 16 14 O -0.58 -28.98 16.62 -3.86 -0.06 -29.05 16 15 C -0.13 -6.20 5.40 -20.13 -0.11 -6.31 16 16 C -0.23 -9.99 6.31 22.70 0.14 -9.85 16 17 C -0.10 -4.63 10.01 22.17 0.22 -4.41 16 18 C -0.17 -9.38 8.77 22.77 0.20 -9.18 16 19 C 0.08 4.44 5.59 -21.32 -0.12 4.32 16 20 C -0.51 -29.02 8.98 23.47 0.21 -28.81 16 21 H 0.07 4.10 7.99 -2.91 -0.02 4.08 16 22 C 0.05 2.50 4.87 85.25 0.42 2.92 16 23 N -0.81 -42.86 11.48 21.82 0.25 -42.61 16 24 Si 0.98 38.98 29.65 68.60 2.03 41.02 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 28 C -0.19 -10.55 9.34 23.01 0.21 -10.34 16 29 C 0.05 0.98 11.36 83.54 0.95 1.93 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.12 2.37 7.92 -2.39 -0.02 2.35 16 35 H 0.09 3.09 4.47 -2.39 -0.01 3.08 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.18 7.74 -2.39 -0.02 1.16 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.73 8.07 -2.39 -0.02 1.71 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.18 6.48 1.02 -7.62 -0.01 6.47 16 43 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 44 H 0.10 5.45 6.31 -2.91 -0.02 5.44 16 45 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 46 H 0.09 4.94 7.65 -2.91 -0.02 4.92 16 47 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -73.88 377.76 4.85 -69.03 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.99 Total: 34.94 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 5.97 Total: -31.30 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -4.08 Total: -84.64 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.06 Total: -29.05 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.02 kcal Total: -73.88 4.85 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071869842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.664 kcal (2) G-P(sol) polarization free energy of solvation -73.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds