Wall clock time and date at job start Tue Mar 31 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39861 * 126.03577 * 2 1 4 4 N 1.30845 * 108.20137 * 179.81955 * 3 2 1 5 5 N 1.40089 * 108.20243 * 0.43567 * 4 3 2 6 6 C 1.46496 * 126.03588 * 179.70024 * 5 4 3 7 7 C 1.53004 * 109.47173 * 305.02492 * 6 5 4 8 8 H 1.08997 * 109.87161 * 55.44170 * 7 6 5 9 9 C 1.54319 * 109.88174 * 176.45619 * 7 6 5 10 10 C 1.55156 * 102.94441 * 141.60830 * 9 7 6 11 11 C 1.54902 * 101.57948 * 324.49921 * 10 9 7 12 12 N 1.47023 * 109.88106 * 294.26382 * 7 6 5 13 13 C 1.34777 * 125.65015 * 61.61819 * 12 7 6 14 14 O 1.21552 * 119.99831 * 357.18873 * 13 12 7 15 15 C 1.47879 * 120.00068 * 177.18257 * 13 12 7 16 16 C 1.39925 * 120.02548 * 19.93891 * 15 13 12 17 17 C 1.38325 * 120.35818 * 179.97438 * 16 15 13 18 18 C 1.37760 * 120.41585 * 0.02562 * 17 16 15 19 19 C 1.40754 * 120.03200 * 359.97438 * 18 17 16 20 20 C 1.41444 * 120.17076 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00298 * 24.56949 * 20 19 18 22 22 C 1.39936 * 119.99430 * 204.57561 * 20 19 18 23 23 N 1.30828 * 120.00491 * 17.10300 * 22 20 19 24 24 Si 1.86810 * 119.99603 * 197.10194 * 22 20 19 25 25 H 1.48496 * 109.47097 * 60.00203 * 24 22 20 26 26 H 1.48497 * 109.46801 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46927 * 299.99870 * 24 22 20 28 28 C 1.39002 * 120.02833 * 199.66265 * 15 13 12 29 29 C 1.34952 * 107.92493 * 359.72086 * 5 4 3 30 30 H 1.08998 * 109.46879 * 269.68924 * 1 2 3 31 31 H 1.09005 * 109.47136 * 149.69414 * 1 2 3 32 32 H 1.08999 * 109.47477 * 29.69472 * 1 2 3 33 33 H 1.08004 * 125.90396 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47450 * 65.02637 * 6 5 4 35 35 H 1.08998 * 109.46823 * 185.02306 * 6 5 4 36 36 H 1.08999 * 110.72300 * 259.97489 * 9 7 6 37 37 H 1.09002 * 110.72252 * 23.24745 * 9 7 6 38 38 H 1.09004 * 111.00320 * 82.57169 * 10 9 7 39 39 H 1.08991 * 111.00971 * 206.41962 * 10 9 7 40 40 H 1.09005 * 110.37090 * 155.84627 * 11 10 9 41 41 H 1.09001 * 110.36890 * 278.05352 * 11 10 9 42 42 H 1.07994 * 119.81627 * 0.02562 * 16 15 13 43 43 H 1.07999 * 119.79502 * 179.97438 * 17 16 15 44 44 H 1.07993 * 119.98489 * 180.02562 * 18 17 16 45 45 H 0.96996 * 119.99757 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.19699 * 0.02562 * 28 15 13 47 47 H 1.07996 * 126.12546 * 180.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5754 0.7303 0.0039 5 7 3.5844 -0.6706 -0.0036 6 6 4.7746 -1.5247 -0.0086 7 6 5.6713 -1.1432 -1.1882 8 1 5.9111 -0.0809 -1.1428 9 6 6.9697 -1.9764 -1.1514 10 6 7.2304 -2.2800 -2.6505 11 6 5.7879 -2.4507 -3.1885 12 7 4.9903 -1.4517 -2.4541 13 6 3.8291 -0.9113 -2.8735 14 8 3.2289 -0.1315 -2.1598 15 6 3.2852 -1.2667 -4.2019 16 6 3.7114 -2.4350 -4.8432 17 6 3.2068 -2.7744 -6.0856 18 6 2.2796 -1.9664 -6.7063 19 6 1.8390 -0.7872 -6.0765 20 6 0.8868 0.0443 -6.7109 21 1 0.2109 -0.3704 -7.4441 22 6 0.8205 1.4044 -6.3885 23 7 1.8215 1.9806 -5.7740 24 14 -0.6974 2.3973 -6.8355 25 1 -1.8867 1.8117 -6.1665 26 1 -0.5191 3.8022 -6.3886 27 1 -0.8925 2.3675 -8.3073 28 6 2.3459 -0.4435 -4.8120 29 6 2.3031 -1.0942 -0.0059 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3634 -0.8873 -0.5186 32 1 -0.3634 0.8927 -0.5091 33 1 1.9950 2.1578 -0.0004 34 1 5.3231 -1.3891 0.9235 35 1 4.4728 -2.5677 -0.1040 36 1 7.7888 -1.3955 -0.7275 37 1 6.8199 -2.8995 -0.5914 38 1 7.7324 -1.4437 -3.1369 39 1 7.8030 -3.1998 -2.7690 40 1 5.7559 -2.2488 -4.2593 41 1 5.4224 -3.4567 -2.9820 42 1 4.4376 -3.0756 -4.3651 43 1 3.5424 -3.6781 -6.5725 44 1 1.8900 -2.2383 -7.6761 45 1 1.7753 2.9233 -5.5503 46 1 2.0111 0.4572 -4.3189 47 1 1.9724 -2.1223 -0.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071869843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:57 Heat of formation + Delta-G solvation = 105.818171 kcal Electronic energy + Delta-G solvation = -30573.243766 eV Core-core repulsion = 26724.064615 eV Total energy + Delta-G solvation = -3849.179151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.74521 -39.57860 -37.54844 -36.49839 -33.89602 -33.37552 -31.60585 -31.02491 -30.02069 -29.37780 -29.31523 -26.51074 -25.31371 -24.69958 -23.56017 -21.82903 -20.97373 -20.64415 -20.18071 -19.62499 -18.56848 -17.51798 -16.71196 -16.20214 -15.96236 -15.41296 -14.81397 -14.73084 -14.29679 -13.86580 -13.79340 -13.45079 -13.26599 -13.02588 -12.90114 -12.84076 -12.61719 -12.53855 -12.48483 -12.13783 -12.08465 -11.68836 -11.57981 -11.40065 -11.27668 -11.15843 -11.11541 -11.03108 -10.84772 -10.49827 -10.31699 -9.92262 -9.85732 -9.55188 -9.17374 -8.83963 -8.78176 -8.02801 -7.60235 -7.48795 -7.45593 -6.76995 -4.38593 2.31517 2.59384 2.85098 3.08886 3.10506 3.11617 3.18810 3.43309 3.58055 3.90457 3.94223 4.48761 4.50685 4.62151 4.74742 4.95335 5.11183 5.26770 5.30081 5.36268 5.46289 5.58756 5.61544 5.63545 5.69305 5.79799 5.83160 5.91091 6.00321 6.07354 6.10972 6.11797 6.18096 6.34027 6.46362 6.51717 6.65274 6.78289 6.83120 7.02027 7.09183 7.25032 7.41124 7.42805 7.69956 7.72576 7.84058 7.96085 8.12246 8.22148 8.43229 8.54000 8.83745 8.87325 9.06999 10.17524 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004948 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.302373 B = 5657.766425 C = 7546.669226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.229 4.229 3 C 0.059 3.941 4 N -0.270 5.270 5 N -0.350 5.350 6 C 0.132 3.868 7 C 0.127 3.873 8 H 0.084 0.916 9 C -0.125 4.125 10 C -0.136 4.136 11 C 0.095 3.905 12 N -0.620 5.620 13 C 0.568 3.432 14 O -0.507 6.507 15 C -0.120 4.120 16 C -0.241 4.241 17 C -0.101 4.101 18 C -0.215 4.215 19 C 0.100 3.900 20 C -0.461 4.461 21 H 0.079 0.921 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.909 3.091 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.266 1.266 28 C -0.091 4.091 29 C 0.062 3.938 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.284 0.716 46 H 0.132 0.868 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -7.417 10.345 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.240 4.240 3 C -0.128 4.128 4 N -0.090 5.090 5 N -0.132 5.132 6 C 0.008 3.992 7 C 0.022 3.978 8 H 0.102 0.898 9 C -0.164 4.164 10 C -0.174 4.174 11 C -0.028 4.028 12 N -0.357 5.357 13 C 0.360 3.640 14 O -0.381 6.381 15 C -0.123 4.123 16 C -0.261 4.261 17 C -0.119 4.119 18 C -0.235 4.235 19 C 0.097 3.903 20 C -0.490 4.490 21 H 0.097 0.903 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.733 3.267 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.111 4.111 29 C -0.084 4.084 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.149 0.851 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.992 -6.423 10.800 14.891 hybrid contribution -1.378 0.087 -0.571 1.495 sum 6.613 -6.336 10.229 13.730 Atomic orbital electron populations 1.19962 0.90548 1.01931 1.00032 1.19758 0.96029 0.92154 1.16100 1.23250 0.90259 0.98709 1.00592 1.76949 1.21167 0.88487 1.22429 1.47910 1.04170 1.04550 1.56538 1.21989 0.85240 0.92915 0.99043 1.21826 0.91086 1.00740 0.84132 0.89758 1.22629 0.96024 1.00004 0.97702 1.22860 0.97007 1.02507 0.95033 1.22750 0.89332 0.91914 0.98776 1.48442 1.23478 1.44221 1.19540 1.18665 0.78604 0.79885 0.86850 1.90879 1.57839 1.33910 1.55493 1.19434 1.01512 0.97935 0.93404 1.21150 1.07130 0.99585 0.98208 1.20451 0.98035 0.98079 0.95331 1.21098 1.02965 0.99579 0.99817 1.17584 0.90933 0.91208 0.90572 1.19538 1.15730 0.92745 1.21010 0.90285 1.25927 0.96657 0.98530 0.93252 1.69776 1.28749 1.12885 1.29575 0.86348 0.82151 0.78422 0.79739 1.18695 1.20234 1.19035 1.21568 0.95990 0.99306 0.94225 1.21778 0.84563 0.98792 1.03234 0.93298 0.92757 0.92286 0.81766 0.89931 0.89395 0.89997 0.90542 0.90560 0.90012 0.88444 0.91801 0.87115 0.89176 0.88869 0.90520 0.85073 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.37 36.01 0.37 -0.63 16 2 C -0.23 -4.07 5.56 -105.05 -0.58 -4.65 16 3 C 0.06 1.10 10.93 -17.37 -0.19 0.91 16 4 N -0.27 -5.24 10.95 30.62 0.34 -4.90 16 5 N -0.35 -5.97 2.09 -61.37 -0.13 -6.10 16 6 C 0.13 1.72 5.95 -4.04 -0.02 1.69 16 7 C 0.13 1.74 3.17 -66.95 -0.21 1.53 16 8 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 9 C -0.13 -1.15 6.48 -24.90 -0.16 -1.31 16 10 C -0.14 -1.33 7.08 -24.59 -0.17 -1.51 16 11 C 0.10 1.27 4.98 -2.53 -0.01 1.26 16 12 N -0.62 -10.38 3.06 -164.11 -0.50 -10.89 16 13 C 0.57 12.33 7.47 -12.31 -0.09 12.23 16 14 O -0.51 -11.95 9.25 5.32 0.05 -11.90 16 15 C -0.12 -2.84 5.80 -105.04 -0.61 -3.44 16 16 C -0.24 -5.07 8.07 -38.92 -0.31 -5.38 16 17 C -0.10 -2.16 10.01 -39.72 -0.40 -2.56 16 18 C -0.21 -5.17 9.78 -38.81 -0.38 -5.55 16 19 C 0.10 2.66 5.57 -106.87 -0.60 2.07 16 20 C -0.46 -12.29 9.05 -37.73 -0.34 -12.63 16 21 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 22 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 23 N -0.79 -21.05 10.94 55.55 0.61 -20.44 16 24 Si 0.91 19.10 29.59 -169.99 -5.03 14.07 16 25 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 C -0.09 -2.44 8.23 -38.44 -0.32 -2.75 16 29 C 0.06 1.06 9.92 -17.22 -0.17 0.89 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.17 2.74 8.06 -52.48 -0.42 2.31 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.48 5.79 -51.93 -0.30 1.18 16 41 H 0.06 0.77 7.43 -51.93 -0.39 0.39 16 42 H 0.11 1.94 3.88 -52.49 -0.20 1.74 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 46 H 0.13 3.85 5.87 -52.49 -0.31 3.54 16 47 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -31.80 373.16 -9.98 -41.78 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.64 Total: 10.76 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -4.29 Total: -18.01 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.31 Total: -42.33 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.05 Total: -11.90 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.80 -9.98 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071869843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.595 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds