Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47589 * 340.33267 * 3 2 1 5 5 C 1.36946 * 120.00139 * 265.95728 * 4 3 2 6 6 H 1.07993 * 120.00599 * 198.25296 * 5 4 3 7 7 C 1.38987 * 120.00017 * 18.53422 * 5 4 3 8 8 N 1.31408 * 120.00031 * 26.31992 * 7 5 4 9 9 Si 1.86796 * 119.99885 * 206.32957 * 7 5 4 10 10 H 1.48498 * 109.47449 * 89.99366 * 9 7 5 11 11 H 1.48504 * 109.46982 * 209.99610 * 9 7 5 12 12 H 1.48502 * 109.47172 * 329.99327 * 9 7 5 13 13 C 1.34778 * 119.99909 * 85.94968 * 4 3 2 14 14 O 1.21657 * 119.99971 * 174.41325 * 13 4 3 15 15 C 1.47173 * 119.99934 * 354.41954 * 13 4 3 16 16 C 1.35299 * 123.15151 * 174.54653 * 15 13 4 17 17 S 1.70940 * 108.82223 * 179.97438 * 16 15 13 18 18 C 1.70768 * 91.13614 * 0.28972 * 17 16 15 19 19 C 1.50702 * 124.71321 * 179.84977 * 18 17 16 20 20 C 1.52999 * 109.46995 * 269.97309 * 19 18 17 21 21 C 1.50703 * 109.46605 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00236 * 269.72881 * 21 20 19 23 23 C 1.38244 * 119.99657 * 179.76878 * 22 21 20 24 24 C 1.38230 * 120.00202 * 0.51099 * 23 22 21 25 25 C 1.38240 * 119.99998 * 359.74194 * 24 23 22 26 26 C 1.38233 * 119.99953 * 359.97438 * 25 24 23 27 27 N 1.28654 * 110.57992 * 359.83044 * 18 17 16 28 28 H 1.09004 * 109.46824 * 220.32738 * 3 2 1 29 29 H 1.09007 * 109.47215 * 100.33582 * 3 2 1 30 30 H 0.97006 * 120.00331 * 180.02562 * 8 7 5 31 31 H 1.07997 * 125.59231 * 0.04342 * 16 15 13 32 32 H 1.08995 * 109.46873 * 29.97767 * 19 18 17 33 33 H 1.09000 * 109.47201 * 149.97295 * 19 18 17 34 34 H 1.08991 * 109.47209 * 299.99879 * 20 19 18 35 35 H 1.08997 * 109.46762 * 60.00817 * 20 19 18 36 36 H 1.07995 * 120.00249 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.99400 * 180.22539 * 23 22 21 38 38 H 1.07998 * 120.00407 * 179.72903 * 24 23 22 39 39 H 1.07995 * 120.00170 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99993 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0971 -1.2997 0.4648 5 6 3.4043 -1.4831 1.7867 6 1 4.0282 -2.3121 2.0862 7 6 2.9083 -0.6055 2.7437 8 7 1.7907 0.0482 2.5193 9 14 3.8307 -0.3552 4.3486 10 1 4.8031 0.7562 4.1927 11 1 2.8659 -0.0213 5.4271 12 1 4.5563 -1.6018 4.7022 13 6 3.2445 -2.3156 -0.4085 14 8 3.7454 -3.3628 -0.0445 15 6 2.7996 -2.1581 -1.8025 16 6 3.0125 -3.0928 -2.7572 17 16 2.3481 -2.5372 -4.2309 18 6 1.8324 -1.0871 -3.4910 19 6 1.1020 0.0250 -4.1988 20 6 2.1157 1.0190 -4.7689 21 6 1.3851 2.1307 -5.4772 22 6 1.0937 2.0183 -6.8238 23 6 0.4193 3.0360 -7.4723 24 6 0.0458 4.1707 -6.7767 25 6 0.3419 4.2853 -5.4312 26 6 1.0110 3.2652 -4.7814 27 7 2.1537 -1.0759 -2.2453 28 1 2.9710 0.7843 0.6651 29 1 2.9713 0.1852 -1.0110 30 1 1.4447 0.6609 3.1870 31 1 3.5182 -4.0359 -2.6118 32 1 0.5052 -0.3912 -5.0103 33 1 0.4483 0.5373 -3.4928 34 1 2.7124 1.4352 -3.9574 35 1 2.7692 0.5067 -5.4749 36 1 1.3899 1.1340 -7.3684 37 1 0.1885 2.9466 -8.5235 38 1 -0.4771 4.9677 -7.2843 39 1 0.0504 5.1720 -4.8878 40 1 1.2427 3.3549 -3.7303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071884648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = 76.148573 kcal Electronic energy + Delta-G solvation = -26060.996810 eV Core-core repulsion = 22354.306292 eV Total energy + Delta-G solvation = -3706.690518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.08300 -39.41826 -37.90057 -35.68099 -34.72666 -34.13638 -31.91644 -31.10943 -31.03675 -28.64320 -27.43989 -26.03532 -25.05238 -23.31779 -22.72722 -21.24665 -20.42024 -19.22816 -18.03599 -17.85609 -16.96083 -16.26703 -15.63690 -15.52737 -15.45365 -15.15769 -14.60079 -14.44166 -14.11527 -13.91574 -13.53633 -13.45394 -13.25553 -12.93179 -12.85214 -12.74262 -12.47026 -12.07503 -11.91272 -11.61843 -11.44360 -11.38664 -11.16232 -11.15633 -11.13135 -10.94030 -10.46763 -10.41190 -10.31638 -9.41595 -9.32129 -9.17356 -9.07327 -8.89480 -8.77634 -8.47621 -8.05901 -6.59553 -4.00534 0.86119 1.19594 1.24905 1.54048 1.93628 2.51756 3.13190 3.19905 3.24631 3.62091 3.82157 4.09321 4.10797 4.22207 4.38222 4.64277 4.67985 4.84126 4.87703 4.94804 4.98102 5.06763 5.14750 5.25559 5.36542 5.42440 5.54575 5.58751 5.66153 5.73964 5.82254 5.86075 5.94317 6.02823 6.19516 6.30501 6.36369 6.47559 6.49861 6.58453 6.85283 7.40048 7.75938 7.92513 8.25491 8.92944 9.06463 9.13885 9.71344 10.44561 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.003351 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.680737 B = 8353.653295 C =10087.329081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.272 3.728 3 C 0.225 3.775 4 N -0.413 5.413 5 C -0.318 4.318 6 H 0.113 0.887 7 C 0.037 3.963 8 N -0.851 5.851 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.575 6.575 15 C 0.042 3.958 16 C -0.242 4.242 17 S 0.162 5.838 18 C 0.026 3.974 19 C -0.034 4.034 20 C -0.075 4.075 21 C -0.079 4.079 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.112 4.112 27 N -0.437 5.437 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.276 0.724 31 H 0.183 0.817 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 7.062 -19.283 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.046 4.046 3 C 0.097 3.903 4 N -0.129 5.129 5 C -0.445 4.445 6 H 0.131 0.869 7 C -0.170 4.170 8 N -0.487 5.487 9 Si 0.753 3.247 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.459 6.459 15 C -0.091 4.091 16 C -0.384 4.384 17 S 0.418 5.582 18 C -0.254 4.254 19 C -0.075 4.075 20 C -0.114 4.114 21 C -0.079 4.079 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.130 4.130 27 N -0.153 5.153 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.200 0.800 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.226 6.735 -19.603 20.763 hybrid contribution 0.832 0.082 1.902 2.078 sum -0.394 6.817 -17.700 18.972 Atomic orbital electron populations 1.80805 1.13624 1.08573 1.13664 1.28713 0.94833 0.92377 0.88641 1.18912 0.82521 0.88171 1.00668 1.43532 1.53754 1.07743 1.07904 1.19802 1.29663 1.14765 0.80298 0.86921 1.25385 0.94551 0.97095 0.99994 1.69966 1.15190 1.26584 1.36950 0.85913 0.79299 0.79283 0.80254 1.19887 1.20987 1.19070 1.16850 0.86381 0.84315 0.82977 1.90651 1.49453 1.27648 1.78160 1.20941 1.00771 0.89908 0.97504 1.26336 1.09300 1.06772 0.96003 1.82469 1.50262 1.13171 1.12325 1.27086 1.04457 1.00175 0.93655 1.20183 0.96571 0.91691 0.99026 1.20616 0.96867 0.93864 1.00055 1.19851 0.98676 0.95447 0.93909 1.21070 0.99247 0.99023 0.94181 1.21124 0.98893 0.94128 0.99810 1.21146 1.00552 0.98063 0.94719 1.21180 0.98716 0.98966 0.94796 1.21182 0.98228 0.93358 1.00198 1.67345 1.12266 1.24244 1.11419 0.87591 0.87589 0.91328 0.79992 0.89732 0.88542 0.89820 0.90542 0.86043 0.86255 0.86358 0.86096 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.21 18.54 42.16 0.78 -11.42 16 2 C 0.27 6.43 11.69 -20.76 -0.24 6.19 16 3 C 0.22 4.88 4.75 -6.83 -0.03 4.84 16 4 N -0.41 -10.23 2.59 -119.24 -0.31 -10.54 16 5 C -0.32 -8.37 9.28 -14.99 -0.14 -8.51 16 6 H 0.11 3.10 7.40 -52.49 -0.39 2.71 16 7 C 0.04 0.92 4.72 -17.46 -0.08 0.83 16 8 N -0.85 -21.90 9.74 55.50 0.54 -21.36 16 9 Si 0.93 19.46 29.63 -169.99 -5.04 14.42 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.51 12.46 7.55 -12.63 -0.10 12.37 16 14 O -0.58 -15.62 16.37 5.23 0.09 -15.53 16 15 C 0.04 0.85 6.41 -84.53 -0.54 0.31 16 16 C -0.24 -4.05 10.62 29.68 0.32 -3.74 16 17 S 0.16 2.01 22.92 -107.50 -2.46 -0.45 16 18 C 0.03 0.37 6.59 -13.61 -0.09 0.28 16 19 C -0.03 -0.38 5.77 -27.88 -0.16 -0.55 16 20 C -0.08 -0.73 5.33 -27.88 -0.15 -0.88 16 21 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 22 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 26 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 27 N -0.44 -7.88 5.69 -8.51 -0.05 -7.93 16 28 H 0.11 2.28 6.79 -51.93 -0.35 1.93 16 29 H 0.11 2.01 5.71 -51.93 -0.30 1.72 16 30 H 0.28 6.80 8.31 -40.82 -0.34 6.47 16 31 H 0.18 2.91 8.04 -52.49 -0.42 2.49 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -32.13 363.17 -9.09 -41.21 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.39 Total: 3.64 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -3.72 Total: 2.50 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.97 Total: -51.26 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.53 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.04 Total: 14.42 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.46 Total: -0.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.13 -9.09 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071884648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.361 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds