Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47589 * 340.33267 * 3 2 1 5 5 C 1.36946 * 120.00139 * 265.95728 * 4 3 2 6 6 H 1.07993 * 120.00599 * 198.25296 * 5 4 3 7 7 C 1.38987 * 120.00017 * 18.53422 * 5 4 3 8 8 N 1.31408 * 120.00031 * 26.31992 * 7 5 4 9 9 Si 1.86796 * 119.99885 * 206.32957 * 7 5 4 10 10 H 1.48498 * 109.47449 * 89.99366 * 9 7 5 11 11 H 1.48504 * 109.46982 * 209.99610 * 9 7 5 12 12 H 1.48502 * 109.47172 * 329.99327 * 9 7 5 13 13 C 1.34778 * 119.99909 * 85.94968 * 4 3 2 14 14 O 1.21657 * 119.99971 * 174.41325 * 13 4 3 15 15 C 1.47173 * 119.99934 * 354.41954 * 13 4 3 16 16 C 1.35299 * 123.15151 * 174.54653 * 15 13 4 17 17 S 1.70940 * 108.82223 * 179.97438 * 16 15 13 18 18 C 1.70768 * 91.13614 * 0.28972 * 17 16 15 19 19 C 1.50702 * 124.71321 * 179.84977 * 18 17 16 20 20 C 1.52999 * 109.46995 * 269.97309 * 19 18 17 21 21 C 1.50703 * 109.46605 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00236 * 269.72881 * 21 20 19 23 23 C 1.38244 * 119.99657 * 179.76878 * 22 21 20 24 24 C 1.38230 * 120.00202 * 0.51099 * 23 22 21 25 25 C 1.38240 * 119.99998 * 359.74194 * 24 23 22 26 26 C 1.38233 * 119.99953 * 359.97438 * 25 24 23 27 27 N 1.28654 * 110.57992 * 359.83044 * 18 17 16 28 28 H 1.09004 * 109.46824 * 220.32738 * 3 2 1 29 29 H 1.09007 * 109.47215 * 100.33582 * 3 2 1 30 30 H 0.97006 * 120.00331 * 180.02562 * 8 7 5 31 31 H 1.07997 * 125.59231 * 0.04342 * 16 15 13 32 32 H 1.08995 * 109.46873 * 29.97767 * 19 18 17 33 33 H 1.09000 * 109.47201 * 149.97295 * 19 18 17 34 34 H 1.08991 * 109.47209 * 299.99879 * 20 19 18 35 35 H 1.08997 * 109.46762 * 60.00817 * 20 19 18 36 36 H 1.07995 * 120.00249 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.99400 * 180.22539 * 23 22 21 38 38 H 1.07998 * 120.00407 * 179.72903 * 24 23 22 39 39 H 1.07995 * 120.00170 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99993 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0971 -1.2997 0.4648 5 6 3.4043 -1.4831 1.7867 6 1 4.0282 -2.3121 2.0862 7 6 2.9083 -0.6055 2.7437 8 7 1.7907 0.0482 2.5193 9 14 3.8307 -0.3552 4.3486 10 1 4.8031 0.7562 4.1927 11 1 2.8659 -0.0213 5.4271 12 1 4.5563 -1.6018 4.7022 13 6 3.2445 -2.3156 -0.4085 14 8 3.7454 -3.3628 -0.0445 15 6 2.7996 -2.1581 -1.8025 16 6 3.0125 -3.0928 -2.7572 17 16 2.3481 -2.5372 -4.2309 18 6 1.8324 -1.0871 -3.4910 19 6 1.1020 0.0250 -4.1988 20 6 2.1157 1.0190 -4.7689 21 6 1.3851 2.1307 -5.4772 22 6 1.0937 2.0183 -6.8238 23 6 0.4193 3.0360 -7.4723 24 6 0.0458 4.1707 -6.7767 25 6 0.3419 4.2853 -5.4312 26 6 1.0110 3.2652 -4.7814 27 7 2.1537 -1.0759 -2.2453 28 1 2.9710 0.7843 0.6651 29 1 2.9713 0.1852 -1.0110 30 1 1.4447 0.6609 3.1870 31 1 3.5182 -4.0359 -2.6118 32 1 0.5052 -0.3912 -5.0103 33 1 0.4483 0.5373 -3.4928 34 1 2.7124 1.4352 -3.9574 35 1 2.7692 0.5067 -5.4749 36 1 1.3899 1.1340 -7.3684 37 1 0.1885 2.9466 -8.5235 38 1 -0.4771 4.9677 -7.2843 39 1 0.0504 5.1720 -4.8878 40 1 1.2427 3.3549 -3.7303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071884648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = 59.140790 kcal Electronic energy + Delta-G solvation = -26061.734323 eV Core-core repulsion = 22354.306292 eV Total energy + Delta-G solvation = -3707.428031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55516 -40.15269 -39.51436 -37.58045 -36.08001 -35.59625 -33.82680 -32.12864 -31.68498 -29.72489 -29.25635 -27.67788 -26.22930 -24.71522 -23.38375 -22.18699 -21.52281 -20.68182 -19.76471 -19.52136 -18.08578 -17.62779 -17.12025 -16.97477 -16.38920 -16.20338 -15.93728 -15.85290 -15.59054 -14.93552 -14.88381 -14.77323 -14.58628 -14.20519 -13.96763 -13.85192 -13.78187 -13.38919 -13.34219 -13.13279 -12.89802 -12.84523 -12.78744 -12.33645 -12.21891 -12.13618 -12.05522 -11.81912 -11.64875 -11.18937 -10.79889 -10.56504 -10.44424 -9.99768 -9.78778 -9.73887 -9.49356 -8.50446 -6.01613 -0.39423 0.36469 0.52103 0.58246 0.68575 1.04185 1.45855 1.48362 1.58530 2.01906 2.31347 2.38471 2.52434 2.87940 2.98183 2.99132 3.28445 3.76049 3.78926 3.99041 4.10820 4.22646 4.24761 4.27986 4.33711 4.38357 4.45228 4.57833 4.68544 4.71880 4.74591 4.77444 5.01398 5.04762 5.13449 5.26493 5.29172 5.41373 5.65650 5.70960 5.80545 5.94608 6.20890 6.28195 6.61359 7.00290 7.18009 7.24903 7.82205 8.52877 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.003351 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.680737 B = 8353.653295 C =10087.329081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.286 3.714 3 C 0.233 3.767 4 N -0.428 5.428 5 C -0.354 4.354 6 H 0.089 0.911 7 C 0.010 3.990 8 N -0.876 5.876 9 Si 0.993 3.007 10 H -0.256 1.256 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.501 3.499 14 O -0.615 6.615 15 C 0.007 3.993 16 C -0.251 4.251 17 S 0.293 5.707 18 C 0.014 3.986 19 C -0.030 4.030 20 C -0.068 4.068 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.133 4.133 27 N -0.468 5.468 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.278 0.722 31 H 0.185 0.815 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 7.479 -22.375 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.031 4.031 3 C 0.107 3.893 4 N -0.144 5.144 5 C -0.481 4.481 6 H 0.106 0.894 7 C -0.195 4.195 8 N -0.512 5.512 9 Si 0.816 3.184 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.290 3.710 14 O -0.502 6.502 15 C -0.127 4.127 16 C -0.394 4.394 17 S 0.550 5.450 18 C -0.265 4.265 19 C -0.071 4.071 20 C -0.106 4.106 21 C -0.089 4.089 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.152 4.152 27 N -0.185 5.185 28 H 0.123 0.877 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.203 0.797 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.296 7.176 -22.732 23.873 hybrid contribution 0.801 -0.130 2.609 2.732 sum -0.495 7.046 -20.123 21.327 Atomic orbital electron populations 1.80779 1.14493 1.09621 1.14931 1.29033 0.95149 0.91373 0.87559 1.19042 0.81380 0.86901 1.02014 1.43669 1.54264 1.08849 1.07653 1.19726 1.31061 1.15509 0.81780 0.89354 1.26113 0.94676 0.96043 1.02690 1.70032 1.15998 1.27039 1.38084 0.84943 0.78113 0.79206 0.76134 1.18056 1.20809 1.19693 1.17558 0.84950 0.83591 0.84906 1.90590 1.50911 1.29053 1.79666 1.20379 1.03977 0.92358 0.96004 1.26690 1.08214 1.06172 0.98286 1.81993 1.46332 1.09362 1.07298 1.27605 1.03667 1.02085 0.93123 1.20289 0.96630 0.91181 0.98967 1.20547 0.96470 0.93600 1.00022 1.19889 0.99206 0.95243 0.94573 1.21356 0.98801 0.99958 0.93715 1.21477 0.98188 0.93711 1.01006 1.21456 1.00319 0.98890 0.94439 1.21390 0.98896 0.99203 0.95569 1.21298 0.99308 0.94374 1.00170 1.67219 1.13447 1.24241 1.13544 0.87735 0.84877 0.91157 0.79750 0.87044 0.90681 0.91083 0.88537 0.83815 0.83916 0.84477 0.85284 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.49 18.54 20.01 0.37 -26.11 16 2 C 0.29 13.84 11.69 89.44 1.05 14.88 16 3 C 0.23 10.41 4.75 84.57 0.40 10.81 16 4 N -0.43 -22.07 2.59 -649.40 -1.68 -23.75 16 5 C -0.35 -19.44 9.28 84.07 0.78 -18.66 16 6 H 0.09 5.17 7.40 -2.91 -0.02 5.15 16 7 C 0.01 0.49 4.72 84.94 0.40 0.89 16 8 N -0.88 -45.98 9.74 21.67 0.21 -45.77 16 9 Si 0.99 40.62 29.63 68.60 2.03 42.66 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.50 25.54 7.55 86.59 0.65 26.20 16 14 O -0.62 -35.00 16.37 -4.21 -0.07 -35.07 16 15 C 0.01 0.28 6.41 40.55 0.26 0.54 16 16 C -0.25 -8.03 10.62 67.14 0.71 -7.31 16 17 S 0.29 6.14 22.92 -56.49 -1.29 4.85 16 18 C 0.01 0.36 6.59 88.57 0.58 0.94 16 19 C -0.03 -0.61 5.77 29.85 0.17 -0.44 16 20 C -0.07 -1.17 5.33 29.85 0.16 -1.01 16 21 C -0.09 -1.59 5.13 -19.86 -0.10 -1.69 16 22 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 23 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 25 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 26 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 27 N -0.47 -16.65 5.69 -180.84 -1.03 -17.67 16 28 H 0.10 4.64 6.79 -2.38 -0.02 4.62 16 29 H 0.13 5.16 5.71 -2.38 -0.01 5.15 16 30 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 31 H 0.19 5.71 8.04 -2.91 -0.02 5.69 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 35 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16 36 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -73.03 363.17 5.80 -67.23 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.08 Total: 17.94 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.17 Total: 15.70 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -2.13 Total: -113.31 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.07 Total: -35.07 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.29 Total: 4.85 kcal Total: -73.03 5.80 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071884648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.371 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds