Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47054 * 270.00280 * 3 2 1 5 5 H 1.48498 * 109.47044 * 29.99796 * 3 2 1 6 6 H 1.48499 * 109.47407 * 150.00298 * 3 2 1 7 7 C 1.37880 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00208 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99611 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46806 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99728 * 275.00046 * 10 9 7 12 12 C 1.50699 * 109.47032 * 274.99866 * 11 10 9 13 13 C 1.34516 * 125.78976 * 89.71919 * 12 11 10 14 14 C 1.41385 * 106.83927 * 179.89066 * 13 12 11 15 15 C 1.34509 * 106.84039 * 0.36989 * 14 13 12 16 16 O 1.34298 * 108.42090 * 359.77515 * 15 14 13 17 17 S 1.65595 * 119.99897 * 94.99931 * 10 9 7 18 18 O 1.42093 * 104.27935 * 333.92691 * 17 10 9 19 19 O 1.42105 * 104.27413 * 206.06741 * 17 10 9 20 20 C 1.81401 * 104.44822 * 90.00160 * 17 10 9 21 21 C 1.52997 * 109.47149 * 179.97438 * 20 17 10 22 22 C 1.53001 * 109.47242 * 295.00223 * 21 20 17 23 23 C 1.52997 * 109.47242 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47380 * 59.99720 * 23 22 21 25 25 C 1.53002 * 109.46654 * 300.00174 * 24 23 22 26 26 C 1.52994 * 109.47404 * 174.99676 * 21 20 17 27 27 H 0.96996 * 120.00623 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47170 * 59.99856 * 9 7 2 29 29 H 1.08993 * 109.47056 * 299.99378 * 9 7 2 30 30 H 1.09001 * 109.47337 * 35.00150 * 11 10 9 31 31 H 1.08997 * 109.47133 * 154.99925 * 11 10 9 32 32 H 1.08000 * 126.58068 * 0.02562 * 13 12 11 33 33 H 1.08006 * 126.57839 * 180.16640 * 14 13 12 34 34 H 1.08003 * 125.78249 * 179.75246 * 15 14 13 35 35 H 1.09002 * 109.47085 * 299.99812 * 20 17 10 36 36 H 1.09001 * 109.47417 * 59.99938 * 20 17 10 37 37 H 1.09008 * 109.47017 * 54.99753 * 21 20 17 38 38 H 1.09008 * 109.46731 * 299.99706 * 22 21 20 39 39 H 1.08998 * 109.47430 * 59.99652 * 22 21 20 40 40 H 1.08998 * 109.46934 * 299.99660 * 23 22 21 41 41 H 1.09000 * 109.47325 * 179.97438 * 23 22 21 42 42 H 1.08992 * 109.47003 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.46692 * 59.99766 * 24 23 22 44 44 H 1.08995 * 109.46734 * 299.99283 * 25 24 23 45 45 H 1.09002 * 109.46264 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.47476 * 300.00087 * 26 21 20 47 47 H 1.09008 * 109.46970 * 60.00049 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.1403 -3.3023 1.2631 12 6 5.4771 -2.9823 1.8809 13 6 5.7284 -1.9717 2.7323 14 6 7.1019 -2.0442 3.0600 15 6 7.6094 -3.0897 2.3827 16 8 6.6207 -3.6541 1.6702 17 16 4.3932 -3.3145 -1.4296 18 8 3.6015 -2.6442 -2.4007 19 8 4.2146 -4.6998 -1.1681 20 6 6.1506 -2.9332 -1.6678 21 6 6.6386 -3.5696 -2.9707 22 6 6.5674 -5.0933 -2.8520 23 6 7.0548 -5.7298 -4.1552 24 6 8.5008 -5.3058 -4.4203 25 6 8.5718 -3.7820 -4.5391 26 6 8.0846 -3.1456 -3.2352 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8744 -0.6800 -0.8911 30 1 3.3440 -3.0033 1.9447 31 1 4.0742 -4.3740 1.0751 32 1 5.0171 -1.2457 3.0975 33 1 7.6409 -1.3844 3.7238 34 1 8.6377 -3.4191 2.4075 35 1 6.2843 -1.8526 -1.7185 36 1 6.7254 -3.3316 -0.8317 37 1 6.0065 -3.2396 -3.7953 38 1 7.1995 -5.4234 -2.0274 39 1 5.5372 -5.3954 -2.6636 40 1 6.4225 -5.3997 -4.9794 41 1 7.0045 -6.8153 -4.0704 42 1 8.8478 -5.7588 -5.3489 43 1 9.1331 -5.6358 -3.5961 44 1 7.9396 -3.4521 -5.3633 45 1 9.6019 -3.4801 -4.7284 46 1 8.1353 -2.0600 -3.3199 47 1 8.7166 -3.4756 -2.4107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071909447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -72.760327 kcal Electronic energy + Delta-G solvation = -29428.343148 eV Core-core repulsion = 25511.426880 eV Total energy + Delta-G solvation = -3916.916269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41143 -38.83376 -36.62420 -36.14501 -35.34834 -32.92680 -32.85714 -32.51340 -30.87837 -30.32298 -27.78411 -26.89550 -25.05767 -22.78341 -22.16425 -21.62817 -21.50539 -20.38482 -19.90382 -18.34297 -17.41159 -17.12796 -16.78207 -16.18182 -15.88453 -15.53910 -15.45847 -14.75376 -14.42785 -14.34752 -14.18361 -14.00149 -13.85645 -12.98373 -12.92528 -12.75589 -12.68395 -12.53704 -12.52724 -12.33803 -12.00985 -11.99220 -11.78370 -11.50261 -11.48738 -11.27656 -11.24362 -11.17056 -10.72058 -10.68188 -10.61356 -10.52890 -10.37678 -10.22367 -9.85168 -9.78889 -9.55638 -8.60688 -8.42143 -8.26946 -6.09109 -4.08431 0.71193 1.81145 2.71372 3.08982 3.24797 3.28878 3.31172 3.35978 4.23871 4.36882 4.38347 4.52289 4.58270 4.66880 4.85287 4.99000 5.02543 5.08394 5.13521 5.16447 5.21695 5.27596 5.30705 5.38481 5.42149 5.43449 5.54527 5.67582 5.76472 5.89538 5.90401 5.93820 5.96960 6.01085 6.03244 6.04212 6.12234 6.15179 6.23038 6.27862 6.32911 6.62613 6.66326 6.95369 7.20512 7.29356 7.54773 8.47188 8.96558 9.49552 11.04340 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010418 B = 0.004704 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.904545 B = 5950.552522 C = 7312.720620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.867 3.133 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.224 3.776 10 N -0.974 5.974 11 C 0.198 3.802 12 C -0.030 4.030 13 C -0.193 4.193 14 C -0.213 4.213 15 C -0.051 4.051 16 O -0.179 6.179 17 S 2.602 3.398 18 O -0.933 6.933 19 O -0.963 6.963 20 C -0.637 4.637 21 C -0.073 4.073 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.105 4.105 27 H 0.265 0.735 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.198 0.802 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.894 -7.344 -1.046 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.810 5.810 11 C 0.072 3.928 12 C -0.082 4.082 13 C -0.213 4.213 14 C -0.233 4.233 15 C -0.119 4.119 16 O -0.075 6.075 17 S 2.695 3.305 18 O -0.923 6.923 19 O -0.954 6.954 20 C -0.764 4.764 21 C -0.093 4.093 22 C -0.183 4.183 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.141 0.859 31 H 0.121 0.879 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.214 0.786 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.139 -7.944 -1.782 20.798 hybrid contribution 1.168 1.721 0.561 2.154 sum 20.307 -6.223 -1.221 21.274 Atomic orbital electron populations 1.69883 1.06144 1.26968 1.50166 1.24835 0.94721 0.98737 0.94469 0.86998 0.80424 0.84252 0.78967 1.19790 1.20900 1.18888 1.21327 0.88929 0.95126 1.51427 0.90142 1.19517 0.96311 0.76598 0.97452 1.57399 1.78188 1.26091 1.19308 1.19710 0.88167 0.98043 0.86910 1.23533 0.88113 0.95027 1.01526 1.21736 0.96628 1.00750 1.02177 1.21844 0.95390 1.01049 1.04990 1.23952 0.93311 0.97056 0.97603 1.84026 1.16951 1.50016 1.56487 1.05316 0.76866 0.74246 0.74119 1.93646 1.64008 1.75051 1.59575 1.93509 1.85390 1.32044 1.84411 1.30858 1.28383 1.10841 1.06327 1.20862 0.98597 0.95515 0.94301 1.22052 1.03733 0.93774 0.98706 1.21519 0.96276 1.00337 0.97503 1.21562 0.96996 0.95803 1.01429 1.21581 1.00999 0.95574 0.97806 1.21529 0.94710 1.00298 0.97769 0.92499 0.94582 0.95236 0.85906 0.87883 0.83136 0.83772 0.78556 0.85371 0.85233 0.89947 0.90890 0.89846 0.91702 0.91535 0.92089 0.91990 0.91747 0.91957 0.91690 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -14.69 9.94 -34.44 -0.34 -15.03 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.22 5.11 4.08 -5.19 -0.02 5.09 16 10 N -0.97 -19.15 2.68 -116.95 -0.31 -19.46 16 11 C 0.20 3.34 6.18 -5.19 -0.03 3.31 16 12 C -0.03 -0.46 6.90 -35.62 -0.25 -0.70 16 13 C -0.19 -2.80 10.81 -39.70 -0.43 -3.23 16 14 C -0.21 -2.60 10.91 -39.70 -0.43 -3.04 16 15 C -0.05 -0.58 12.09 29.41 0.36 -0.23 16 16 O -0.18 -2.51 9.84 5.73 0.06 -2.45 16 17 S 2.60 49.25 5.02 -107.50 -0.54 48.71 16 18 O -0.93 -21.62 16.99 -57.54 -0.98 -22.60 16 19 O -0.96 -18.85 14.28 -57.54 -0.82 -19.67 16 20 C -0.64 -9.00 5.62 37.16 0.21 -8.79 16 21 C -0.07 -0.93 2.19 -90.62 -0.20 -1.13 16 22 C -0.15 -1.82 4.89 -26.73 -0.13 -1.95 16 23 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 24 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 25 C -0.12 -1.10 5.92 -26.70 -0.16 -1.26 16 26 C -0.10 -1.09 5.21 -26.71 -0.14 -1.23 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.04 0.78 7.17 -51.93 -0.37 0.41 16 29 H 0.03 0.68 7.04 -51.93 -0.37 0.31 16 30 H 0.12 2.03 8.11 -51.93 -0.42 1.61 16 31 H 0.10 1.64 6.82 -51.93 -0.35 1.29 16 32 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.20 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.13 1.68 7.31 -51.92 -0.38 1.30 16 37 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.08 1.21 5.61 -51.93 -0.29 0.91 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -33.83 385.19 -10.36 -44.19 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.69 Total: 4.51 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -1.98 Total: -28.75 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.46 Total: -45.77 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.74 Total: -44.72 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -0.54 Total: 48.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.83 -10.36 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.568 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds