Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47054 * 270.00280 * 3 2 1 5 5 H 1.48498 * 109.47044 * 29.99796 * 3 2 1 6 6 H 1.48499 * 109.47407 * 150.00298 * 3 2 1 7 7 C 1.37880 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00208 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99611 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46806 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99728 * 275.00046 * 10 9 7 12 12 C 1.50699 * 109.47032 * 274.99866 * 11 10 9 13 13 C 1.34516 * 125.78976 * 89.71919 * 12 11 10 14 14 C 1.41385 * 106.83927 * 179.89066 * 13 12 11 15 15 C 1.34509 * 106.84039 * 0.36989 * 14 13 12 16 16 O 1.34298 * 108.42090 * 359.77515 * 15 14 13 17 17 S 1.65595 * 119.99897 * 94.99931 * 10 9 7 18 18 O 1.42093 * 104.27935 * 333.92691 * 17 10 9 19 19 O 1.42105 * 104.27413 * 206.06741 * 17 10 9 20 20 C 1.81401 * 104.44822 * 90.00160 * 17 10 9 21 21 C 1.52997 * 109.47149 * 179.97438 * 20 17 10 22 22 C 1.53001 * 109.47242 * 295.00223 * 21 20 17 23 23 C 1.52997 * 109.47242 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47380 * 59.99720 * 23 22 21 25 25 C 1.53002 * 109.46654 * 300.00174 * 24 23 22 26 26 C 1.52994 * 109.47404 * 174.99676 * 21 20 17 27 27 H 0.96996 * 120.00623 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47170 * 59.99856 * 9 7 2 29 29 H 1.08993 * 109.47056 * 299.99378 * 9 7 2 30 30 H 1.09001 * 109.47337 * 35.00150 * 11 10 9 31 31 H 1.08997 * 109.47133 * 154.99925 * 11 10 9 32 32 H 1.08000 * 126.58068 * 0.02562 * 13 12 11 33 33 H 1.08006 * 126.57839 * 180.16640 * 14 13 12 34 34 H 1.08003 * 125.78249 * 179.75246 * 15 14 13 35 35 H 1.09002 * 109.47085 * 299.99812 * 20 17 10 36 36 H 1.09001 * 109.47417 * 59.99938 * 20 17 10 37 37 H 1.09008 * 109.47017 * 54.99753 * 21 20 17 38 38 H 1.09008 * 109.46731 * 299.99706 * 22 21 20 39 39 H 1.08998 * 109.47430 * 59.99652 * 22 21 20 40 40 H 1.08998 * 109.46934 * 299.99660 * 23 22 21 41 41 H 1.09000 * 109.47325 * 179.97438 * 23 22 21 42 42 H 1.08992 * 109.47003 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.46692 * 59.99766 * 24 23 22 44 44 H 1.08995 * 109.46734 * 299.99283 * 25 24 23 45 45 H 1.09002 * 109.46264 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.47476 * 300.00087 * 26 21 20 47 47 H 1.09008 * 109.46970 * 60.00049 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.1403 -3.3023 1.2631 12 6 5.4771 -2.9823 1.8809 13 6 5.7284 -1.9717 2.7323 14 6 7.1019 -2.0442 3.0600 15 6 7.6094 -3.0897 2.3827 16 8 6.6207 -3.6541 1.6702 17 16 4.3932 -3.3145 -1.4296 18 8 3.6015 -2.6442 -2.4007 19 8 4.2146 -4.6998 -1.1681 20 6 6.1506 -2.9332 -1.6678 21 6 6.6386 -3.5696 -2.9707 22 6 6.5674 -5.0933 -2.8520 23 6 7.0548 -5.7298 -4.1552 24 6 8.5008 -5.3058 -4.4203 25 6 8.5718 -3.7820 -4.5391 26 6 8.0846 -3.1456 -3.2352 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8744 -0.6800 -0.8911 30 1 3.3440 -3.0033 1.9447 31 1 4.0742 -4.3740 1.0751 32 1 5.0171 -1.2457 3.0975 33 1 7.6409 -1.3844 3.7238 34 1 8.6377 -3.4191 2.4075 35 1 6.2843 -1.8526 -1.7185 36 1 6.7254 -3.3316 -0.8317 37 1 6.0065 -3.2396 -3.7953 38 1 7.1995 -5.4234 -2.0274 39 1 5.5372 -5.3954 -2.6636 40 1 6.4225 -5.3997 -4.9794 41 1 7.0045 -6.8153 -4.0704 42 1 8.8478 -5.7588 -5.3489 43 1 9.1331 -5.6358 -3.5961 44 1 7.9396 -3.4521 -5.3633 45 1 9.6019 -3.4801 -4.7284 46 1 8.1353 -2.0600 -3.3199 47 1 8.7166 -3.4756 -2.4107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071909447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = -94.664031 kcal Electronic energy + Delta-G solvation = -29429.292964 eV Core-core repulsion = 25511.426880 eV Total energy + Delta-G solvation = -3917.866085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.42348 -39.70637 -38.20711 -37.70848 -36.94337 -34.65191 -33.87532 -33.80223 -31.72624 -31.67242 -29.44950 -27.92548 -26.46764 -23.95696 -23.58474 -22.60450 -22.52775 -21.44053 -20.74960 -19.83581 -19.13411 -18.68874 -18.12054 -17.53435 -17.34926 -16.73046 -16.48590 -16.18224 -15.69840 -15.49841 -15.31007 -15.09339 -14.95834 -14.55244 -14.35135 -13.94455 -13.80209 -13.68846 -13.59015 -13.46868 -13.35272 -13.27695 -13.20371 -13.02565 -12.89519 -12.79173 -12.36955 -12.23048 -12.17286 -12.04113 -12.03387 -11.83180 -11.70364 -11.40291 -11.07370 -10.86253 -10.78989 -10.77221 -9.93993 -9.40419 -8.27677 -6.33128 -0.74554 0.76974 1.35981 1.39873 1.47901 1.63569 1.89980 2.12827 2.35436 2.90158 3.05049 3.14272 3.38845 3.59865 3.73044 3.75337 3.93151 4.05257 4.18687 4.21265 4.27437 4.32908 4.35582 4.40731 4.53290 4.54354 4.60129 4.66312 4.68992 4.72962 4.83110 4.95344 4.98423 5.09934 5.13141 5.17235 5.21507 5.22960 5.25497 5.26214 5.36306 5.38027 5.47595 5.54624 5.59239 5.67654 6.26315 6.31033 6.69847 7.29146 8.89960 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010418 B = 0.004704 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.904545 B = 5950.552522 C = 7312.720620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.227 1.227 7 C -0.538 4.538 8 H 0.029 0.971 9 C 0.234 3.766 10 N -0.983 5.983 11 C 0.196 3.804 12 C -0.051 4.051 13 C -0.197 4.197 14 C -0.224 4.224 15 C -0.033 4.033 16 O -0.188 6.188 17 S 2.587 3.413 18 O -0.990 6.990 19 O -0.983 6.983 20 C -0.599 4.599 21 C -0.080 4.080 22 C -0.150 4.150 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.101 4.101 27 H 0.267 0.733 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.243 0.757 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.228 -6.339 -0.605 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.150 1.150 7 C -0.577 4.577 8 H 0.047 0.953 9 C 0.109 3.891 10 N -0.818 5.818 11 C 0.071 3.929 12 C -0.103 4.103 13 C -0.218 4.218 14 C -0.243 4.243 15 C -0.100 4.100 16 O -0.085 6.085 17 S 2.686 3.314 18 O -0.980 6.980 19 O -0.973 6.973 20 C -0.732 4.732 21 C -0.100 4.100 22 C -0.188 4.188 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.140 4.140 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.259 0.741 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.427 -6.982 -1.310 25.439 hybrid contribution -0.458 1.239 0.433 1.390 sum 23.969 -5.743 -0.878 24.663 Atomic orbital electron populations 1.70064 1.08423 1.28249 1.52090 1.25882 0.95643 1.03394 0.93921 0.85873 0.80422 0.78314 0.79465 1.19478 1.20373 1.14987 1.21639 0.91907 0.93332 1.50854 0.95258 1.19249 0.92804 0.78724 0.98286 1.57271 1.79173 1.24896 1.20480 1.19623 0.89791 0.97669 0.85848 1.22938 0.87920 0.96345 1.03064 1.21922 0.98102 1.00119 1.01647 1.22140 0.94212 1.02088 1.05861 1.24873 0.94144 0.95730 0.95297 1.84011 1.17005 1.50271 1.57188 1.05481 0.79112 0.73582 0.73187 1.93573 1.67581 1.75764 1.61106 1.93476 1.86789 1.32775 1.84293 1.30533 1.22084 1.12407 1.08206 1.21035 1.00513 0.95599 0.92901 1.22087 1.02360 0.93898 1.00432 1.21559 0.97582 1.00687 0.96066 1.21560 0.95553 0.95827 1.02523 1.21612 1.02012 0.95523 0.96877 1.21548 0.92413 1.00952 0.99045 0.92377 0.92476 0.94734 0.86935 0.87970 0.83570 0.81271 0.74108 0.83442 0.83086 0.90929 0.89783 0.92737 0.92290 0.90829 0.90691 0.91075 0.92204 0.89945 0.90898 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.55 5.47 84.66 0.46 1.01 16 3 Si 0.94 42.56 27.47 68.60 1.88 44.44 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 7 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 9 C 0.23 10.74 4.08 85.63 0.35 11.09 16 10 N -0.98 -39.66 2.68 -523.91 -1.41 -41.07 16 11 C 0.20 6.83 6.18 85.63 0.53 7.36 16 12 C -0.05 -1.50 6.90 24.83 0.17 -1.33 16 13 C -0.20 -5.33 10.81 22.19 0.24 -5.09 16 14 C -0.22 -4.58 10.91 22.19 0.24 -4.33 16 15 C -0.03 -0.60 12.09 66.97 0.81 0.21 16 16 O -0.19 -4.74 9.84 -2.41 -0.02 -4.76 16 17 S 2.59 101.00 5.02 -56.49 -0.28 100.72 16 18 O -0.99 -48.42 16.99 -127.65 -2.17 -50.59 16 19 O -0.98 -40.44 14.28 -127.65 -1.82 -42.26 16 20 C -0.60 -15.76 5.62 71.98 0.40 -15.36 16 21 C -0.08 -1.90 2.19 -10.80 -0.02 -1.92 16 22 C -0.15 -3.59 4.89 30.59 0.15 -3.44 16 23 C -0.12 -2.33 5.92 30.60 0.18 -2.14 16 24 C -0.12 -1.69 5.92 30.60 0.18 -1.51 16 25 C -0.12 -1.78 5.92 30.61 0.18 -1.60 16 26 C -0.10 -1.72 5.21 30.61 0.16 -1.56 16 27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.06 2.38 7.17 -2.39 -0.02 2.37 16 29 H 0.03 1.56 7.04 -2.39 -0.02 1.54 16 30 H 0.11 4.00 8.11 -2.39 -0.02 3.98 16 31 H 0.10 3.46 6.82 -2.39 -0.02 3.45 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.24 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.15 3.42 7.31 -2.39 -0.02 3.40 16 37 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.05 1.62 5.61 -2.39 -0.01 1.60 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -79.18 385.19 1.66 -77.53 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.89 Total: 25.67 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 4.29 Total: -49.73 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -1.11 Total: -101.02 kcal Atomic # 8 Polarization: -93.60 SS G_CDS: -4.01 Total: -97.61 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.44 kcal Atomic # 16 Polarization: 101.00 SS G_CDS: -0.28 Total: 100.72 kcal Total: -79.18 1.66 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.138 kcal (2) G-P(sol) polarization free energy of solvation -79.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds