Wall clock time and date at job start Tue Mar 31 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00152 * 2 1 4 4 C 1.53005 * 109.46892 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46680 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46847 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99934 * 270.00334 * 6 5 4 8 8 C 1.52998 * 109.46921 * 269.99692 * 7 6 5 9 9 O 1.42906 * 109.47215 * 65.00419 * 8 7 6 10 10 C 1.42897 * 114.00328 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00065 * 89.99940 * 6 5 4 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 6 5 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 6 5 14 14 C 1.40194 * 119.99945 * 180.27819 * 13 11 6 15 15 C 1.40400 * 125.97290 * 359.43673 * 14 13 11 16 16 C 1.35239 * 107.86865 * 179.88873 * 15 14 13 17 17 N 1.34968 * 107.85948 * 0.37291 * 16 15 14 18 18 C 1.46493 * 125.97615 * 179.73033 * 17 16 15 19 19 C 1.50710 * 109.47191 * 125.01636 * 18 17 16 20 20 H 1.07998 * 119.99704 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99911 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00325 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99496 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47534 * 359.97438 * 23 21 19 25 25 H 1.48511 * 109.46849 * 119.99940 * 23 21 19 26 26 H 1.48501 * 109.46869 * 239.99277 * 23 21 19 27 27 N 1.31208 * 125.97117 * 179.74638 * 14 13 11 28 28 H 1.09002 * 109.46867 * 300.00051 * 1 2 3 29 29 H 1.09000 * 109.47410 * 59.99380 * 1 2 3 30 30 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46976 * 60.00257 * 3 2 1 32 32 H 1.08998 * 109.47027 * 300.00357 * 3 2 1 33 33 H 1.09001 * 109.46787 * 60.00532 * 4 3 2 34 34 H 1.09000 * 109.47001 * 299.99840 * 4 3 2 35 35 H 1.08996 * 109.47096 * 60.00227 * 5 4 3 36 36 H 1.08998 * 109.47119 * 300.00197 * 5 4 3 37 37 H 1.08999 * 109.47701 * 29.99507 * 7 6 5 38 38 H 1.09005 * 109.47188 * 150.00374 * 7 6 5 39 39 H 1.08999 * 109.47534 * 184.99953 * 8 7 6 40 40 H 1.09000 * 109.47595 * 305.00401 * 8 7 6 41 41 H 1.08999 * 109.47019 * 59.99362 * 10 9 8 42 42 H 1.08994 * 109.47483 * 179.97438 * 10 9 8 43 43 H 1.09001 * 109.46703 * 299.99878 * 10 9 8 44 44 H 0.97001 * 119.99727 * 359.97438 * 13 11 6 45 45 H 1.08006 * 126.06392 * 0.02562 * 15 14 13 46 46 H 1.08007 * 126.07507 * 180.11544 * 16 15 14 47 47 H 1.08998 * 109.47186 * 245.01344 * 18 17 16 48 48 H 1.08999 * 109.47486 * 5.01412 * 18 17 16 49 49 H 0.97001 * 120.00025 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 -0.0012 7 6 6.3494 2.4076 1.2668 8 6 6.7179 3.8251 1.7094 9 8 5.5260 4.5603 1.9941 10 6 5.7597 5.9048 2.4179 11 6 6.2891 2.4143 -1.1690 12 8 5.6823 2.4636 -2.2215 13 7 7.6326 2.3073 -1.1702 14 6 8.3309 2.2588 -2.3849 15 6 7.7597 2.3005 -3.6667 16 6 8.7633 2.2325 -4.5707 17 7 9.9264 2.1424 -3.8918 18 6 11.2627 2.0422 -4.4837 19 6 12.1375 3.1414 -3.9379 20 1 11.7378 3.8445 -3.2222 21 6 13.4477 3.2500 -4.3532 22 7 13.9343 2.3942 -5.2252 23 14 14.5317 4.6129 -3.6773 24 1 13.7516 5.4368 -2.7192 25 1 15.7002 4.0167 -2.9811 26 1 15.0051 5.4689 -4.7946 27 7 9.6321 2.1607 -2.5225 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8567 0.6438 -0.8909 34 1 3.8574 0.6435 0.8891 35 1 3.8366 3.1226 0.8904 36 1 3.8358 3.1238 -0.8895 37 1 5.7222 1.9414 2.0267 38 1 7.2582 1.8203 1.1353 39 1 7.3375 3.7767 2.6048 40 1 7.2700 4.3227 0.9121 41 1 6.2917 6.4452 1.6350 42 1 4.8060 6.3950 2.6137 43 1 6.3596 5.8998 3.3279 44 1 8.1167 2.2683 -0.3305 45 1 6.7059 2.3760 -3.8911 46 1 8.6534 2.2437 -5.6451 47 1 11.6983 1.0743 -4.2357 48 1 11.1888 2.1406 -5.5667 49 1 14.8562 2.4704 -5.5171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071912177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:20 Heat of formation + Delta-G solvation = -29.111061 kcal Electronic energy + Delta-G solvation = -29651.947589 eV Core-core repulsion = 25424.182637 eV Total energy + Delta-G solvation = -4227.764952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85410 -39.84944 -38.19736 -38.13046 -35.99598 -34.85095 -33.46001 -32.68145 -30.81691 -29.89332 -29.25320 -27.41408 -26.64009 -26.51708 -25.13207 -23.55863 -22.94406 -22.11367 -21.00082 -20.15021 -19.20135 -18.08817 -17.10714 -16.59432 -16.57256 -16.49035 -16.39523 -16.26018 -15.67629 -15.53400 -15.16226 -14.92916 -14.72014 -14.34568 -14.24205 -13.88177 -13.82730 -12.99163 -12.89717 -12.75454 -12.46134 -12.27315 -12.26005 -12.22693 -12.15629 -11.96588 -11.73604 -11.51505 -11.31642 -11.04532 -10.94561 -10.87393 -10.40016 -10.25647 -10.05394 -9.98022 -9.93418 -9.62165 -9.46130 -8.87699 -8.62956 -8.06923 -7.38036 -6.23561 -4.28376 2.33008 2.68339 3.11317 3.21885 3.29353 3.32839 3.37092 3.41126 3.61033 3.87510 4.10649 4.33337 4.65552 4.69401 4.77520 4.82835 4.89552 5.02218 5.06057 5.08396 5.09460 5.11390 5.11668 5.12803 5.22334 5.26557 5.37102 5.38989 5.48182 5.54139 5.56667 5.83121 5.87882 6.02160 6.21599 6.39136 6.57765 6.65982 6.78296 6.86680 6.89679 7.00320 7.11191 7.52306 7.70544 7.81688 7.96364 8.09303 8.60685 8.68752 8.82513 9.37079 10.85130 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.002353 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.089732 B =11895.732990 C =13587.221999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.137 4.137 5 C 0.143 3.857 6 N -0.618 5.618 7 C 0.109 3.891 8 C 0.037 3.963 9 O -0.386 6.386 10 C 0.032 3.968 11 C 0.714 3.286 12 O -0.562 6.562 13 N -0.645 5.645 14 C 0.275 3.725 15 C -0.285 4.285 16 C 0.051 3.949 17 N -0.321 5.321 18 C 0.258 3.742 19 C -0.526 4.526 20 H 0.069 0.931 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.907 3.093 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.309 5.309 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.404 0.596 45 H 0.161 0.839 46 H 0.167 0.833 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.428 0.914 15.455 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.176 4.176 5 C 0.020 3.980 6 N -0.355 5.355 7 C -0.015 4.015 8 C -0.041 4.041 9 O -0.305 6.305 10 C -0.065 4.065 11 C 0.415 3.585 12 O -0.437 6.437 13 N -0.296 5.296 14 C 0.021 3.979 15 C -0.317 4.317 16 C -0.099 4.099 17 N -0.103 5.103 18 C 0.141 3.859 19 C -0.565 4.565 20 H 0.087 0.913 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.140 5.140 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.240 0.760 45 H 0.178 0.822 46 H 0.184 0.816 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.543 0.560 15.105 26.317 hybrid contribution 0.395 1.143 0.415 1.279 sum -21.148 1.703 15.520 26.287 Atomic orbital electron populations 1.22730 0.81097 1.02698 0.99941 1.87885 1.19644 1.28199 1.95427 1.22420 0.93839 0.84610 1.00283 1.21934 0.93019 0.98725 1.03892 1.21168 0.77275 0.95626 1.03962 1.46938 1.06901 1.77917 1.03744 1.21653 0.98140 0.95081 0.86616 1.23143 0.87904 0.93131 0.99938 1.87846 1.30289 1.24534 1.87791 1.22737 1.02151 0.83229 0.98363 1.15602 0.80826 0.77972 0.84069 1.90862 1.67181 1.56379 1.29264 1.41577 1.04942 1.76234 1.06849 1.18796 0.90422 1.02989 0.85666 1.21512 1.00923 1.19794 0.89435 1.22552 0.85919 1.02456 0.98998 1.49037 1.07820 1.51850 1.01556 1.19730 0.73602 0.99120 0.93467 1.21300 0.95767 1.13162 1.26244 0.91284 1.24950 0.97676 0.96655 0.94892 1.69927 1.15890 1.36163 1.31374 0.86283 0.80041 0.81370 0.78847 1.19620 1.20717 1.20788 1.77306 1.10983 1.28554 0.97154 0.94161 0.94023 0.89713 0.93249 0.92975 0.90421 0.91187 0.89408 0.89633 0.88730 0.88985 0.91950 0.92582 0.93963 0.89670 0.94101 0.76004 0.82197 0.81560 0.93760 0.92555 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.11 10.70 -35.23 -0.38 -4.48 16 3 C 0.07 0.58 5.94 37.16 0.22 0.80 16 4 C -0.14 -1.34 5.91 -26.73 -0.16 -1.50 16 5 C 0.14 1.41 5.23 -4.04 -0.02 1.39 16 6 N -0.62 -6.89 2.44 -179.42 -0.44 -7.33 16 7 C 0.11 0.87 5.58 -4.04 -0.02 0.85 16 8 C 0.04 0.30 6.28 37.16 0.23 0.54 16 9 O -0.39 -3.50 9.53 -35.23 -0.34 -3.83 16 10 C 0.03 0.23 11.01 101.05 1.11 1.34 16 11 C 0.71 10.94 8.25 -86.92 -0.72 10.23 16 12 O -0.56 -10.36 13.05 5.28 0.07 -10.29 16 13 N -0.64 -10.31 5.32 -15.51 -0.08 -10.39 16 14 C 0.28 5.62 8.11 -154.36 -1.25 4.37 16 15 C -0.29 -5.81 9.61 -39.84 -0.38 -6.19 16 16 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 18 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 19 C -0.53 -14.66 9.24 -34.44 -0.32 -14.98 16 20 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 23 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 N -0.31 -7.15 12.42 31.44 0.39 -6.76 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.74 7.12 -51.93 -0.37 0.37 16 36 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 37 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.09 0.65 6.36 -51.93 -0.33 0.32 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.40 5.31 6.55 -40.82 -0.27 5.04 16 45 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 46 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 47 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 49 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -34.27 410.10 -7.59 -41.86 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.96 Total: 3.95 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.52 Total: 7.17 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.38 Total: -56.87 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.64 Total: -18.61 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.27 -7.59 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071912177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.750 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds