Wall clock time and date at job start Tue Mar 31 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00436 * 2 1 4 4 C 1.38212 * 120.00038 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00095 * 359.74622 * 4 3 2 6 6 C 1.38211 * 119.99786 * 0.50723 * 5 4 3 7 7 C 1.50706 * 120.00152 * 179.76619 * 6 5 4 8 8 H 1.08999 * 115.54804 * 205.31188 * 7 6 5 9 9 C 1.52996 * 117.49545 * 350.97750 * 7 6 5 10 10 C 1.52995 * 117.49785 * 59.63531 * 7 6 5 11 11 H 1.09001 * 117.49938 * 145.01863 * 10 7 6 12 12 C 1.50709 * 117.49912 * 0.02562 * 10 7 6 13 13 O 1.21292 * 119.99784 * 359.97438 * 12 10 7 14 14 N 1.34777 * 119.99735 * 179.97438 * 12 10 7 15 15 C 1.40158 * 119.99575 * 179.97438 * 14 12 10 16 16 C 1.40410 * 125.97491 * 359.72219 * 15 14 12 17 17 C 1.35238 * 107.86724 * 179.82398 * 16 15 14 18 18 N 1.34966 * 107.86068 * 0.42901 * 17 16 15 19 19 C 1.46500 * 125.97450 * 179.69069 * 18 17 16 20 20 C 1.53004 * 109.46984 * 125.01822 * 19 18 17 21 21 C 1.50698 * 109.47015 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00174 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00131 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00107 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99890 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46761 * 90.00379 * 25 23 21 27 27 H 1.48495 * 109.47006 * 210.00697 * 25 23 21 28 28 H 1.48503 * 109.46827 * 330.00725 * 25 23 21 29 29 N 1.31222 * 125.97206 * 180.02562 * 15 14 12 30 30 C 1.38214 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47476 * 270.02983 * 1 2 3 32 32 H 1.09005 * 109.46928 * 30.02364 * 1 2 3 33 33 H 1.08994 * 109.47368 * 150.02031 * 1 2 3 34 34 H 1.08001 * 119.99576 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.99937 * 180.02562 * 4 3 2 36 36 H 1.08004 * 120.00282 * 180.27325 * 5 4 3 37 37 H 1.08999 * 117.49868 * 214.98123 * 9 7 6 38 38 H 1.09005 * 117.50319 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00338 * 0.02562 * 14 12 10 40 40 H 1.07997 * 126.06495 * 359.97438 * 16 15 14 41 41 H 1.07997 * 126.06833 * 180.15629 * 17 16 15 42 42 H 1.09003 * 109.46935 * 245.01586 * 19 18 17 43 43 H 1.08998 * 109.47308 * 5.01833 * 19 18 17 44 44 H 1.08999 * 109.47470 * 299.99979 * 20 19 18 45 45 H 1.09007 * 109.47215 * 60.00028 * 20 19 18 46 46 H 0.96998 * 119.99881 * 179.97438 * 24 23 21 47 47 H 1.07999 * 119.99762 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5023 0.0021 8 1 3.8010 -3.3531 -0.4223 9 6 5.8489 -2.4436 -0.2038 10 6 5.2760 -2.7732 1.1768 11 1 5.3630 -3.8024 1.5252 12 6 5.3790 -1.7147 2.2447 13 8 4.7290 -0.6948 2.1523 14 7 6.1933 -1.9015 3.3023 15 6 6.2895 -0.9169 4.2951 16 6 5.6025 0.3076 4.3117 17 6 5.9628 0.9703 5.4341 18 7 6.8510 0.2033 6.1007 19 6 7.5026 0.5445 7.3676 20 6 7.2499 -0.5682 8.3870 21 6 7.9206 -0.2175 9.6901 22 1 8.4724 0.7063 9.7819 23 6 7.8309 -1.0766 10.7648 24 7 8.4158 -0.7703 11.9021 25 14 6.8771 -2.6750 10.6057 26 1 7.7884 -3.7507 10.1395 27 1 6.3086 -3.0456 11.9265 28 1 5.7763 -2.4989 9.6246 29 7 7.0416 -0.9758 5.3688 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0003 0.0113 37 1 6.3126 -3.2560 -0.7632 38 1 6.3006 -1.4610 -0.3404 39 1 6.7134 -2.7170 3.3760 40 1 4.9077 0.6569 3.5623 41 1 5.6067 1.9428 5.7403 42 1 8.5752 0.6532 7.2068 43 1 7.0948 1.4823 7.7449 44 1 6.1773 -0.6770 8.5478 45 1 7.6577 -1.5061 8.0097 46 1 8.3523 -1.3745 12.6583 47 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:24 Heat of formation + Delta-G solvation = 103.294649 kcal Electronic energy + Delta-G solvation = -28175.612574 eV Core-core repulsion = 24326.323995 eV Total energy + Delta-G solvation = -3849.288579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21610 -40.44393 -38.93185 -36.81189 -35.06727 -33.87743 -32.59439 -32.02757 -30.89951 -29.84479 -28.98918 -26.98758 -25.74513 -24.32754 -23.81776 -22.26787 -21.60257 -21.36701 -20.29754 -19.84328 -19.43615 -17.66795 -17.31928 -16.66858 -16.42974 -15.73105 -15.45436 -15.25006 -14.91284 -14.76103 -14.35815 -14.26353 -14.03268 -13.88348 -13.46874 -13.25285 -13.12651 -12.81445 -12.72905 -12.65202 -12.42293 -12.38501 -12.09217 -11.80402 -11.31452 -11.21743 -11.12226 -10.91964 -10.79569 -10.75748 -10.52831 -10.11864 -10.08322 -9.91942 -9.81269 -9.38285 -8.73625 -8.63833 -8.52298 -8.21119 -7.85554 -6.15289 -4.15915 1.27848 1.45555 2.00582 2.41638 2.51460 3.23034 3.27340 3.34272 3.39195 3.40643 3.53390 3.86481 4.17576 4.37950 4.39491 4.49172 4.63832 4.75315 4.85604 4.91064 5.04982 5.08975 5.19304 5.23506 5.27867 5.31468 5.35151 5.43859 5.44485 5.64181 5.67569 5.70342 5.89339 5.94072 6.00466 6.03974 6.10903 6.11606 6.30444 6.35142 6.49141 6.56677 6.62273 7.03093 7.04115 7.09841 7.14674 7.31223 7.47134 7.68580 8.06459 8.19336 8.36183 8.85537 9.45967 10.97199 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.002261 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.064304 B =12379.361538 C =12730.841486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.118 4.118 4 C -0.123 4.123 5 C -0.056 4.056 6 C -0.049 4.049 7 C -0.077 4.077 8 H 0.122 0.878 9 C -0.146 4.146 10 C -0.180 4.180 11 H 0.131 0.869 12 C 0.542 3.458 13 O -0.493 6.493 14 N -0.630 5.630 15 C 0.276 3.724 16 C -0.277 4.277 17 C 0.057 3.943 18 N -0.345 5.345 19 C 0.143 3.857 20 C -0.020 4.020 21 C -0.527 4.527 22 H 0.076 0.924 23 C 0.073 3.927 24 N -0.898 5.898 25 Si 0.880 3.120 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.266 1.266 29 N -0.313 5.313 30 C -0.109 4.109 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.020 0.980 45 H 0.028 0.972 46 H 0.265 0.735 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 -1.462 -29.244 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.141 4.141 5 C -0.074 4.074 6 C -0.049 4.049 7 C -0.096 4.096 8 H 0.140 0.860 9 C -0.184 4.184 10 C -0.202 4.202 11 H 0.149 0.851 12 C 0.329 3.671 13 O -0.365 6.365 14 N -0.278 5.278 15 C 0.021 3.979 16 C -0.308 4.308 17 C -0.091 4.091 18 N -0.128 5.128 19 C 0.023 3.977 20 C -0.058 4.058 21 C -0.566 4.566 22 H 0.094 0.906 23 C -0.129 4.129 24 N -0.536 5.536 25 Si 0.707 3.293 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.191 1.191 29 N -0.143 5.143 30 C -0.127 4.127 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.247 0.753 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.039 0.961 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.578 -1.439 -28.360 30.303 hybrid contribution -0.603 -0.908 0.083 1.093 sum -11.181 -2.347 -28.278 30.499 Atomic orbital electron populations 1.20739 0.91651 1.02252 1.02117 1.19724 0.95631 0.93168 1.01377 1.20919 0.94290 0.97140 1.01230 1.20942 0.94157 0.97747 1.01233 1.20677 0.99088 0.91787 0.95843 1.18765 0.93025 0.92546 1.00548 1.21089 0.91690 0.97652 0.99131 0.85997 1.23198 0.95802 1.04249 0.95105 1.22244 1.08698 0.99605 0.89604 0.85137 1.19716 0.78680 0.87481 0.81261 1.90745 1.42539 1.28029 1.75198 1.42578 1.44885 1.20062 1.20287 1.19113 0.97982 0.90566 0.90198 1.21645 1.10920 0.95560 1.02680 1.22630 0.94362 0.98484 0.93628 1.48798 1.33246 1.11855 1.18908 1.22068 0.97197 1.00479 0.77919 1.19826 0.97659 0.94325 0.93951 1.20895 1.33874 1.07846 0.93963 0.90621 1.24939 0.94924 0.98040 0.95034 1.69893 1.43751 1.37463 1.02449 0.86764 0.81001 0.84051 0.77443 1.20076 1.21236 1.19085 1.77330 1.25326 1.05893 1.05795 1.20641 0.93132 0.97278 1.01685 0.91457 0.91888 0.91929 0.86768 0.86644 0.87088 0.87050 0.87633 0.75289 0.81717 0.81041 0.90157 0.88894 0.96132 0.95375 0.92486 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.10 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 5 C -0.06 -0.62 6.15 -39.58 -0.24 -0.86 16 6 C -0.05 -0.50 4.38 -104.62 -0.46 -0.96 16 7 C -0.08 -0.60 6.04 -91.77 -0.55 -1.15 16 8 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 9 C -0.15 -0.93 9.58 -26.70 -0.26 -1.19 16 10 C -0.18 -1.43 6.19 -91.73 -0.57 -1.99 16 11 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 12 C 0.54 6.46 7.43 -10.98 -0.08 6.38 16 13 O -0.49 -7.01 8.80 5.55 0.05 -6.96 16 14 N -0.63 -8.21 5.45 -11.13 -0.06 -8.27 16 15 C 0.28 4.70 8.11 -154.39 -1.25 3.45 16 16 C -0.28 -4.62 9.61 -39.83 -0.38 -5.00 16 17 C 0.06 0.93 11.44 -17.24 -0.20 0.73 16 18 N -0.35 -6.52 3.68 -61.38 -0.23 -6.75 16 19 C 0.14 2.80 6.44 -4.04 -0.03 2.77 16 20 C -0.02 -0.47 4.23 -27.88 -0.12 -0.59 16 21 C -0.53 -14.66 9.66 -34.44 -0.33 -14.99 16 22 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 25 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 29 N -0.31 -6.11 12.43 31.44 0.39 -5.72 16 30 C -0.11 -1.12 9.39 -39.58 -0.37 -1.49 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.11 1.18 5.76 -52.48 -0.30 0.87 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.75 6.19 -51.93 -0.32 0.43 16 39 H 0.41 4.31 8.82 -40.82 -0.36 3.95 16 40 H 0.17 2.72 5.92 -52.49 -0.31 2.41 16 41 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 44 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 45 H 0.03 0.71 7.57 -51.92 -0.39 0.31 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -34.38 387.24 -10.59 -44.97 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.71 Total: 4.37 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -5.98 Total: -18.37 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.88 Total: -47.20 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.05 Total: -6.96 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.38 -10.59 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.264 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds