Wall clock time and date at job start Tue Mar 31 2020 04:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00436 * 2 1 4 4 C 1.38212 * 120.00038 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00095 * 359.74622 * 4 3 2 6 6 C 1.38211 * 119.99786 * 0.50723 * 5 4 3 7 7 C 1.50706 * 120.00152 * 179.76619 * 6 5 4 8 8 H 1.08999 * 115.54804 * 205.31188 * 7 6 5 9 9 C 1.52996 * 117.49545 * 350.97750 * 7 6 5 10 10 C 1.52995 * 117.49785 * 59.63531 * 7 6 5 11 11 H 1.09001 * 117.49938 * 145.01863 * 10 7 6 12 12 C 1.50709 * 117.49912 * 0.02562 * 10 7 6 13 13 O 1.21292 * 119.99784 * 359.97438 * 12 10 7 14 14 N 1.34777 * 119.99735 * 179.97438 * 12 10 7 15 15 C 1.40158 * 119.99575 * 179.97438 * 14 12 10 16 16 C 1.40410 * 125.97491 * 359.72219 * 15 14 12 17 17 C 1.35238 * 107.86724 * 179.82398 * 16 15 14 18 18 N 1.34966 * 107.86068 * 0.42901 * 17 16 15 19 19 C 1.46500 * 125.97450 * 179.69069 * 18 17 16 20 20 C 1.53004 * 109.46984 * 125.01822 * 19 18 17 21 21 C 1.50698 * 109.47015 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00174 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00131 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00107 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99890 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46761 * 90.00379 * 25 23 21 27 27 H 1.48495 * 109.47006 * 210.00697 * 25 23 21 28 28 H 1.48503 * 109.46827 * 330.00725 * 25 23 21 29 29 N 1.31222 * 125.97206 * 180.02562 * 15 14 12 30 30 C 1.38214 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47476 * 270.02983 * 1 2 3 32 32 H 1.09005 * 109.46928 * 30.02364 * 1 2 3 33 33 H 1.08994 * 109.47368 * 150.02031 * 1 2 3 34 34 H 1.08001 * 119.99576 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.99937 * 180.02562 * 4 3 2 36 36 H 1.08004 * 120.00282 * 180.27325 * 5 4 3 37 37 H 1.08999 * 117.49868 * 214.98123 * 9 7 6 38 38 H 1.09005 * 117.50319 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00338 * 0.02562 * 14 12 10 40 40 H 1.07997 * 126.06495 * 359.97438 * 16 15 14 41 41 H 1.07997 * 126.06833 * 180.15629 * 17 16 15 42 42 H 1.09003 * 109.46935 * 245.01586 * 19 18 17 43 43 H 1.08998 * 109.47308 * 5.01833 * 19 18 17 44 44 H 1.08999 * 109.47470 * 299.99979 * 20 19 18 45 45 H 1.09007 * 109.47215 * 60.00028 * 20 19 18 46 46 H 0.96998 * 119.99881 * 179.97438 * 24 23 21 47 47 H 1.07999 * 119.99762 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5023 0.0021 8 1 3.8010 -3.3531 -0.4223 9 6 5.8489 -2.4436 -0.2038 10 6 5.2760 -2.7732 1.1768 11 1 5.3630 -3.8024 1.5252 12 6 5.3790 -1.7147 2.2447 13 8 4.7290 -0.6948 2.1523 14 7 6.1933 -1.9015 3.3023 15 6 6.2895 -0.9169 4.2951 16 6 5.6025 0.3076 4.3117 17 6 5.9628 0.9703 5.4341 18 7 6.8510 0.2033 6.1007 19 6 7.5026 0.5445 7.3676 20 6 7.2499 -0.5682 8.3870 21 6 7.9206 -0.2175 9.6901 22 1 8.4724 0.7063 9.7819 23 6 7.8309 -1.0766 10.7648 24 7 8.4158 -0.7703 11.9021 25 14 6.8771 -2.6750 10.6057 26 1 7.7884 -3.7507 10.1395 27 1 6.3086 -3.0456 11.9265 28 1 5.7763 -2.4989 9.6246 29 7 7.0416 -0.9758 5.3688 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0003 0.0113 37 1 6.3126 -3.2560 -0.7632 38 1 6.3006 -1.4610 -0.3404 39 1 6.7134 -2.7170 3.3760 40 1 4.9077 0.6569 3.5623 41 1 5.6067 1.9428 5.7403 42 1 8.5752 0.6532 7.2068 43 1 7.0948 1.4823 7.7449 44 1 6.1773 -0.6770 8.5478 45 1 7.6577 -1.5061 8.0097 46 1 8.3523 -1.3745 12.6583 47 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072287828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:23 Heat of formation + Delta-G solvation = 84.672481 kcal Electronic energy + Delta-G solvation = -28176.420092 eV Core-core repulsion = 24326.323995 eV Total energy + Delta-G solvation = -3850.096097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.37561 -41.38397 -39.78701 -37.54709 -36.38698 -35.50623 -33.93219 -33.26095 -31.68470 -31.19962 -30.59260 -27.67820 -27.08541 -25.60843 -24.45179 -23.13158 -22.92173 -22.69601 -21.45261 -20.99960 -20.26306 -19.19169 -18.47205 -18.06530 -17.26386 -16.85301 -16.58986 -16.42638 -16.22401 -15.81142 -15.69329 -15.12500 -15.05032 -14.89845 -14.71535 -14.56429 -14.35127 -13.93498 -13.89887 -13.80203 -13.60814 -13.10504 -13.05474 -13.00552 -12.68779 -12.52222 -12.18899 -11.96973 -11.92445 -11.76329 -11.66670 -11.60893 -11.48880 -11.46063 -11.37808 -10.84017 -10.76025 -9.84999 -9.49096 -9.17844 -8.98067 -8.36974 -6.41688 0.51447 0.66867 0.86904 1.25175 1.29676 1.31273 1.40121 1.42918 2.12698 2.24193 2.28733 2.77308 2.98368 3.18318 3.46608 3.72991 3.77899 3.90173 3.97390 4.08109 4.10927 4.15776 4.30654 4.31214 4.38348 4.52561 4.60438 4.62223 4.65950 4.72108 4.83956 4.84462 4.86058 4.89791 4.97286 5.06524 5.11281 5.14658 5.18755 5.27585 5.32523 5.40886 5.47944 5.72557 5.82100 5.86089 5.86814 6.11275 6.17817 6.23701 6.30355 6.65034 6.91162 7.14592 7.23613 8.78532 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.002261 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.064304 B =12379.361538 C =12730.841486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.134 4.134 4 C -0.140 4.140 5 C -0.071 4.071 6 C -0.057 4.057 7 C -0.083 4.083 8 H 0.148 0.852 9 C -0.130 4.130 10 C -0.181 4.181 11 H 0.160 0.840 12 C 0.536 3.464 13 O -0.517 6.517 14 N -0.627 5.627 15 C 0.280 3.720 16 C -0.289 4.289 17 C 0.066 3.934 18 N -0.363 5.363 19 C 0.154 3.846 20 C -0.010 4.010 21 C -0.531 4.531 22 H 0.052 0.948 23 C 0.017 3.983 24 N -0.940 5.940 25 Si 0.943 3.057 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.355 5.355 30 C -0.124 4.124 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.423 0.577 40 H 0.166 0.834 41 H 0.208 0.792 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.014 0.986 45 H 0.016 0.984 46 H 0.269 0.731 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -3.013 -31.225 33.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.152 4.152 4 C -0.158 4.158 5 C -0.089 4.089 6 C -0.057 4.057 7 C -0.101 4.101 8 H 0.165 0.835 9 C -0.167 4.167 10 C -0.202 4.202 11 H 0.178 0.822 12 C 0.325 3.675 13 O -0.391 6.391 14 N -0.277 5.277 15 C 0.024 3.976 16 C -0.319 4.319 17 C -0.081 4.081 18 N -0.146 5.146 19 C 0.034 3.966 20 C -0.048 4.048 21 C -0.569 4.569 22 H 0.070 0.930 23 C -0.182 4.182 24 N -0.579 5.579 25 Si 0.768 3.232 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.187 1.187 29 N -0.186 5.186 30 C -0.142 4.142 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.161 0.839 38 H 0.112 0.888 39 H 0.260 0.740 40 H 0.183 0.817 41 H 0.225 0.775 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.078 0.922 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.859 -3.001 -30.376 32.747 hybrid contribution -0.214 -0.333 0.605 0.723 sum -12.073 -3.334 -29.771 32.298 Atomic orbital electron populations 1.20764 0.90048 1.03391 1.02339 1.20098 0.97029 0.93169 1.00777 1.21150 0.94326 0.98023 1.01684 1.21157 0.94733 0.98202 1.01702 1.20776 0.99088 0.92358 0.96646 1.19089 0.93435 0.93500 0.99660 1.21265 0.92475 0.97210 0.99199 0.83453 1.23327 0.94881 1.04796 0.93702 1.22311 1.09677 0.99463 0.88724 0.82231 1.20554 0.77590 0.88050 0.81322 1.90740 1.43318 1.29396 1.75631 1.42788 1.45371 1.19776 1.19739 1.19481 0.96655 0.91355 0.90077 1.21779 1.11284 0.95809 1.03072 1.23223 0.92693 0.99299 0.92843 1.48630 1.34445 1.12559 1.18966 1.21787 0.97632 0.99601 0.77574 1.19627 0.96384 0.95423 0.93363 1.21194 1.33237 1.06837 0.95637 0.92990 1.25784 0.96045 1.01540 0.94801 1.70011 1.45531 1.39019 1.03382 0.85767 0.79729 0.80031 0.77710 1.19398 1.20354 1.18697 1.77268 1.27217 1.06940 1.07128 1.20957 0.93458 0.98026 1.01726 0.91563 0.90951 0.90667 0.85639 0.86239 0.87376 0.83901 0.88775 0.73973 0.81667 0.77520 0.90278 0.86612 0.96808 0.96600 0.92198 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.23 0.71 -0.82 16 2 C -0.11 -2.18 5.88 -19.87 -0.12 -2.29 16 3 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16 4 C -0.14 -3.10 10.05 22.27 0.22 -2.87 16 5 C -0.07 -1.54 6.15 22.27 0.14 -1.41 16 6 C -0.06 -1.10 4.38 -19.86 -0.09 -1.19 16 7 C -0.08 -1.06 6.04 -11.54 -0.07 -1.13 16 8 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 9 C -0.13 -1.27 9.58 30.62 0.29 -0.98 16 10 C -0.18 -2.35 6.19 -11.52 -0.07 -2.42 16 11 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 12 C 0.54 12.01 7.43 87.66 0.65 12.66 16 13 O -0.52 -14.38 8.80 -3.07 -0.03 -14.41 16 14 N -0.63 -15.58 5.45 -307.50 -1.68 -17.26 16 15 C 0.28 9.33 8.11 133.32 1.08 10.41 16 16 C -0.29 -9.37 9.61 22.11 0.21 -9.16 16 17 C 0.07 2.06 11.44 83.52 0.96 3.01 16 18 N -0.36 -13.38 3.68 -348.10 -1.28 -14.66 16 19 C 0.15 5.93 6.44 86.38 0.56 6.48 16 20 C -0.01 -0.47 4.23 29.85 0.13 -0.34 16 21 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 22 H 0.05 3.09 7.99 -2.91 -0.02 3.06 16 23 C 0.02 0.97 5.47 84.66 0.46 1.44 16 24 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 25 Si 0.94 45.40 27.47 68.60 1.88 47.28 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.26 -12.38 6.54 99.48 0.65 -11.72 16 29 N -0.35 -13.68 12.43 -54.45 -0.68 -14.35 16 30 C -0.12 -2.38 9.39 22.27 0.21 -2.17 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 33 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 34 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.11 2.31 5.76 -2.91 -0.02 2.29 16 37 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 1.18 6.19 -2.38 -0.01 1.16 16 39 H 0.42 8.24 8.82 -92.71 -0.82 7.42 16 40 H 0.17 5.38 5.92 -2.91 -0.02 5.36 16 41 H 0.21 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.12 3.87 8.07 -2.39 -0.02 3.85 16 44 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 45 H 0.02 0.79 7.57 -2.38 -0.02 0.77 16 46 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -75.31 387.24 4.38 -70.93 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.12 Total: 22.80 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.74 Total: -22.89 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.33 Total: -103.71 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.03 Total: -14.41 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -75.31 4.38 -70.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.600 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds