Wall clock time and date at job start Tue Mar 31 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46581 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00066 * 2 1 3 5 5 O 1.21282 * 119.99721 * 343.44947 * 4 2 1 6 6 N 1.34774 * 120.00056 * 163.45469 * 4 2 1 7 7 C 1.44675 * 118.54534 * 185.01241 * 6 4 2 8 8 C 1.54952 * 109.52301 * 269.05026 * 7 6 4 9 9 C 1.47544 * 109.73132 * 290.52438 * 8 7 6 10 10 N 1.46262 * 114.37328 * 62.22237 * 9 8 7 11 11 C 1.46900 * 110.99677 * 148.55334 * 10 9 8 12 12 H 1.08998 * 109.47565 * 53.50139 * 11 10 9 13 13 C 1.52998 * 109.46928 * 293.49661 * 11 10 9 14 14 C 1.50708 * 109.47127 * 173.50014 * 11 10 9 15 15 O 1.21288 * 119.99653 * 33.26619 * 14 11 10 16 16 N 1.34774 * 120.00202 * 213.26670 * 14 11 10 17 17 C 1.46497 * 119.99625 * 354.32332 * 16 14 11 18 18 C 1.46502 * 119.99829 * 174.32088 * 16 14 11 19 19 C 1.50707 * 109.46879 * 90.00276 * 18 16 14 20 20 H 1.08002 * 119.99866 * 359.97438 * 19 18 16 21 21 C 1.37870 * 119.99985 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99725 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00294 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46858 * 59.99202 * 23 21 19 25 25 H 1.48493 * 109.47144 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46804 * 299.99843 * 23 21 19 27 27 C 1.44765 * 110.63738 * 272.24423 * 10 9 8 28 28 C 1.47775 * 118.54707 * 4.98361 * 6 4 2 29 29 H 1.09001 * 109.47123 * 299.99588 * 1 2 3 30 30 H 1.09000 * 109.47379 * 60.00231 * 1 2 3 31 31 H 1.09009 * 109.46823 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47123 * 240.00412 * 2 1 3 33 33 H 1.09002 * 109.47148 * 49.53200 * 3 2 1 34 34 H 1.09007 * 109.46610 * 169.52695 * 3 2 1 35 35 H 1.08993 * 109.47390 * 289.52615 * 3 2 1 36 36 H 1.09001 * 109.46561 * 149.03792 * 7 6 4 37 37 H 1.09002 * 109.45477 * 29.05909 * 7 6 4 38 38 H 1.09002 * 109.42537 * 170.44365 * 8 7 6 39 39 H 1.09004 * 109.38204 * 50.57874 * 8 7 6 40 40 H 1.08993 * 108.50451 * 300.94975 * 9 8 7 41 41 H 1.09004 * 108.49681 * 183.48563 * 9 8 7 42 42 H 1.09000 * 109.47404 * 299.73154 * 13 11 10 43 43 H 1.09005 * 109.47078 * 179.73528 * 13 11 10 44 44 H 1.08997 * 109.47209 * 59.73549 * 13 11 10 45 45 H 1.09001 * 109.47525 * 93.40109 * 17 16 14 46 46 H 1.09007 * 109.46970 * 213.39561 * 17 16 14 47 47 H 1.08991 * 109.47362 * 333.39697 * 17 16 14 48 48 H 1.09000 * 109.46636 * 210.00004 * 18 16 14 49 49 H 1.08991 * 109.47172 * 330.00278 * 18 16 14 50 50 H 0.97002 * 119.99331 * 180.02562 * 22 21 19 51 51 H 1.09009 * 109.43360 * 214.22921 * 27 10 9 52 52 H 1.08999 * 109.43498 * 334.09851 * 27 10 9 53 53 H 1.08998 * 109.06651 * 258.67024 * 28 6 4 54 54 H 1.08997 * 109.06490 * 17.60891 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2853 -0.9050 2.1658 6 7 3.3119 -1.1294 1.2914 7 6 3.7318 -1.9037 2.4391 8 6 4.2742 -0.9522 3.5353 9 6 5.5537 -0.3637 3.0955 10 7 5.4568 0.4598 1.8906 11 6 6.4447 1.5467 1.9150 12 1 7.4378 1.1314 2.0860 13 6 6.0999 2.5240 3.0406 14 6 6.4246 2.2736 0.5950 15 8 5.3849 2.3864 -0.0193 16 7 7.5618 2.7983 0.0972 17 6 8.7908 2.7719 0.8941 18 6 7.5689 3.3950 -1.2408 19 6 7.2349 4.8610 -1.1388 20 1 7.0367 5.3038 -0.1738 21 6 7.1823 5.6369 -2.2772 22 7 7.4242 5.0977 -3.4521 23 14 6.7690 7.4542 -2.1508 24 1 7.7788 8.1334 -1.2999 25 1 6.7773 8.0592 -3.5069 26 1 5.4227 7.6146 -1.5449 27 6 5.6099 -0.3537 0.7030 28 6 4.2236 -0.7782 0.1827 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.5321 2.0074 0.7818 34 1 3.1138 1.4483 0.1868 35 1 1.8371 1.8996 -0.9685 36 1 4.5167 -2.5988 2.1409 37 1 2.8817 -2.4621 2.8311 38 1 4.4307 -1.5129 4.4569 39 1 3.5512 -0.1562 3.7135 40 1 6.2595 -1.1724 2.9060 41 1 5.9474 0.2518 3.9044 42 1 5.1087 2.9430 2.8671 43 1 6.8356 3.3280 3.0618 44 1 6.1098 1.9972 3.9948 45 1 9.3685 1.8827 0.6418 46 1 9.3821 3.6622 0.6797 47 1 8.5364 2.7513 1.9537 48 1 8.5571 3.2775 -1.6856 49 1 6.8278 2.8960 -1.8650 50 1 7.3875 5.6437 -4.2531 51 1 6.1256 0.2211 -0.0664 52 1 6.1942 -1.2416 0.9443 53 1 4.3382 -1.6425 -0.4714 54 1 3.7905 0.0435 -0.3876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072291824.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:05 Heat of formation + Delta-G solvation = -71.357820 kcal Electronic energy + Delta-G solvation = -32764.765656 eV Core-core repulsion = 28736.427753 eV Total energy + Delta-G solvation = -4028.337904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.74752 -40.86973 -38.94781 -36.52989 -36.23359 -35.67676 -34.69250 -33.65744 -32.53355 -29.77768 -28.43502 -28.24112 -27.53957 -27.18142 -25.63314 -24.38917 -23.61021 -22.42622 -21.54754 -19.98422 -19.34577 -18.63436 -18.36293 -17.97114 -17.52492 -17.25223 -16.71482 -16.40116 -16.27427 -15.74338 -15.58854 -15.46180 -14.99079 -14.79171 -14.56717 -14.30979 -14.09374 -13.98544 -13.85221 -13.55397 -13.44322 -13.27439 -13.25465 -13.13417 -13.10117 -12.86492 -12.81295 -12.77091 -12.63520 -12.49411 -12.43259 -12.17586 -12.13100 -12.01030 -11.90363 -11.71992 -11.67543 -11.50868 -10.61425 -10.61136 -10.34738 -9.53096 -9.34845 -9.20550 -8.19599 -6.32970 1.37110 1.40591 1.47526 1.65062 1.85251 2.14230 2.26769 2.43467 2.93489 3.10260 3.51710 3.65444 3.89052 3.94021 3.94608 4.03339 4.08158 4.11232 4.15133 4.24264 4.39901 4.42473 4.50075 4.56579 4.58104 4.63937 4.69861 4.72115 4.73480 4.77516 4.82940 4.87254 4.89328 4.94356 4.96060 4.96596 5.02660 5.07253 5.11009 5.26210 5.26748 5.28488 5.36281 5.44080 5.60324 5.77464 5.87794 6.03191 6.10685 6.24352 6.39810 6.74420 6.85965 7.25506 7.33039 7.57500 8.86515 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003741 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.709224 B = 7483.106737 C = 8822.346555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.516 3.484 5 O -0.584 6.584 6 N -0.587 5.587 7 C 0.114 3.886 8 C -0.123 4.123 9 C 0.057 3.943 10 N -0.528 5.528 11 C 0.080 3.920 12 H 0.085 0.915 13 C -0.133 4.133 14 C 0.502 3.498 15 O -0.562 6.562 16 N -0.613 5.613 17 C 0.077 3.923 18 C 0.266 3.734 19 C -0.537 4.537 20 H 0.049 0.951 21 C 0.012 3.988 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.281 1.281 27 C 0.050 3.950 28 C 0.109 3.891 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.021 0.979 49 H 0.001 0.999 50 H 0.266 0.734 51 H 0.058 0.942 52 H 0.068 0.932 53 H 0.086 0.914 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -15.250 12.746 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.305 3.695 5 O -0.465 6.465 6 N -0.317 5.317 7 C -0.009 4.009 8 C -0.162 4.162 9 C -0.070 4.070 10 N -0.254 5.254 11 C -0.031 4.031 12 H 0.102 0.898 13 C -0.190 4.190 14 C 0.289 3.711 15 O -0.440 6.440 16 N -0.346 5.346 17 C -0.065 4.065 18 C 0.145 3.855 19 C -0.576 4.576 20 H 0.067 0.933 21 C -0.187 4.187 22 N -0.566 5.566 23 Si 0.784 3.216 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.206 1.206 27 C -0.079 4.079 28 C -0.013 4.013 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.039 0.961 49 H 0.019 0.981 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.086 0.914 53 H 0.104 0.896 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.988 -15.056 12.706 19.801 hybrid contribution 0.530 1.078 -0.552 1.322 sum -1.458 -13.979 12.154 18.581 Atomic orbital electron populations 1.21587 0.92311 1.02274 1.02229 1.21315 0.98348 0.97084 0.96475 1.21821 1.02562 0.93695 1.01943 1.20974 0.81985 0.77696 0.88868 1.90606 1.57401 1.58308 1.40139 1.47606 1.09229 1.52734 1.22164 1.21559 1.00280 0.93293 0.85764 1.21294 0.97014 0.99011 0.98892 1.21122 0.97691 0.96209 0.91959 1.60569 1.50303 1.11581 1.02899 1.21672 0.95871 0.92971 0.92606 0.89763 1.21756 1.01672 0.98418 0.97182 1.20929 0.83101 0.79512 0.87535 1.90632 1.31602 1.60000 1.61761 1.48202 1.10445 1.57795 1.18122 1.21921 0.86118 1.02598 0.95899 1.18669 0.95638 0.91842 0.79386 1.21648 1.47644 0.95245 0.93071 0.93310 1.25730 0.94969 1.03140 0.94836 1.70025 1.50208 1.37863 0.98535 0.85606 0.78732 0.79808 0.77501 1.18721 1.20409 1.20627 1.22296 0.96245 0.96382 0.92958 1.22282 0.90170 1.00888 0.88003 0.93392 0.90513 0.92261 0.87752 0.93814 0.90879 0.91661 0.88719 0.91152 0.87845 0.94026 0.92455 0.89887 0.94047 0.91224 0.88827 0.91274 0.91766 0.89175 0.96124 0.98052 0.92517 0.92371 0.91355 0.89637 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.60 71.98 0.62 -2.48 16 2 C -0.11 -2.98 2.39 -11.54 -0.03 -3.01 16 3 C -0.14 -4.48 8.67 71.98 0.62 -3.85 16 4 C 0.52 15.32 6.82 87.66 0.60 15.92 16 5 O -0.58 -20.71 15.46 -3.04 -0.05 -20.75 16 6 N -0.59 -14.53 2.53 -817.16 -2.07 -16.60 16 7 C 0.11 2.28 5.40 87.39 0.47 2.75 16 8 C -0.12 -2.32 6.02 29.56 0.18 -2.14 16 9 C 0.06 1.00 4.75 84.72 0.40 1.40 16 10 N -0.53 -13.00 3.83 -890.99 -3.41 -16.42 16 11 C 0.08 2.08 1.57 44.17 0.07 2.15 16 12 H 0.08 1.72 6.63 -2.39 -0.02 1.70 16 13 C -0.13 -3.19 9.00 71.98 0.65 -2.55 16 14 C 0.50 18.96 5.01 87.66 0.44 19.40 16 15 O -0.56 -26.23 14.36 -3.05 -0.04 -26.27 16 16 N -0.61 -24.13 2.86 -851.12 -2.43 -26.56 16 17 C 0.08 2.13 9.82 127.77 1.26 3.38 16 18 C 0.27 13.65 5.14 85.63 0.44 14.09 16 19 C -0.54 -30.17 9.39 25.60 0.24 -29.93 16 20 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 21 C 0.01 0.70 5.46 84.65 0.46 1.16 16 22 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 23 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 C 0.05 1.21 4.83 87.05 0.42 1.63 16 28 C 0.11 2.63 5.69 86.48 0.49 3.12 16 29 H 0.05 1.31 7.93 -2.39 -0.02 1.29 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.10 2.42 7.36 -2.39 -0.02 2.40 16 33 H 0.04 1.42 8.11 -2.39 -0.02 1.40 16 34 H 0.07 2.66 4.92 -2.38 -0.01 2.65 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 37 H 0.07 1.57 7.32 -2.39 -0.02 1.55 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.78 7.18 -2.39 -0.02 0.76 16 41 H 0.08 1.25 5.74 -2.39 -0.01 1.24 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.60 7.28 -2.38 -0.02 1.58 16 44 H 0.09 1.65 6.27 -2.39 -0.01 1.63 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 1.91 8.10 -2.38 -0.02 1.89 16 47 H 0.09 1.89 5.58 -2.39 -0.01 1.88 16 48 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 49 H 0.00 0.08 7.51 -2.39 -0.02 0.06 16 50 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 51 H 0.06 1.77 5.64 -2.38 -0.01 1.76 16 52 H 0.07 1.24 7.14 -2.39 -0.02 1.23 16 53 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.08 2.38 4.08 -2.39 -0.01 2.37 16 Total: -1.00 -74.78 405.95 2.51 -72.27 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.88 Total: 21.26 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 7.33 Total: 21.05 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -7.63 Total: -114.08 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.09 Total: -47.03 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.78 2.51 -72.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072291824.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.911 kcal (2) G-P(sol) polarization free energy of solvation -74.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds