Wall clock time and date at job start Tue Mar 31 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35892 * 116.99932 * 2 1 4 4 C 1.38806 * 120.02280 * 0.02562 * 3 2 1 5 5 C 1.38167 * 120.08437 * 179.97438 * 4 3 2 6 6 C 1.38169 * 120.12632 * 359.75474 * 5 4 3 7 7 C 1.38882 * 120.03584 * 0.49930 * 6 5 4 8 8 N 1.39941 * 120.04275 * 179.77018 * 7 6 5 9 9 C 1.34774 * 119.99900 * 326.54273 * 8 7 6 10 10 O 1.21590 * 120.00146 * 354.63858 * 9 8 7 11 11 N 1.34783 * 120.00137 * 174.63191 * 9 8 7 12 12 C 1.46503 * 119.99743 * 0.02562 * 11 9 8 13 13 C 1.50701 * 109.46784 * 89.99565 * 12 11 9 14 14 H 1.07993 * 120.00236 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99382 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00036 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00172 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47124 * 90.00100 * 17 15 13 19 19 H 1.48503 * 109.46877 * 209.99790 * 17 15 13 20 20 H 1.48494 * 109.47008 * 329.99944 * 17 15 13 21 21 C 1.46496 * 119.99969 * 179.97438 * 11 9 8 22 22 C 1.50702 * 109.47470 * 270.00344 * 21 11 9 23 23 C 1.38674 * 120.41860 * 269.72540 * 22 21 11 24 24 C 1.38633 * 118.41805 * 179.77844 * 23 22 21 25 25 C 1.38230 * 119.16120 * 0.51640 * 24 23 22 26 26 N 1.31850 * 120.76079 * 359.72162 * 25 24 23 27 27 C 1.31886 * 121.72908 * 0.02562 * 26 25 24 28 28 C 1.38594 * 120.01927 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47561 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47225 * 299.99646 * 1 2 3 32 32 H 1.07997 * 119.95588 * 359.95796 * 4 3 2 33 33 H 1.07997 * 119.93826 * 180.02562 * 5 4 3 34 34 H 1.07996 * 119.98244 * 180.27451 * 6 5 4 35 35 H 0.97003 * 120.00516 * 146.54010 * 8 7 6 36 36 H 1.09003 * 109.46876 * 209.99426 * 12 11 9 37 37 H 1.08996 * 109.46936 * 329.99531 * 12 11 9 38 38 H 0.96993 * 119.99875 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47183 * 30.00523 * 21 11 9 40 40 H 1.09000 * 109.47311 * 150.00698 * 21 11 9 41 41 H 1.07997 * 120.78825 * 0.02562 * 23 22 21 42 42 H 1.07999 * 120.41448 * 180.22170 * 24 23 22 43 43 H 1.07999 * 119.61643 * 179.74590 * 25 24 23 44 44 H 1.08004 * 119.61432 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.06015 * 0.04207 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2904 2.3752 0.0005 5 6 1.9163 3.6070 0.0011 6 6 3.2958 3.6838 0.0062 7 6 4.0568 2.5221 0.0003 8 7 5.4541 2.5998 0.0007 9 6 6.0728 3.6127 -0.6378 10 8 5.4241 4.4035 -1.2952 11 7 7.4106 3.7491 -0.5475 12 6 8.1923 2.7960 0.2442 13 6 8.6215 1.6478 -0.6324 14 1 8.3398 1.6296 -1.6748 15 6 9.3738 0.6205 -0.1035 16 7 9.7488 -0.3814 -0.8686 17 14 9.8616 0.6524 1.6994 18 1 8.8177 -0.0286 2.5068 19 1 11.1586 -0.0497 1.8737 20 1 9.9964 2.0606 2.1509 21 6 8.0832 4.8498 -1.2420 22 6 8.4751 4.4049 -2.6275 23 6 9.7136 3.8238 -2.8543 24 6 10.0293 3.4257 -4.1441 25 6 9.1099 3.6296 -5.1560 26 7 7.9433 4.1900 -4.9043 27 6 7.6072 4.5764 -3.6890 28 6 3.4299 1.2838 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2119 2.3183 0.0003 33 1 1.3261 4.5115 0.0019 34 1 3.7826 4.6478 0.0111 35 1 5.9773 1.9247 0.4604 36 1 9.0738 3.2950 0.6468 37 1 7.5820 2.4185 1.0646 38 1 10.2777 -1.1043 -0.4964 39 1 7.4076 5.7023 -1.3116 40 1 8.9759 5.1381 -0.6870 41 1 10.4139 3.6811 -2.0446 42 1 10.9834 2.9664 -4.3565 43 1 9.3499 3.3260 -6.1643 44 1 6.6422 5.0316 -3.5213 45 1 4.0194 0.3789 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072306104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:23 Heat of formation + Delta-G solvation = 12.901622 kcal Electronic energy + Delta-G solvation = -29528.010950 eV Core-core repulsion = 25511.658062 eV Total energy + Delta-G solvation = -4016.352888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51029 -39.78965 -39.23664 -37.32634 -35.41320 -34.26028 -32.79890 -32.01002 -31.16115 -30.50046 -28.87348 -28.23669 -27.27231 -25.79564 -23.09593 -22.80897 -22.53247 -22.16465 -21.30512 -19.46694 -18.22074 -17.45358 -17.19817 -16.53484 -16.13991 -15.99085 -15.78137 -15.71390 -15.55229 -15.11757 -14.79580 -14.39085 -14.12601 -13.61940 -13.40324 -13.35794 -13.18995 -12.88095 -12.58628 -12.55144 -12.45931 -12.28630 -12.19274 -11.82338 -11.69721 -11.26894 -11.11189 -11.07368 -10.88441 -10.79207 -10.38615 -9.93729 -9.77692 -9.58709 -9.17434 -8.97367 -8.82542 -8.51906 -8.26818 -7.98441 -7.63203 -6.29743 -4.33116 1.49514 1.58293 1.67334 1.87324 2.99440 3.08587 3.15798 3.19880 3.46926 3.58142 4.11273 4.16530 4.28245 4.54424 4.88419 4.93842 4.98423 5.07174 5.10522 5.13981 5.25319 5.36275 5.37433 5.46953 5.55023 5.57399 5.60206 5.70483 5.80187 5.96431 5.97721 6.14177 6.22446 6.29849 6.42576 6.44585 6.49270 6.59772 6.68402 6.72043 6.82895 7.04370 7.19693 7.24529 7.30703 7.47458 7.51742 8.16414 8.40858 8.47353 8.79411 9.02501 9.28178 10.82096 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004007 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.411025 B = 6985.549495 C = 8646.455325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.144 3.856 4 C -0.236 4.236 5 C -0.064 4.064 6 C -0.159 4.159 7 C 0.222 3.778 8 N -0.681 5.681 9 C 0.714 3.286 10 O -0.592 6.592 11 N -0.600 5.600 12 C 0.207 3.793 13 C -0.542 4.542 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.884 5.884 17 Si 0.866 3.134 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.184 3.816 22 C -0.149 4.149 23 C -0.029 4.029 24 C -0.176 4.176 25 C 0.090 3.910 26 N -0.497 5.497 27 C 0.115 3.885 28 C -0.186 4.186 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.418 0.582 36 H 0.039 0.961 37 H 0.023 0.977 38 H 0.267 0.733 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 6.534 2.793 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.098 3.902 4 C -0.256 4.256 5 C -0.083 4.083 6 C -0.180 4.180 7 C 0.125 3.875 8 N -0.328 5.328 9 C 0.416 3.584 10 O -0.472 6.472 11 N -0.333 5.333 12 C 0.086 3.914 13 C -0.581 4.581 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.520 5.520 17 Si 0.693 3.307 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.189 1.189 21 C 0.059 3.941 22 C -0.152 4.152 23 C -0.056 4.056 24 C -0.196 4.196 25 C -0.067 4.067 26 N -0.206 5.206 27 C -0.042 4.042 28 C -0.208 4.208 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.257 0.743 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.992 6.879 1.664 12.245 hybrid contribution 1.147 -0.984 1.787 2.340 sum -8.846 5.895 3.451 11.176 Atomic orbital electron populations 1.23003 0.78726 1.03575 1.01231 1.86062 1.21072 1.27123 1.88894 1.18575 0.91493 0.83994 0.96120 1.21070 0.99553 0.92365 1.12574 1.20725 0.94015 0.96736 0.96815 1.21106 0.93338 0.98378 1.05149 1.17206 0.82332 0.92788 0.95182 1.42861 1.04383 1.29313 1.56273 1.15699 0.82184 0.81114 0.79363 1.90840 1.64891 1.45647 1.45815 1.47143 1.04151 1.30411 1.51603 1.19831 0.91487 0.89025 0.91100 1.21380 1.34559 1.03591 0.98543 0.90051 1.24882 0.95200 0.95065 0.97358 1.69893 1.36430 1.09898 1.35809 0.87017 0.78912 0.78900 0.85915 1.19874 1.20849 1.18910 1.20025 0.97197 0.88607 0.88222 1.21191 0.95317 1.01490 0.97206 1.21464 0.95859 0.91709 0.96575 1.22041 1.01418 1.01980 0.94140 1.22620 0.89511 0.95316 0.99238 1.67657 1.18251 1.11321 1.23370 1.22710 0.98674 0.95421 0.87398 1.20051 0.91865 0.97457 1.11381 0.92743 0.88538 0.92811 0.85928 0.85846 0.84455 0.74292 0.94332 0.95971 0.92320 0.89462 0.89800 0.84756 0.85375 0.83641 0.82879 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.40 10.49 -19.40 -0.20 -4.60 16 3 C 0.14 2.15 6.68 -39.24 -0.26 1.89 16 4 C -0.24 -3.09 9.04 -39.40 -0.36 -3.45 16 5 C -0.06 -0.87 10.03 -39.63 -0.40 -1.27 16 6 C -0.16 -2.57 8.65 -39.37 -0.34 -2.91 16 7 C 0.22 3.87 6.27 -83.71 -0.53 3.35 16 8 N -0.68 -12.64 5.17 -14.24 -0.07 -12.71 16 9 C 0.71 14.11 8.01 -86.91 -0.70 13.41 16 10 O -0.59 -12.32 13.17 5.29 0.07 -12.25 16 11 N -0.60 -11.36 2.44 -182.18 -0.44 -11.81 16 12 C 0.21 4.17 3.99 -5.19 -0.02 4.15 16 13 C -0.54 -13.18 9.40 -34.44 -0.32 -13.51 16 14 H 0.08 2.32 7.84 -52.49 -0.41 1.90 16 15 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.88 -24.52 13.96 55.43 0.77 -23.74 16 17 Si 0.87 18.62 27.47 -169.99 -4.67 13.95 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 21 C 0.18 3.03 5.60 -5.19 -0.03 3.00 16 22 C -0.15 -2.66 5.48 -104.48 -0.57 -3.23 16 23 C -0.03 -0.52 9.11 -39.27 -0.36 -0.88 16 24 C -0.18 -2.95 10.11 -39.44 -0.40 -3.35 16 25 C 0.09 1.53 11.18 -17.55 -0.20 1.33 16 26 N -0.50 -9.44 10.36 -13.25 -0.14 -9.58 16 27 C 0.12 2.16 10.86 -17.55 -0.19 1.97 16 28 C -0.19 -3.09 9.90 -39.25 -0.39 -3.48 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.12 1.25 6.29 -52.49 -0.33 0.92 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 2.33 6.42 -52.49 -0.34 1.99 16 35 H 0.42 7.68 6.63 -40.82 -0.27 7.41 16 36 H 0.04 0.75 6.95 -51.93 -0.36 0.39 16 37 H 0.02 0.44 5.88 -51.93 -0.31 0.13 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.09 1.36 7.37 -51.93 -0.38 0.97 16 40 H 0.08 1.19 7.85 -51.93 -0.41 0.79 16 41 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 42 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.15 2.87 7.61 -52.48 -0.40 2.47 16 45 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -30.68 378.33 -8.85 -39.53 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -5.70 Total: 15.30 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -4.16 Total: 0.21 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.12 Total: -57.84 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.13 Total: -16.86 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.67 Total: 13.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.68 -8.85 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072306104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.433 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds