Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35892 * 116.99932 * 2 1 4 4 C 1.38806 * 120.02280 * 0.02562 * 3 2 1 5 5 C 1.38167 * 120.08437 * 179.97438 * 4 3 2 6 6 C 1.38169 * 120.12632 * 359.75474 * 5 4 3 7 7 C 1.38882 * 120.03584 * 0.49930 * 6 5 4 8 8 N 1.39941 * 120.04275 * 179.77018 * 7 6 5 9 9 C 1.34774 * 119.99900 * 326.54273 * 8 7 6 10 10 O 1.21590 * 120.00146 * 354.63858 * 9 8 7 11 11 N 1.34783 * 120.00137 * 174.63191 * 9 8 7 12 12 C 1.46503 * 119.99743 * 0.02562 * 11 9 8 13 13 C 1.50701 * 109.46784 * 89.99565 * 12 11 9 14 14 H 1.07993 * 120.00236 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99382 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00036 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00172 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47124 * 90.00100 * 17 15 13 19 19 H 1.48503 * 109.46877 * 209.99790 * 17 15 13 20 20 H 1.48494 * 109.47008 * 329.99944 * 17 15 13 21 21 C 1.46496 * 119.99969 * 179.97438 * 11 9 8 22 22 C 1.50702 * 109.47470 * 270.00344 * 21 11 9 23 23 C 1.38674 * 120.41860 * 269.72540 * 22 21 11 24 24 C 1.38633 * 118.41805 * 179.77844 * 23 22 21 25 25 C 1.38230 * 119.16120 * 0.51640 * 24 23 22 26 26 N 1.31850 * 120.76079 * 359.72162 * 25 24 23 27 27 C 1.31886 * 121.72908 * 0.02562 * 26 25 24 28 28 C 1.38594 * 120.01927 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47561 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47225 * 299.99646 * 1 2 3 32 32 H 1.07997 * 119.95588 * 359.95796 * 4 3 2 33 33 H 1.07997 * 119.93826 * 180.02562 * 5 4 3 34 34 H 1.07996 * 119.98244 * 180.27451 * 6 5 4 35 35 H 0.97003 * 120.00516 * 146.54010 * 8 7 6 36 36 H 1.09003 * 109.46876 * 209.99426 * 12 11 9 37 37 H 1.08996 * 109.46936 * 329.99531 * 12 11 9 38 38 H 0.96993 * 119.99875 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47183 * 30.00523 * 21 11 9 40 40 H 1.09000 * 109.47311 * 150.00698 * 21 11 9 41 41 H 1.07997 * 120.78825 * 0.02562 * 23 22 21 42 42 H 1.07999 * 120.41448 * 180.22170 * 24 23 22 43 43 H 1.07999 * 119.61643 * 179.74590 * 25 24 23 44 44 H 1.08004 * 119.61432 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.06015 * 0.04207 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2904 2.3752 0.0005 5 6 1.9163 3.6070 0.0011 6 6 3.2958 3.6838 0.0062 7 6 4.0568 2.5221 0.0003 8 7 5.4541 2.5998 0.0007 9 6 6.0728 3.6127 -0.6378 10 8 5.4241 4.4035 -1.2952 11 7 7.4106 3.7491 -0.5475 12 6 8.1923 2.7960 0.2442 13 6 8.6215 1.6478 -0.6324 14 1 8.3398 1.6296 -1.6748 15 6 9.3738 0.6205 -0.1035 16 7 9.7488 -0.3814 -0.8686 17 14 9.8616 0.6524 1.6994 18 1 8.8177 -0.0286 2.5068 19 1 11.1586 -0.0497 1.8737 20 1 9.9964 2.0606 2.1509 21 6 8.0832 4.8498 -1.2420 22 6 8.4751 4.4049 -2.6275 23 6 9.7136 3.8238 -2.8543 24 6 10.0293 3.4257 -4.1441 25 6 9.1099 3.6296 -5.1560 26 7 7.9433 4.1900 -4.9043 27 6 7.6072 4.5764 -3.6890 28 6 3.4299 1.2838 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2119 2.3183 0.0003 33 1 1.3261 4.5115 0.0019 34 1 3.7826 4.6478 0.0111 35 1 5.9773 1.9247 0.4604 36 1 9.0738 3.2950 0.6468 37 1 7.5820 2.4185 1.0646 38 1 10.2777 -1.1043 -0.4964 39 1 7.4076 5.7023 -1.3116 40 1 8.9759 5.1381 -0.6870 41 1 10.4139 3.6811 -2.0446 42 1 10.9834 2.9664 -4.3565 43 1 9.3499 3.3260 -6.1643 44 1 6.6422 5.0316 -3.5213 45 1 4.0194 0.3789 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072306104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -5.267920 kcal Electronic energy + Delta-G solvation = -29528.798840 eV Core-core repulsion = 25511.658062 eV Total energy + Delta-G solvation = -4017.140779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.88461 -41.04832 -40.53233 -38.51749 -36.93360 -35.62751 -34.62469 -33.47197 -32.55736 -31.63607 -30.15132 -29.91883 -28.11661 -27.17466 -24.68372 -24.31593 -23.70491 -23.57873 -22.57279 -20.84727 -19.49815 -19.07814 -18.84103 -17.94747 -17.42034 -17.15788 -17.07067 -16.96929 -16.59779 -16.56660 -16.14368 -16.00288 -15.50172 -15.09499 -14.73510 -14.56946 -14.49292 -14.36660 -14.15397 -13.92163 -13.77975 -13.61746 -13.40820 -13.12752 -12.85597 -12.70276 -12.58390 -12.43656 -12.14872 -12.00258 -11.86392 -11.68558 -11.27289 -11.04894 -10.78249 -10.58464 -10.40090 -9.92192 -9.60636 -9.36119 -8.90473 -8.25083 -6.32316 0.19813 0.30797 0.45942 0.49712 1.40503 1.43327 1.50556 1.67200 2.13962 2.35368 2.42138 2.87115 2.88772 3.08266 3.11119 3.60226 3.88494 3.94617 3.98400 4.14394 4.16125 4.21294 4.26920 4.34950 4.44601 4.45176 4.51991 4.56686 4.62825 4.66352 4.72234 4.79256 4.81498 4.84242 4.92281 5.25685 5.29724 5.30376 5.37082 5.43521 5.44940 5.55132 5.60978 5.86785 5.95184 6.00959 6.26775 6.47848 6.73566 6.87718 7.06885 7.31963 7.52585 8.90323 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004007 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.411025 B = 6985.549495 C = 8646.455325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.141 3.859 4 C -0.224 4.224 5 C -0.056 4.056 6 C -0.173 4.173 7 C 0.197 3.803 8 N -0.683 5.683 9 C 0.708 3.292 10 O -0.607 6.607 11 N -0.601 5.601 12 C 0.212 3.788 13 C -0.526 4.526 14 H 0.031 0.969 15 C 0.025 3.975 16 N -0.938 5.938 17 Si 0.932 3.068 18 H -0.270 1.270 19 H -0.291 1.291 20 H -0.234 1.234 21 C 0.180 3.820 22 C -0.152 4.152 23 C -0.042 4.042 24 C -0.180 4.180 25 C 0.083 3.917 26 N -0.519 5.519 27 C 0.099 3.901 28 C -0.207 4.207 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.126 0.874 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.177 0.823 44 H 0.147 0.853 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 7.500 4.331 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.095 3.905 4 C -0.243 4.243 5 C -0.075 4.075 6 C -0.194 4.194 7 C 0.101 3.899 8 N -0.330 5.330 9 C 0.410 3.590 10 O -0.488 6.488 11 N -0.333 5.333 12 C 0.090 3.910 13 C -0.565 4.565 14 H 0.049 0.951 15 C -0.174 4.174 16 N -0.577 5.577 17 Si 0.756 3.244 18 H -0.195 1.195 19 H -0.217 1.217 20 H -0.157 1.157 21 C 0.057 3.943 22 C -0.156 4.156 23 C -0.069 4.069 24 C -0.199 4.199 25 C -0.073 4.073 26 N -0.228 5.228 27 C -0.058 4.058 28 C -0.229 4.229 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.144 0.856 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.194 0.806 44 H 0.164 0.836 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.308 7.875 3.209 14.149 hybrid contribution 1.390 -1.347 1.191 2.272 sum -9.918 6.529 4.400 12.663 Atomic orbital electron populations 1.23378 0.76067 1.05558 1.02605 1.86045 1.23847 1.26740 1.88625 1.18701 0.91068 0.85254 0.95510 1.21447 1.01265 0.91228 1.10370 1.21110 0.93052 0.98393 0.94908 1.21141 0.94635 0.97333 1.06283 1.17428 0.81854 0.93655 0.96946 1.42854 1.05118 1.28850 1.56178 1.15883 0.82473 0.81282 0.79371 1.90816 1.65211 1.46303 1.46455 1.47172 1.03870 1.30617 1.51669 1.19722 0.92482 0.88073 0.90705 1.21374 1.33510 1.04880 0.96689 0.95116 1.25679 0.95272 0.94476 1.01972 1.70062 1.38274 1.11173 1.38237 0.85952 0.77930 0.80441 0.80091 1.19540 1.21680 1.15656 1.20264 0.98350 0.88028 0.87680 1.21308 0.95236 1.01371 0.97652 1.21655 0.95999 0.91959 0.97266 1.22370 1.02357 1.01353 0.93832 1.23140 0.88817 0.94584 1.00800 1.67642 1.19387 1.12117 1.23631 1.22714 0.98814 0.96275 0.87966 1.20081 0.93108 0.96769 1.12936 0.91568 0.86518 0.91049 0.82283 0.82475 0.85584 0.74668 0.92229 0.94600 0.92581 0.88614 0.87038 0.84347 0.83136 0.80618 0.83569 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.92 10.49 -92.34 -0.97 -9.89 16 3 C 0.14 4.07 6.68 22.49 0.15 4.22 16 4 C -0.22 -5.24 9.04 22.39 0.20 -5.04 16 5 C -0.06 -1.39 10.03 22.24 0.22 -1.17 16 6 C -0.17 -5.55 8.65 22.41 0.19 -5.35 16 7 C 0.20 7.02 6.27 38.13 0.24 7.26 16 8 N -0.68 -25.99 5.17 -317.22 -1.64 -27.64 16 9 C 0.71 28.37 8.01 179.05 1.43 29.81 16 10 O -0.61 -25.73 13.17 -4.00 -0.05 -25.78 16 11 N -0.60 -22.59 2.44 -848.56 -2.07 -24.66 16 12 C 0.21 8.33 3.99 85.63 0.34 8.67 16 13 C -0.53 -25.89 9.40 25.60 0.24 -25.65 16 14 H 0.03 1.81 7.84 -2.91 -0.02 1.79 16 15 C 0.03 1.29 5.47 84.65 0.46 1.75 16 16 N -0.94 -53.55 13.96 21.45 0.30 -53.25 16 17 Si 0.93 37.75 27.47 68.60 1.88 39.63 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16 21 C 0.18 5.84 5.60 85.63 0.48 6.31 16 22 C -0.15 -5.50 5.48 -19.77 -0.11 -5.60 16 23 C -0.04 -1.49 9.11 22.47 0.20 -1.29 16 24 C -0.18 -5.96 10.11 22.36 0.23 -5.74 16 25 C 0.08 2.80 11.18 84.69 0.95 3.75 16 26 N -0.52 -19.99 10.36 -195.84 -2.03 -22.02 16 27 C 0.10 3.82 10.86 84.67 0.92 4.74 16 28 C -0.21 -7.06 9.90 22.49 0.22 -6.83 16 29 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.16 2.52 6.29 -2.91 -0.02 2.50 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.13 4.29 6.42 -2.91 -0.02 4.27 16 35 H 0.41 15.68 6.63 -92.71 -0.61 15.07 16 36 H 0.06 2.14 6.95 -2.39 -0.02 2.13 16 37 H 0.04 1.35 5.88 -2.39 -0.01 1.33 16 38 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.10 2.93 7.37 -2.39 -0.02 2.91 16 40 H 0.11 2.95 7.85 -2.39 -0.02 2.93 16 41 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.18 4.64 8.06 -2.91 -0.02 4.61 16 44 H 0.15 5.70 7.61 -2.91 -0.02 5.68 16 45 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -69.15 378.33 3.27 -65.88 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: 0.36 Total: 46.51 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 7.49 Total: 11.21 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -5.44 Total: -127.57 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.02 Total: -35.67 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.88 Total: 39.63 kcal Total: -69.15 3.27 -65.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072306104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.608 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds