Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47214 * 240.00043 * 3 2 1 5 5 H 1.48507 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47207 * 119.99783 * 3 2 1 7 7 C 1.39895 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00202 * 187.49759 * 7 2 1 9 9 C 1.41161 * 119.99832 * 7.50701 * 7 2 1 10 10 C 1.40864 * 120.16461 * 31.92290 * 9 7 2 11 11 C 1.36372 * 119.83228 * 179.72418 * 10 9 7 12 12 C 1.39485 * 120.16176 * 0.23583 * 11 10 9 13 13 N 1.39246 * 119.83072 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00139 * 36.82007 * 13 12 11 15 15 O 1.21579 * 119.99754 * 355.29475 * 14 13 12 16 16 N 1.34776 * 120.00031 * 175.29857 * 14 13 12 17 17 C 1.46926 * 120.63076 * 5.10878 * 16 14 13 18 18 C 1.53625 * 108.54313 * 126.37044 * 17 16 14 19 19 C 1.53038 * 109.24073 * 54.85728 * 18 17 16 20 20 C 1.50701 * 109.46183 * 178.49074 * 19 18 17 21 21 N 1.30498 * 125.65058 * 215.09346 * 20 19 18 22 22 C 1.34127 * 109.25404 * 180.02562 * 21 20 19 23 23 C 1.34667 * 108.02277 * 359.97438 * 22 21 20 24 24 N 1.35042 * 125.64756 * 34.79155 * 20 19 18 25 25 H 0.96999 * 126.39696 * 359.97438 * 24 20 19 26 26 C 1.53043 * 109.53721 * 298.51246 * 19 18 17 27 27 C 1.46920 * 120.62923 * 185.39532 * 16 14 13 28 28 C 1.39478 * 120.33790 * 0.02562 * 12 11 10 29 29 C 1.36375 * 120.16747 * 359.97438 * 28 12 11 30 30 H 0.97003 * 120.00019 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.08754 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.91926 * 180.25345 * 11 10 9 33 33 H 0.96995 * 119.99918 * 216.81767 * 13 12 11 34 34 H 1.08997 * 109.58679 * 246.20416 * 17 16 14 35 35 H 1.09007 * 109.58430 * 6.63081 * 17 16 14 36 36 H 1.09006 * 109.63237 * 294.86721 * 18 17 16 37 37 H 1.09001 * 109.45970 * 174.74193 * 18 17 16 38 38 H 1.09003 * 109.46088 * 58.53114 * 19 18 17 39 39 H 1.08000 * 125.98755 * 180.02562 * 22 21 20 40 40 H 1.07998 * 126.59403 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.49938 * 301.41148 * 26 19 18 42 42 H 1.09002 * 109.52112 * 181.33267 * 26 19 18 43 43 H 1.09001 * 109.58962 * 353.36665 * 27 16 14 44 44 H 1.08997 * 109.58894 * 113.79887 * 27 16 14 45 45 H 1.07996 * 119.91699 * 179.97438 * 28 12 11 46 46 H 1.07997 * 120.08531 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2126 7 6 2.0082 -1.2115 0.0005 8 1 3.0813 -1.2155 0.1226 9 6 1.3115 -2.4288 -0.1586 10 6 0.1436 -2.4784 -0.9447 11 6 -0.5210 -3.6592 -1.0985 12 6 -0.0498 -4.8149 -0.4757 13 7 -0.7342 -6.0168 -0.6370 14 6 -1.3044 -6.3140 -1.8215 15 8 -1.2956 -5.4974 -2.7222 16 7 -1.8846 -7.5162 -2.0074 17 6 -2.0025 -8.4703 -0.8963 18 6 -3.4741 -8.8921 -0.7686 19 6 -3.9627 -9.4320 -2.1147 20 6 -5.3952 -9.8817 -1.9853 21 7 -5.9311 -10.9001 -2.6005 22 6 -7.2212 -11.0012 -2.2475 23 6 -7.4948 -10.0081 -1.3802 24 7 -6.3353 -9.3010 -1.2091 25 1 -6.2125 -8.5262 -0.6386 26 6 -3.8677 -8.3303 -3.1729 27 6 -2.4055 -7.9000 -3.3264 28 6 1.1028 -4.7726 0.3086 29 6 1.7781 -3.5991 0.4716 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2218 -1.5845 -1.4284 32 1 -1.4143 -3.6997 -1.7042 33 1 -0.8004 -6.6403 0.1031 34 1 -1.3850 -9.3453 -1.0990 35 1 -1.6752 -7.9960 0.0290 36 1 -4.0781 -8.0315 -0.4809 37 1 -3.5645 -9.6699 -0.0103 38 1 -3.3425 -10.2771 -2.4137 39 1 -7.9180 -11.7487 -2.5969 40 1 -8.4454 -9.8098 -0.9075 41 1 -4.4680 -7.4751 -2.8625 42 1 -4.2379 -8.7080 -4.1260 43 1 -2.3444 -7.0493 -4.0051 44 1 -1.8203 -8.7295 -3.7232 45 1 1.4614 -5.6715 0.7880 46 1 2.6706 -3.5679 1.0789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072309822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = 56.972689 kcal Electronic energy + Delta-G solvation = -28447.849893 eV Core-core repulsion = 24531.126732 eV Total energy + Delta-G solvation = -3916.723161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.40563 -40.37269 -38.22044 -36.97166 -34.52676 -33.70142 -32.87737 -32.67979 -31.25062 -29.56408 -29.36982 -28.67837 -25.77499 -24.64098 -23.58315 -22.35341 -21.50895 -21.20050 -20.86140 -20.37706 -19.16363 -18.55086 -17.80256 -17.26631 -16.47187 -15.49156 -15.46560 -15.28767 -14.95887 -14.79435 -14.51244 -14.33850 -13.97344 -13.93837 -13.80654 -13.52574 -13.27116 -12.86931 -12.68311 -12.58891 -12.06492 -11.74437 -11.70343 -11.62984 -11.36486 -11.13452 -11.07724 -11.00253 -10.98261 -10.67461 -10.33624 -10.31077 -9.94066 -9.70257 -9.40454 -9.18052 -8.87183 -8.70831 -8.61335 -7.50425 -6.89174 -6.63513 -4.29864 1.74473 2.66306 2.80935 2.84310 2.87373 3.07562 3.09963 3.12899 3.17567 3.62242 3.93626 3.98466 4.12086 4.35208 4.51312 4.71120 4.72116 4.75597 4.89365 4.95786 5.09812 5.14651 5.25974 5.29332 5.42842 5.48257 5.58531 5.67491 5.69067 5.78755 5.83059 5.98543 6.14770 6.39142 6.43313 6.47187 6.81720 6.86991 7.03064 7.06752 7.13507 7.28875 7.33432 7.65084 7.79762 7.81241 8.01394 8.09640 8.29297 8.42044 8.67235 8.93309 8.93483 9.09496 10.29869 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.002009 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.391461 B =13934.977934 C =14260.396842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.104 3.896 10 C -0.144 4.144 11 C -0.089 4.089 12 C 0.019 3.981 13 N -0.667 5.667 14 C 0.699 3.301 15 O -0.573 6.573 16 N -0.636 5.636 17 C 0.116 3.884 18 C -0.133 4.133 19 C -0.001 4.001 20 C 0.220 3.780 21 N -0.490 5.490 22 C -0.029 4.029 23 C -0.059 4.059 24 N -0.564 5.564 25 H 0.419 0.581 26 C -0.125 4.125 27 C 0.132 3.868 28 C -0.112 4.112 29 C -0.207 4.207 30 H 0.279 0.721 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.389 0.611 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -18.303 -0.006 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.101 3.899 10 C -0.164 4.164 11 C -0.110 4.110 12 C -0.074 4.074 13 N -0.315 5.315 14 C 0.402 3.598 15 O -0.449 6.449 16 N -0.376 5.376 17 C -0.008 4.008 18 C -0.172 4.172 19 C -0.021 4.021 20 C -0.045 4.045 21 N -0.210 5.210 22 C -0.178 4.178 23 C -0.193 4.193 24 N -0.167 5.167 25 H 0.257 0.743 26 C -0.164 4.164 27 C 0.009 3.991 28 C -0.132 4.132 29 C -0.227 4.227 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.224 0.776 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.186 0.814 40 H 0.193 0.807 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.730 -18.102 -1.242 21.606 hybrid contribution -0.391 1.211 1.437 1.919 sum -12.120 -16.891 0.195 20.791 Atomic orbital electron populations 1.69797 1.07323 1.28979 1.37155 1.25873 0.94875 1.01109 0.92585 0.86314 0.79909 0.80310 0.79782 1.18972 1.20446 1.19151 1.19458 0.95147 0.90344 1.44403 0.90628 1.17683 0.91863 0.92111 0.88235 1.21043 0.98371 0.96214 1.00748 1.20567 0.99540 0.91414 0.99445 1.17034 0.96451 0.83899 1.10024 1.42281 1.56570 1.21170 1.11505 1.15923 0.78998 0.81558 0.83363 1.90913 1.63942 1.47323 1.42762 1.47311 1.63865 1.15515 1.10897 1.21617 0.95483 0.93432 0.90312 1.22106 0.97228 1.01225 0.96682 1.19644 0.87006 0.99176 0.96318 1.23225 0.93630 0.93211 0.94394 1.70252 1.08402 1.17582 1.24723 1.22356 0.93627 1.00919 1.00851 1.22778 0.91627 0.98225 1.06694 1.43294 1.09814 1.26893 1.36715 0.74306 1.22003 0.97730 0.97543 0.99121 1.21399 0.92118 1.01257 0.84364 1.20032 0.94263 0.97238 1.01668 1.20610 1.02671 0.93607 1.05859 0.91020 0.86155 0.87610 0.77563 0.90861 0.89994 0.91481 0.90202 0.87673 0.81377 0.80713 0.91486 0.89950 0.88253 0.91497 0.89265 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.25 10.88 55.54 0.60 -20.64 16 2 C 0.07 1.82 5.29 -17.34 -0.09 1.73 16 3 Si 0.91 19.04 29.57 -169.99 -5.03 14.01 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.37 9.04 -37.85 -0.34 -12.71 16 8 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 9 C 0.10 2.79 5.53 -106.80 -0.59 2.19 16 10 C -0.14 -3.87 8.58 -39.26 -0.34 -4.20 16 11 C -0.09 -2.23 8.60 -39.79 -0.34 -2.58 16 12 C 0.02 0.41 6.28 -83.57 -0.52 -0.12 16 13 N -0.67 -11.63 5.21 -14.10 -0.07 -11.71 16 14 C 0.70 12.30 8.13 -86.92 -0.71 11.59 16 15 O -0.57 -12.64 13.26 5.30 0.07 -12.57 16 16 N -0.64 -7.86 2.97 -178.23 -0.53 -8.38 16 17 C 0.12 0.97 6.42 -3.49 -0.02 0.95 16 18 C -0.13 -0.93 5.09 -26.39 -0.13 -1.06 16 19 C 0.00 -0.01 2.62 -91.73 -0.24 -0.25 16 20 C 0.22 2.07 6.87 -155.42 -1.07 1.00 16 21 N -0.49 -5.59 11.25 -10.82 -0.12 -5.72 16 22 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 23 C -0.06 -0.43 12.04 -16.56 -0.20 -0.63 16 24 N -0.56 -4.25 5.91 -10.23 -0.06 -4.31 16 25 H 0.42 2.27 8.19 -40.82 -0.33 1.93 16 26 C -0.12 -1.13 5.34 -26.61 -0.14 -1.27 16 27 C 0.13 1.44 6.44 -3.71 -0.02 1.41 16 28 C -0.11 -2.42 9.90 -39.79 -0.39 -2.82 16 29 C -0.21 -5.00 9.74 -39.26 -0.38 -5.39 16 30 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 31 H 0.12 3.38 6.34 -52.49 -0.33 3.05 16 32 H 0.11 2.68 6.32 -52.49 -0.33 2.34 16 33 H 0.39 5.28 6.31 -40.82 -0.26 5.02 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.64 5.65 -51.92 -0.29 0.35 16 36 H 0.07 0.48 7.49 -51.93 -0.39 0.09 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.31 7.00 -51.93 -0.36 0.95 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -33.49 372.66 -11.35 -44.84 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.08 Total: 11.49 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -5.75 Total: -12.63 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.18 Total: -50.76 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.49 -11.35 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072309822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.813 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds