Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47214 * 240.00043 * 3 2 1 5 5 H 1.48507 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47207 * 119.99783 * 3 2 1 7 7 C 1.39895 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00202 * 187.49759 * 7 2 1 9 9 C 1.41161 * 119.99832 * 7.50701 * 7 2 1 10 10 C 1.40864 * 120.16461 * 31.92290 * 9 7 2 11 11 C 1.36372 * 119.83228 * 179.72418 * 10 9 7 12 12 C 1.39485 * 120.16176 * 0.23583 * 11 10 9 13 13 N 1.39246 * 119.83072 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00139 * 36.82007 * 13 12 11 15 15 O 1.21579 * 119.99754 * 355.29475 * 14 13 12 16 16 N 1.34776 * 120.00031 * 175.29857 * 14 13 12 17 17 C 1.46926 * 120.63076 * 5.10878 * 16 14 13 18 18 C 1.53625 * 108.54313 * 126.37044 * 17 16 14 19 19 C 1.53038 * 109.24073 * 54.85728 * 18 17 16 20 20 C 1.50701 * 109.46183 * 178.49074 * 19 18 17 21 21 N 1.30498 * 125.65058 * 215.09346 * 20 19 18 22 22 C 1.34127 * 109.25404 * 180.02562 * 21 20 19 23 23 C 1.34667 * 108.02277 * 359.97438 * 22 21 20 24 24 N 1.35042 * 125.64756 * 34.79155 * 20 19 18 25 25 H 0.96999 * 126.39696 * 359.97438 * 24 20 19 26 26 C 1.53043 * 109.53721 * 298.51246 * 19 18 17 27 27 C 1.46920 * 120.62923 * 185.39532 * 16 14 13 28 28 C 1.39478 * 120.33790 * 0.02562 * 12 11 10 29 29 C 1.36375 * 120.16747 * 359.97438 * 28 12 11 30 30 H 0.97003 * 120.00019 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.08754 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.91926 * 180.25345 * 11 10 9 33 33 H 0.96995 * 119.99918 * 216.81767 * 13 12 11 34 34 H 1.08997 * 109.58679 * 246.20416 * 17 16 14 35 35 H 1.09007 * 109.58430 * 6.63081 * 17 16 14 36 36 H 1.09006 * 109.63237 * 294.86721 * 18 17 16 37 37 H 1.09001 * 109.45970 * 174.74193 * 18 17 16 38 38 H 1.09003 * 109.46088 * 58.53114 * 19 18 17 39 39 H 1.08000 * 125.98755 * 180.02562 * 22 21 20 40 40 H 1.07998 * 126.59403 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.49938 * 301.41148 * 26 19 18 42 42 H 1.09002 * 109.52112 * 181.33267 * 26 19 18 43 43 H 1.09001 * 109.58962 * 353.36665 * 27 16 14 44 44 H 1.08997 * 109.58894 * 113.79887 * 27 16 14 45 45 H 1.07996 * 119.91699 * 179.97438 * 28 12 11 46 46 H 1.07997 * 120.08531 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2126 7 6 2.0082 -1.2115 0.0005 8 1 3.0813 -1.2155 0.1226 9 6 1.3115 -2.4288 -0.1586 10 6 0.1436 -2.4784 -0.9447 11 6 -0.5210 -3.6592 -1.0985 12 6 -0.0498 -4.8149 -0.4757 13 7 -0.7342 -6.0168 -0.6370 14 6 -1.3044 -6.3140 -1.8215 15 8 -1.2956 -5.4974 -2.7222 16 7 -1.8846 -7.5162 -2.0074 17 6 -2.0025 -8.4703 -0.8963 18 6 -3.4741 -8.8921 -0.7686 19 6 -3.9627 -9.4320 -2.1147 20 6 -5.3952 -9.8817 -1.9853 21 7 -5.9311 -10.9001 -2.6005 22 6 -7.2212 -11.0012 -2.2475 23 6 -7.4948 -10.0081 -1.3802 24 7 -6.3353 -9.3010 -1.2091 25 1 -6.2125 -8.5262 -0.6386 26 6 -3.8677 -8.3303 -3.1729 27 6 -2.4055 -7.9000 -3.3264 28 6 1.1028 -4.7726 0.3086 29 6 1.7781 -3.5991 0.4716 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2218 -1.5845 -1.4284 32 1 -1.4143 -3.6997 -1.7042 33 1 -0.8004 -6.6403 0.1031 34 1 -1.3850 -9.3453 -1.0990 35 1 -1.6752 -7.9960 0.0290 36 1 -4.0781 -8.0315 -0.4809 37 1 -3.5645 -9.6699 -0.0103 38 1 -3.3425 -10.2771 -2.4137 39 1 -7.9180 -11.7487 -2.5969 40 1 -8.4454 -9.8098 -0.9075 41 1 -4.4680 -7.4751 -2.8625 42 1 -4.2379 -8.7080 -4.1260 43 1 -2.3444 -7.0493 -4.0051 44 1 -1.8203 -8.7295 -3.7232 45 1 1.4614 -5.6715 0.7880 46 1 2.6706 -3.5679 1.0789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072309822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = 36.752011 kcal Electronic energy + Delta-G solvation = -28448.726727 eV Core-core repulsion = 24531.126732 eV Total energy + Delta-G solvation = -3917.599996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.03675 -41.66247 -39.62191 -38.39003 -36.20787 -34.99230 -34.23388 -33.41074 -32.10008 -31.40126 -30.75899 -29.86283 -27.09495 -25.98581 -24.39829 -23.42901 -23.05823 -22.49653 -21.86255 -21.30846 -20.39445 -19.55561 -19.19003 -18.66642 -17.93706 -17.10808 -16.65511 -16.33275 -15.97066 -15.71928 -15.59108 -15.44807 -15.08897 -15.01191 -14.77548 -14.48768 -14.39723 -14.31847 -13.96755 -13.89257 -13.62572 -13.39134 -13.18641 -12.85514 -12.77032 -12.51785 -12.38551 -12.29964 -11.81176 -11.75020 -11.63009 -11.51686 -11.16742 -11.01959 -10.98163 -10.95303 -10.61894 -9.69800 -9.42424 -9.32313 -8.72508 -8.50928 -6.27884 0.88780 1.14009 1.16300 1.39296 1.49682 1.51306 1.67783 2.16631 2.18804 2.24546 2.27584 2.82420 3.01234 3.28429 3.63986 3.73621 3.82689 4.02578 4.16539 4.26143 4.28250 4.38687 4.45654 4.50727 4.52739 4.61279 4.66796 4.76424 4.84683 4.86803 4.89218 5.00286 5.02531 5.13211 5.18479 5.19361 5.28080 5.33603 5.44951 5.57880 5.68905 5.81263 5.83712 6.07475 6.14533 6.16130 6.39029 6.49207 6.72310 6.97519 7.03662 7.04838 7.16036 7.66036 8.43031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.002009 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.391461 B =13934.977934 C =14260.396842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.069 3.931 10 C -0.168 4.168 11 C -0.104 4.104 12 C 0.036 3.964 13 N -0.658 5.658 14 C 0.694 3.306 15 O -0.625 6.625 16 N -0.624 5.624 17 C 0.109 3.891 18 C -0.124 4.124 19 C 0.007 3.993 20 C 0.207 3.793 21 N -0.526 5.526 22 C -0.060 4.060 23 C -0.046 4.046 24 N -0.559 5.559 25 H 0.429 0.571 26 C -0.113 4.113 27 C 0.130 3.870 28 C -0.105 4.105 29 C -0.213 4.213 30 H 0.283 0.717 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.412 0.588 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.182 0.818 40 H 0.208 0.792 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.136 0.864 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -20.487 1.680 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.067 3.933 10 C -0.188 4.188 11 C -0.124 4.124 12 C -0.058 4.058 13 N -0.308 5.308 14 C 0.397 3.603 15 O -0.505 6.505 16 N -0.362 5.362 17 C -0.014 4.014 18 C -0.163 4.163 19 C -0.014 4.014 20 C -0.058 4.058 21 N -0.247 5.247 22 C -0.207 4.207 23 C -0.181 4.181 24 N -0.163 5.163 25 H 0.269 0.731 26 C -0.152 4.152 27 C 0.007 3.993 28 C -0.125 4.125 29 C -0.232 4.232 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.199 0.801 40 H 0.225 0.775 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.154 0.846 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.806 -20.372 0.480 23.551 hybrid contribution -0.515 1.651 0.865 1.934 sum -12.321 -18.721 1.346 22.452 Atomic orbital electron populations 1.69894 1.08872 1.30055 1.38093 1.26777 0.95657 1.04544 0.91644 0.85200 0.78529 0.75616 0.79993 1.18711 1.19636 1.18066 1.19734 0.95453 0.91372 1.46317 0.90340 1.18018 0.92381 0.93649 0.89302 1.20903 0.99653 0.96124 1.02120 1.20568 0.99376 0.92254 1.00206 1.17068 0.96247 0.84553 1.07904 1.42036 1.56144 1.20062 1.12588 1.16132 0.79015 0.82564 0.82625 1.90892 1.65785 1.49511 1.44355 1.47319 1.62015 1.14252 1.12565 1.21979 0.97050 0.93235 0.89089 1.22053 0.95938 1.01774 0.96551 1.19584 0.86740 0.98664 0.96388 1.23321 0.94223 0.93321 0.94891 1.70192 1.09700 1.18868 1.25906 1.22756 0.93452 1.02402 1.02095 1.23299 0.92453 0.96928 1.05385 1.43331 1.09601 1.27009 1.36376 0.73108 1.21858 0.95982 0.97532 0.99837 1.21499 0.93687 1.00768 0.83297 1.20393 0.93203 0.98118 1.00781 1.20887 1.03305 0.93581 1.05474 0.90623 0.88798 0.88874 0.74871 0.88369 0.88992 0.91603 0.87960 0.87144 0.80124 0.77513 0.92755 0.89825 0.91162 0.89226 0.84617 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.29 10.88 21.82 0.24 -46.05 16 2 C 0.03 1.36 5.29 85.24 0.45 1.81 16 3 Si 0.99 39.71 29.57 68.60 2.03 41.73 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.50 -27.45 9.04 23.39 0.21 -27.24 16 8 H 0.08 4.10 7.86 -2.91 -0.02 4.07 16 9 C 0.07 3.82 5.53 -21.27 -0.12 3.70 16 10 C -0.17 -9.51 8.58 22.48 0.19 -9.31 16 11 C -0.10 -5.36 8.60 22.13 0.19 -5.17 16 12 C 0.04 1.58 6.28 38.56 0.24 1.82 16 13 N -0.66 -21.66 5.21 -316.78 -1.65 -23.31 16 14 C 0.69 23.87 8.13 179.05 1.45 25.33 16 15 O -0.63 -28.32 13.26 -3.96 -0.05 -28.37 16 16 N -0.62 -14.26 2.97 -836.08 -2.48 -16.74 16 17 C 0.11 1.43 6.42 86.51 0.56 1.98 16 18 C -0.12 -1.32 5.09 30.82 0.16 -1.16 16 19 C 0.01 0.09 2.62 -11.51 -0.03 0.06 16 20 C 0.21 3.51 6.87 138.13 0.95 4.46 16 21 N -0.53 -11.35 11.25 -188.13 -2.12 -13.47 16 22 C -0.06 -1.02 11.87 83.52 0.99 -0.03 16 23 C -0.05 -0.57 12.04 83.09 1.00 0.43 16 24 N -0.56 -7.14 5.91 -186.27 -1.10 -8.24 16 25 H 0.43 3.57 8.19 -92.71 -0.76 2.81 16 26 C -0.11 -1.92 5.34 30.67 0.16 -1.76 16 27 C 0.13 2.71 6.44 86.36 0.56 3.27 16 28 C -0.10 -4.32 9.90 22.13 0.22 -4.10 16 29 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 30 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 31 H 0.09 5.69 6.34 -2.91 -0.02 5.67 16 32 H 0.09 4.98 6.32 -2.91 -0.02 4.96 16 33 H 0.41 9.71 6.31 -92.71 -0.58 9.13 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.05 5.65 -2.38 -0.01 1.04 16 36 H 0.07 0.75 7.49 -2.38 -0.02 0.73 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.91 7.00 -2.39 -0.02 1.90 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 46 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -77.60 372.66 1.96 -75.64 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.31 Total: 34.61 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 7.41 Total: -15.82 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -7.11 Total: -107.80 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -77.60 1.96 -75.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072309822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.392 kcal (2) G-P(sol) polarization free energy of solvation -77.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds