Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47262 * 270.00038 * 3 2 1 5 5 H 1.48504 * 109.46917 * 30.00106 * 3 2 1 6 6 H 1.48503 * 109.47439 * 150.00004 * 3 2 1 7 7 C 1.37881 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99433 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00665 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47530 * 174.90371 * 9 7 2 11 11 C 1.46903 * 110.99758 * 295.77062 * 10 9 7 12 12 C 1.50689 * 109.47174 * 293.95410 * 11 10 9 13 13 N 1.30355 * 126.16237 * 90.04586 * 12 11 10 14 14 N 1.28661 * 109.58359 * 179.68953 * 13 12 11 15 15 C 1.31540 * 109.21948 * 0.44358 * 14 13 12 16 16 C 1.47030 * 126.41198 * 179.82268 * 15 14 13 17 17 C 1.36304 * 125.96608 * 359.69361 * 16 15 14 18 18 C 1.40723 * 106.72312 * 179.97438 * 17 16 15 19 19 C 1.34857 * 107.07934 * 359.97438 * 18 17 16 20 20 O 1.34230 * 108.73135 * 0.02562 * 19 18 17 21 21 O 1.34519 * 126.15826 * 269.99871 * 12 11 10 22 22 C 1.46901 * 110.99841 * 59.72492 * 10 9 7 23 23 C 1.50693 * 109.47006 * 71.24893 * 22 10 9 24 24 C 1.38679 * 120.41944 * 263.91259 * 23 22 10 25 25 C 1.38626 * 118.42255 * 179.78432 * 24 23 22 26 26 C 1.38228 * 119.15880 * 0.51696 * 25 24 23 27 27 N 1.31858 * 120.76668 * 359.72008 * 26 25 24 28 28 C 1.31888 * 121.71969 * 0.02562 * 27 26 25 29 29 H 0.96996 * 119.99938 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46969 * 54.90279 * 9 7 2 31 31 H 1.09005 * 109.47017 * 294.90930 * 9 7 2 32 32 H 1.08998 * 109.46700 * 173.94710 * 11 10 9 33 33 H 1.09003 * 109.46973 * 53.95769 * 11 10 9 34 34 H 1.08005 * 126.63565 * 359.73719 * 17 16 15 35 35 H 1.07997 * 126.45937 * 179.97438 * 18 17 16 36 36 H 1.07999 * 125.63383 * 180.02562 * 19 18 17 37 37 H 1.08994 * 109.46912 * 191.24957 * 22 10 9 38 38 H 1.09003 * 109.47089 * 311.24786 * 22 10 9 39 39 H 1.08002 * 120.78993 * 0.02562 * 24 23 22 40 40 H 1.08002 * 120.42321 * 180.21969 * 25 24 23 41 41 H 1.07997 * 119.62094 * 179.75305 * 26 25 24 42 42 H 1.08001 * 119.61382 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5737 0.1223 11 6 3.6140 -3.1571 1.4137 12 6 4.3194 -2.4263 2.5268 13 7 3.8758 -1.3771 3.1605 14 7 4.7305 -1.0188 4.0529 15 6 5.7647 -1.8306 4.0125 16 6 6.9607 -1.7635 4.8652 17 6 7.1985 -0.8403 5.8394 18 6 8.4527 -1.1528 6.3959 19 6 8.9157 -2.2387 5.7440 20 8 8.0129 -2.6047 4.8206 21 8 5.5201 -2.7397 3.0462 22 6 3.5252 -3.4020 -0.9936 23 6 4.2383 -2.9987 -2.2583 24 6 3.6524 -2.1022 -3.1394 25 6 4.3470 -1.7565 -4.2882 26 6 5.5871 -2.3212 -4.5210 27 7 6.1116 -3.1743 -3.6632 28 6 5.4815 -3.5221 -2.5580 29 1 -0.4850 0.8400 0.0004 30 1 3.8745 -0.6038 0.8414 31 1 3.8752 -0.7606 -0.9316 32 1 3.8945 -4.2102 1.4353 33 1 2.5358 -3.0657 1.5451 34 1 6.5514 -0.0244 6.1259 35 1 8.9505 -0.6229 7.1944 36 1 9.8574 -2.7324 5.9336 37 1 3.7295 -4.4512 -0.7801 38 1 2.4520 -3.2592 -1.1201 39 1 2.6797 -1.6804 -2.9335 40 1 3.9226 -1.0586 -4.9947 41 1 6.1330 -2.0602 -5.4156 42 1 5.9431 -4.2236 -1.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072314833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = 115.588949 kcal Electronic energy + Delta-G solvation = -28654.059171 eV Core-core repulsion = 24604.044707 eV Total energy + Delta-G solvation = -4050.014464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.90848 -42.81184 -39.87521 -37.33695 -35.94401 -33.55272 -32.85298 -32.61067 -31.90080 -31.27172 -29.49137 -28.06074 -26.75544 -24.51283 -24.05744 -23.18085 -22.80057 -21.96674 -21.44298 -21.14972 -19.93866 -18.54805 -17.37175 -17.18876 -16.68670 -16.56390 -16.21462 -15.96964 -15.61309 -15.20798 -14.97087 -14.35870 -14.26065 -14.03391 -13.40614 -13.31454 -13.20615 -12.97356 -12.86171 -12.61831 -12.51620 -12.19383 -12.07438 -11.77665 -11.52023 -11.35382 -11.08297 -10.96620 -10.73582 -10.50957 -10.44851 -10.09644 -9.93904 -9.66500 -9.40591 -9.16053 -8.69851 -8.64330 -8.42333 -7.61208 -6.17514 -4.18648 0.56230 1.40852 1.64232 1.80497 2.05217 2.29448 2.58960 2.82055 3.25829 3.35630 3.43270 3.99184 4.14094 4.37652 4.53044 4.63416 4.70802 4.76201 4.89810 5.02521 5.12205 5.17336 5.24539 5.34279 5.36342 5.46456 5.47343 5.51520 5.63928 5.64673 5.68500 5.87762 5.97934 6.02649 6.08642 6.09413 6.31793 6.51917 6.64476 6.68010 6.75692 6.96890 7.04159 7.33199 7.63173 7.70775 8.25232 8.30118 8.51453 8.78535 9.46099 10.94416 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.003759 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.612660 B = 7446.865120 C = 9276.574363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.087 3.913 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.145 3.855 10 N -0.529 5.529 11 C 0.147 3.853 12 C 0.208 3.792 13 N -0.256 5.256 14 N -0.252 5.252 15 C 0.212 3.788 16 C 0.052 3.948 17 C -0.130 4.130 18 C -0.216 4.216 19 C -0.012 4.012 20 O -0.164 6.164 21 O -0.215 6.215 22 C 0.097 3.903 23 C -0.110 4.110 24 C -0.055 4.055 25 C -0.179 4.179 26 C 0.085 3.915 27 N -0.495 5.495 28 C 0.109 3.891 29 H 0.265 0.735 30 H 0.037 0.963 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.213 0.787 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.284 -6.776 4.723 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.117 4.117 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.019 3.981 10 N -0.254 5.254 11 C 0.018 3.982 12 C -0.002 4.002 13 N -0.103 5.103 14 N -0.103 5.103 15 C 0.005 3.995 16 C 0.001 3.999 17 C -0.151 4.151 18 C -0.235 4.235 19 C -0.081 4.081 20 O -0.058 6.058 21 O -0.093 6.093 22 C -0.030 4.030 23 C -0.113 4.113 24 C -0.081 4.081 25 C -0.199 4.199 26 C -0.072 4.072 27 N -0.204 5.204 28 C -0.048 4.048 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.230 0.770 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.684 -6.312 4.650 16.646 hybrid contribution -0.488 0.740 -0.004 0.886 sum 14.197 -5.572 4.647 15.943 Atomic orbital electron populations 1.69888 1.06250 1.27164 1.49631 1.24782 0.94497 0.98872 0.93576 0.86933 0.80973 0.84129 0.78311 1.20401 1.21037 1.18802 1.21393 0.89766 0.94645 1.53145 0.90423 1.20390 0.95385 0.84705 0.97652 1.62482 1.59081 1.04897 0.98896 1.20527 0.98101 0.95404 0.84209 1.28178 0.80532 0.94122 0.97374 1.74702 1.21828 1.09851 1.03935 1.74947 0.98178 1.21319 1.15880 1.23557 0.95672 0.89084 0.91194 1.17862 0.86679 0.95440 0.99913 1.21881 0.97812 0.99950 0.95485 1.21837 0.96843 1.00014 1.04763 1.24354 0.94820 0.98348 0.90591 1.84129 1.24968 1.47450 1.49290 1.84947 1.35508 1.47905 1.40987 1.20908 0.99086 0.95695 0.87334 1.20745 0.96095 0.97797 0.96642 1.21822 1.00554 0.93588 0.92137 1.22130 0.96836 1.01975 0.98948 1.22615 0.93260 0.93382 0.97957 1.67647 1.35536 1.13564 1.03633 1.22574 0.91272 0.97749 0.93251 0.92544 0.94487 0.95307 0.88729 0.87524 0.81676 0.82227 0.77041 0.90909 0.90612 0.83735 0.85257 0.83514 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 2 C 0.09 2.37 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 21.64 27.57 -169.99 -4.69 16.95 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.68 6.40 56.52 0.36 -6.32 16 7 C -0.55 -13.92 7.91 -34.44 -0.27 -14.20 16 8 H 0.08 2.05 6.18 -52.48 -0.32 1.72 16 9 C 0.14 3.29 3.82 -4.98 -0.02 3.27 16 10 N -0.53 -9.87 4.65 -238.97 -1.11 -10.98 16 11 C 0.15 2.51 5.42 -4.98 -0.03 2.49 16 12 C 0.21 3.96 7.10 -12.91 -0.09 3.87 16 13 N -0.26 -5.52 11.38 32.59 0.37 -5.15 16 14 N -0.25 -5.01 12.25 31.95 0.39 -4.62 16 15 C 0.21 3.74 8.28 -14.11 -0.12 3.62 16 16 C 0.05 0.75 7.24 -36.72 -0.27 0.48 16 17 C -0.13 -1.52 10.83 -39.34 -0.43 -1.95 16 18 C -0.22 -1.86 10.88 -39.84 -0.43 -2.29 16 19 C -0.01 -0.10 12.08 29.53 0.36 0.26 16 20 O -0.16 -2.07 10.67 4.55 0.05 -2.02 16 21 O -0.21 -3.88 10.90 3.40 0.04 -3.84 16 22 C 0.10 1.58 4.96 -4.98 -0.02 1.55 16 23 C -0.11 -1.80 4.88 -104.48 -0.51 -2.31 16 24 C -0.05 -0.90 8.73 -39.28 -0.34 -1.25 16 25 C -0.18 -2.59 10.11 -39.44 -0.40 -2.99 16 26 C 0.08 1.21 11.18 -17.54 -0.20 1.01 16 27 N -0.50 -7.89 10.36 -13.25 -0.14 -8.03 16 28 C 0.11 1.69 10.88 -17.55 -0.19 1.50 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.04 0.93 5.22 -51.93 -0.27 0.66 16 31 H 0.03 0.68 6.34 -51.93 -0.33 0.35 16 32 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 33 H 0.11 1.98 6.69 -51.93 -0.35 1.63 16 34 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.07 0.95 7.81 -51.93 -0.41 0.55 16 38 H 0.08 1.36 5.98 -51.93 -0.31 1.05 16 39 H 0.14 2.57 8.06 -52.49 -0.42 2.15 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -32.80 362.92 -6.43 -39.24 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.53 Total: 2.70 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.06 Total: -4.65 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.29 Total: -53.84 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: 0.09 Total: -5.87 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.69 Total: 16.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.80 -6.43 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072314833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.826 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds