Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35496 * 116.99940 * 2 1 4 4 N 1.31382 * 119.95116 * 6.32298 * 3 2 1 5 5 C 1.33673 * 122.57217 * 180.02562 * 4 3 2 6 6 C 1.47926 * 119.24241 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99888 * 189.95074 * 6 5 4 8 8 N 1.34774 * 120.00021 * 9.95111 * 6 5 4 9 9 C 1.46506 * 120.00069 * 186.48900 * 8 6 5 10 10 C 1.50700 * 109.47190 * 89.99625 * 9 8 6 11 11 H 1.07993 * 120.00153 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99645 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00141 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99888 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47286 * 60.00390 * 14 12 10 16 16 H 1.48500 * 109.47412 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47305 * 300.00499 * 14 12 10 18 18 C 1.46497 * 120.00115 * 6.48419 * 8 6 5 19 19 C 1.52999 * 109.46975 * 83.97754 * 18 8 6 20 20 C 1.52999 * 117.49704 * 242.51219 * 19 18 8 21 21 C 1.53002 * 117.50085 * 173.85295 * 19 18 8 22 22 C 1.38271 * 121.51290 * 359.49278 * 5 4 3 23 23 C 1.40692 * 118.64716 * 0.75556 * 22 5 4 24 24 C 1.40237 * 122.05590 * 179.24209 * 23 22 5 25 25 C 1.36307 * 119.48122 * 180.02562 * 24 23 22 26 26 C 1.39245 * 120.94625 * 0.02562 * 25 24 23 27 27 C 1.36361 * 121.05948 * 359.96327 * 26 25 24 28 28 C 1.40043 * 119.58628 * 0.29432 * 27 26 25 29 29 H 1.09007 * 109.47425 * 304.00295 * 1 2 3 30 30 H 1.09002 * 109.47425 * 64.00119 * 1 2 3 31 31 H 1.09002 * 109.47475 * 184.00605 * 1 2 3 32 32 H 1.09000 * 109.47281 * 210.00144 * 9 8 6 33 33 H 1.09008 * 109.46634 * 329.99883 * 9 8 6 34 34 H 0.97005 * 119.99757 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47535 * 203.97298 * 18 8 6 36 36 H 1.08994 * 109.47137 * 323.97634 * 18 8 6 37 37 H 1.09005 * 115.54918 * 28.17729 * 19 18 8 38 38 H 1.09003 * 117.50319 * 359.97438 * 20 19 18 39 39 H 1.09007 * 117.50010 * 145.02132 * 20 19 18 40 40 H 1.09005 * 117.49440 * 214.97776 * 21 19 18 41 41 H 1.08994 * 117.49579 * 359.97438 * 21 19 18 42 42 H 1.07997 * 120.67392 * 180.02562 * 22 5 4 43 43 H 1.08001 * 120.25369 * 0.04346 * 24 23 22 44 44 H 1.08003 * 119.52396 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.46855 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.20747 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 7 1.3338 2.3054 0.1254 5 6 1.8858 3.5228 0.1316 6 6 1.0155 4.7101 0.2767 7 8 1.4724 5.8233 0.1041 8 7 -0.2839 4.5577 0.6003 9 6 -1.1785 5.7179 0.6051 10 6 -1.7978 5.8803 -0.7592 11 1 -1.5501 5.1885 -1.5505 12 6 -2.6813 6.9117 -0.9967 13 7 -2.9834 7.7540 -0.0329 14 14 -3.4495 7.1128 -2.6876 15 1 -4.2233 5.8920 -3.0281 16 1 -4.3562 8.2888 -2.6828 17 1 -2.3791 7.3177 -3.6964 18 6 -0.8017 3.2320 0.9471 19 6 -0.5289 2.9487 2.4257 20 6 0.3835 1.7675 2.7620 21 6 -1.1219 1.6702 3.0213 22 6 3.2525 3.6972 0.0154 23 6 4.0679 2.5596 -0.1279 24 6 5.4601 2.6545 -0.2670 25 6 6.1997 1.5177 -0.4030 26 6 5.5926 0.2646 -0.4061 27 6 4.2416 0.1371 -0.2727 28 6 3.4490 1.2835 -0.1363 29 1 -0.3634 0.5747 0.8520 30 1 -0.3634 0.4505 -0.9237 31 1 -0.3634 -1.0251 0.0718 32 1 -1.9644 5.5676 1.3453 33 1 -0.6103 6.6138 0.8552 34 1 -3.6048 8.4799 -0.2002 35 1 -1.8758 3.2020 0.7637 36 1 -0.3075 2.4774 0.3354 37 1 -0.4745 3.8261 3.0702 38 1 0.7891 1.1919 1.9299 39 1 1.0379 1.8675 3.6280 40 1 -1.4574 1.7064 4.0578 41 1 -1.7068 1.0312 2.3598 42 1 3.6842 4.6871 0.0224 43 1 5.9425 3.6209 -0.2662 44 1 7.2720 1.5900 -0.5106 45 1 6.2016 -0.6206 -0.5158 46 1 3.7851 -0.8417 -0.2766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = 40.026171 kcal Electronic energy + Delta-G solvation = -30353.651663 eV Core-core repulsion = 26403.900895 eV Total energy + Delta-G solvation = -3949.750768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38473 -39.11961 -38.87303 -37.09474 -36.61294 -34.44919 -32.60641 -32.48850 -31.48828 -29.65512 -27.80771 -27.58436 -26.11566 -24.56895 -23.80347 -22.64119 -22.24332 -22.03200 -20.58016 -19.83252 -18.22482 -17.71369 -17.45546 -16.66135 -16.28333 -16.06750 -15.68335 -15.27690 -15.05680 -14.58525 -14.49509 -14.28713 -14.10032 -13.96925 -13.79846 -13.33450 -13.25102 -12.81598 -12.42258 -12.34723 -12.08664 -12.01217 -11.88491 -11.46404 -11.31805 -11.28818 -11.16033 -10.92857 -10.91477 -10.56811 -10.27114 -10.15124 -9.87869 -9.84971 -9.64152 -9.40668 -9.26907 -8.62257 -8.40448 -7.90844 -7.53139 -6.01805 -4.06731 0.26912 0.60029 1.77857 2.63943 2.79452 3.33527 3.37663 3.40529 3.56020 3.76097 4.05843 4.15632 4.26452 4.45150 4.48943 4.64112 4.67329 4.76829 5.03048 5.05973 5.09277 5.14347 5.18317 5.21104 5.21734 5.32453 5.39198 5.49663 5.62023 5.72400 5.73439 5.76644 5.83319 5.92249 6.13820 6.17515 6.22553 6.23315 6.27592 6.28474 6.34252 6.61099 6.78659 7.05072 7.20239 7.47073 7.58393 7.71399 7.95241 8.25683 8.44835 8.88698 9.06244 9.58029 11.06104 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003781 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.034128 B = 7404.588379 C = 8303.577643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.301 6.301 3 C 0.349 3.651 4 N -0.507 5.507 5 C 0.120 3.880 6 C 0.558 3.442 7 O -0.535 6.535 8 N -0.569 5.569 9 C 0.243 3.757 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.096 3.904 19 C -0.153 4.153 20 C -0.191 4.191 21 C -0.179 4.179 22 C -0.134 4.134 23 C 0.000 4.000 24 C -0.111 4.111 25 C -0.093 4.093 26 C -0.131 4.131 27 C -0.069 4.069 28 C -0.105 4.105 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.832 -19.326 2.605 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.206 6.206 3 C 0.157 3.843 4 N -0.236 5.236 5 C -0.004 4.004 6 C 0.343 3.657 7 O -0.413 6.413 8 N -0.297 5.297 9 C 0.124 3.876 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.028 4.028 19 C -0.173 4.173 20 C -0.228 4.228 21 C -0.217 4.217 22 C -0.156 4.156 23 C -0.005 4.005 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.149 4.149 27 C -0.089 4.089 28 C -0.108 4.108 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.171 0.829 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.090 -18.731 2.643 23.004 hybrid contribution -0.046 0.334 -0.822 0.888 sum 13.044 -18.397 1.822 22.626 Atomic orbital electron populations 1.23419 0.76806 1.03863 1.03819 1.86170 1.23193 1.24036 1.87249 1.20113 0.88338 0.85382 0.90434 1.67455 1.37623 0.98268 1.20212 1.20986 0.92331 0.90059 0.97064 1.17716 0.82418 0.86681 0.78891 1.90762 1.74026 1.24643 1.51829 1.47998 1.08017 1.10323 1.63355 1.19380 0.87961 0.82971 0.97277 1.21395 1.25524 1.12873 0.96760 0.92463 1.24920 0.96490 0.95420 0.97163 1.69927 1.34949 1.16247 1.32188 0.86564 0.79037 0.77500 0.84349 1.20243 1.21163 1.20190 1.22290 1.00370 0.87209 0.92908 1.22826 1.03429 0.92307 0.98704 1.23276 0.92880 1.03631 1.03028 1.22897 0.95892 1.01422 1.01487 1.21994 0.92792 0.99431 1.01341 1.17963 0.94239 0.91434 0.96832 1.20991 0.91778 0.99570 1.00595 1.21002 1.00284 0.92356 0.97577 1.20913 0.94791 0.97788 1.01450 1.20953 0.93644 0.97712 0.96581 1.18041 0.90942 0.94651 1.07128 0.90288 0.91778 0.88171 0.94772 0.93703 0.92671 0.90791 0.84278 0.88292 0.88161 0.89993 0.89195 0.88990 0.82904 0.84588 0.85471 0.85560 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.60 101.05 0.97 1.12 16 2 O -0.30 -3.52 9.45 -18.18 -0.17 -3.70 16 3 C 0.35 4.79 6.30 -16.56 -0.10 4.69 16 4 N -0.51 -8.03 3.41 -9.60 -0.03 -8.06 16 5 C 0.12 2.17 6.60 -83.09 -0.55 1.62 16 6 C 0.56 12.52 7.57 -12.29 -0.09 12.43 16 7 O -0.53 -13.75 15.86 5.32 0.08 -13.66 16 8 N -0.57 -12.84 2.47 -176.14 -0.44 -13.27 16 9 C 0.24 6.53 5.18 -5.19 -0.03 6.51 16 10 C -0.53 -15.19 9.39 -34.44 -0.32 -15.52 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 14 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.10 1.75 5.10 -4.04 -0.02 1.73 16 19 C -0.15 -2.45 5.92 -90.62 -0.54 -2.98 16 20 C -0.19 -2.59 8.94 -26.69 -0.24 -2.83 16 21 C -0.18 -2.25 9.76 -26.69 -0.26 -2.51 16 22 C -0.13 -2.10 9.40 -38.64 -0.36 -2.46 16 23 C 0.00 0.00 5.74 -106.85 -0.61 -0.61 16 24 C -0.11 -1.13 9.81 -39.53 -0.39 -1.52 16 25 C -0.09 -0.77 9.95 -39.90 -0.40 -1.17 16 26 C -0.13 -1.08 9.95 -39.88 -0.40 -1.48 16 27 C -0.07 -0.69 9.58 -39.58 -0.38 -1.07 16 28 C -0.10 -1.34 5.76 -106.66 -0.61 -1.95 16 29 H 0.08 0.86 2.86 -51.93 -0.15 0.71 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.34 7.34 -51.92 -0.38 0.96 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 36 H 0.14 2.35 2.53 -79.32 -0.20 2.15 16 37 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 38 H 0.10 1.33 2.72 -51.93 -0.14 1.19 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.02 7.35 -51.93 -0.38 0.64 16 42 H 0.15 2.33 7.63 -52.49 -0.40 1.93 16 43 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -33.48 370.54 -9.50 -42.98 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.82 Total: 3.45 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -4.43 Total: -4.31 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.27 Total: -47.41 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.09 Total: -17.36 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.48 -9.50 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.007 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds