Wall clock time and date at job start Tue Mar 31 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35496 * 116.99940 * 2 1 4 4 N 1.31382 * 119.95116 * 6.32298 * 3 2 1 5 5 C 1.33673 * 122.57217 * 180.02562 * 4 3 2 6 6 C 1.47926 * 119.24241 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99888 * 189.95074 * 6 5 4 8 8 N 1.34774 * 120.00021 * 9.95111 * 6 5 4 9 9 C 1.46506 * 120.00069 * 186.48900 * 8 6 5 10 10 C 1.50700 * 109.47190 * 89.99625 * 9 8 6 11 11 H 1.07993 * 120.00153 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99645 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00141 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99888 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47286 * 60.00390 * 14 12 10 16 16 H 1.48500 * 109.47412 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47305 * 300.00499 * 14 12 10 18 18 C 1.46497 * 120.00115 * 6.48419 * 8 6 5 19 19 C 1.52999 * 109.46975 * 83.97754 * 18 8 6 20 20 C 1.52999 * 117.49704 * 242.51219 * 19 18 8 21 21 C 1.53002 * 117.50085 * 173.85295 * 19 18 8 22 22 C 1.38271 * 121.51290 * 359.49278 * 5 4 3 23 23 C 1.40692 * 118.64716 * 0.75556 * 22 5 4 24 24 C 1.40237 * 122.05590 * 179.24209 * 23 22 5 25 25 C 1.36307 * 119.48122 * 180.02562 * 24 23 22 26 26 C 1.39245 * 120.94625 * 0.02562 * 25 24 23 27 27 C 1.36361 * 121.05948 * 359.96327 * 26 25 24 28 28 C 1.40043 * 119.58628 * 0.29432 * 27 26 25 29 29 H 1.09007 * 109.47425 * 304.00295 * 1 2 3 30 30 H 1.09002 * 109.47425 * 64.00119 * 1 2 3 31 31 H 1.09002 * 109.47475 * 184.00605 * 1 2 3 32 32 H 1.09000 * 109.47281 * 210.00144 * 9 8 6 33 33 H 1.09008 * 109.46634 * 329.99883 * 9 8 6 34 34 H 0.97005 * 119.99757 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47535 * 203.97298 * 18 8 6 36 36 H 1.08994 * 109.47137 * 323.97634 * 18 8 6 37 37 H 1.09005 * 115.54918 * 28.17729 * 19 18 8 38 38 H 1.09003 * 117.50319 * 359.97438 * 20 19 18 39 39 H 1.09007 * 117.50010 * 145.02132 * 20 19 18 40 40 H 1.09005 * 117.49440 * 214.97776 * 21 19 18 41 41 H 1.08994 * 117.49579 * 359.97438 * 21 19 18 42 42 H 1.07997 * 120.67392 * 180.02562 * 22 5 4 43 43 H 1.08001 * 120.25369 * 0.04346 * 24 23 22 44 44 H 1.08003 * 119.52396 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.46855 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.20747 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 7 1.3338 2.3054 0.1254 5 6 1.8858 3.5228 0.1316 6 6 1.0155 4.7101 0.2767 7 8 1.4724 5.8233 0.1041 8 7 -0.2839 4.5577 0.6003 9 6 -1.1785 5.7179 0.6051 10 6 -1.7978 5.8803 -0.7592 11 1 -1.5501 5.1885 -1.5505 12 6 -2.6813 6.9117 -0.9967 13 7 -2.9834 7.7540 -0.0329 14 14 -3.4495 7.1128 -2.6876 15 1 -4.2233 5.8920 -3.0281 16 1 -4.3562 8.2888 -2.6828 17 1 -2.3791 7.3177 -3.6964 18 6 -0.8017 3.2320 0.9471 19 6 -0.5289 2.9487 2.4257 20 6 0.3835 1.7675 2.7620 21 6 -1.1219 1.6702 3.0213 22 6 3.2525 3.6972 0.0154 23 6 4.0679 2.5596 -0.1279 24 6 5.4601 2.6545 -0.2670 25 6 6.1997 1.5177 -0.4030 26 6 5.5926 0.2646 -0.4061 27 6 4.2416 0.1371 -0.2727 28 6 3.4490 1.2835 -0.1363 29 1 -0.3634 0.5747 0.8520 30 1 -0.3634 0.4505 -0.9237 31 1 -0.3634 -1.0251 0.0718 32 1 -1.9644 5.5676 1.3453 33 1 -0.6103 6.6138 0.8552 34 1 -3.6048 8.4799 -0.2002 35 1 -1.8758 3.2020 0.7637 36 1 -0.3075 2.4774 0.3354 37 1 -0.4745 3.8261 3.0702 38 1 0.7891 1.1919 1.9299 39 1 1.0379 1.8675 3.6280 40 1 -1.4574 1.7064 4.0578 41 1 -1.7068 1.0312 2.3598 42 1 3.6842 4.6871 0.0224 43 1 5.9425 3.6209 -0.2662 44 1 7.2720 1.5900 -0.5106 45 1 6.2016 -0.6206 -0.5158 46 1 3.7851 -0.8417 -0.2766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075582804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:01 Heat of formation + Delta-G solvation = 20.211827 kcal Electronic energy + Delta-G solvation = -30354.510878 eV Core-core repulsion = 26403.900895 eV Total energy + Delta-G solvation = -3950.609983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46182 -40.62863 -39.81373 -38.37984 -37.74087 -36.25190 -34.63099 -33.48898 -32.48874 -30.78678 -29.69357 -28.49963 -27.62224 -26.11538 -24.69856 -24.30193 -23.30460 -23.00837 -21.93159 -21.22888 -19.22897 -19.05257 -18.67126 -18.41259 -17.61336 -17.33102 -17.01025 -16.57874 -16.34033 -16.17415 -15.84532 -15.57477 -15.16950 -15.00077 -14.83313 -14.57894 -14.53610 -14.24590 -14.12276 -13.73389 -13.40548 -13.15463 -12.99410 -12.94549 -12.72579 -12.55867 -12.53511 -12.34235 -12.24965 -12.08052 -12.02951 -11.83233 -11.35251 -11.18604 -11.02816 -10.77024 -10.67337 -10.13076 -10.04209 -9.38026 -8.87478 -8.24942 -6.41297 -0.74461 -0.34456 0.84664 1.33866 1.38952 1.45399 1.49192 1.84514 2.16526 2.32249 2.39352 2.90187 2.97962 3.03370 3.04536 3.53496 3.64964 3.76302 3.88587 3.96395 4.01211 4.03321 4.17695 4.30594 4.35690 4.39137 4.44598 4.56277 4.66590 4.70382 4.71459 4.72902 4.77255 4.84966 4.93272 5.02066 5.06225 5.09389 5.16366 5.22832 5.29223 5.42226 5.46773 5.49139 5.57178 5.79826 5.88645 6.01276 6.08887 6.51491 6.66296 6.72928 7.18636 7.34818 8.82130 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003781 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.034128 B = 7404.588379 C = 8303.577643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.292 6.292 3 C 0.351 3.649 4 N -0.523 5.523 5 C 0.089 3.911 6 C 0.550 3.450 7 O -0.587 6.587 8 N -0.576 5.576 9 C 0.261 3.739 10 C -0.547 4.547 11 H 0.051 0.949 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.971 3.029 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.277 1.277 18 C 0.098 3.902 19 C -0.184 4.184 20 C -0.177 4.177 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.019 4.019 24 C -0.121 4.121 25 C -0.079 4.079 26 C -0.111 4.111 27 C -0.078 4.078 28 C -0.111 4.111 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.138 0.862 32 H 0.020 0.980 33 H 0.000 1.000 34 H 0.269 0.731 35 H 0.058 0.942 36 H 0.160 0.840 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.871 -23.669 1.549 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.197 6.197 3 C 0.158 3.842 4 N -0.252 5.252 5 C -0.034 4.034 6 C 0.338 3.662 7 O -0.469 6.469 8 N -0.303 5.303 9 C 0.140 3.860 10 C -0.585 4.585 11 H 0.070 0.930 12 C -0.189 4.189 13 N -0.566 5.566 14 Si 0.794 3.206 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.202 1.202 18 C -0.024 4.024 19 C -0.203 4.203 20 C -0.213 4.213 21 C -0.189 4.189 22 C -0.148 4.148 23 C -0.023 4.023 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.129 4.129 27 C -0.098 4.098 28 C -0.114 4.114 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.038 0.962 33 H 0.018 0.982 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.176 0.824 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.183 0.817 45 H 0.183 0.817 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.121 -23.125 1.608 27.677 hybrid contribution -0.448 1.528 -0.467 1.660 sum 14.674 -21.597 1.141 26.135 Atomic orbital electron populations 1.23622 0.75887 1.06056 1.02922 1.86203 1.24028 1.22565 1.86921 1.20305 0.89035 0.85172 0.89654 1.67028 1.38244 0.98024 1.21879 1.20161 0.92119 0.89306 1.01825 1.18432 0.82516 0.87815 0.77466 1.90695 1.75019 1.27061 1.54093 1.47996 1.08013 1.10660 1.63666 1.18824 0.87465 0.83368 0.96376 1.21615 1.26275 1.13422 0.97199 0.93045 1.25884 0.96726 0.94703 1.01616 1.70056 1.35377 1.16686 1.34490 0.85428 0.78143 0.78379 0.78622 1.18419 1.19914 1.20216 1.22519 0.99372 0.85401 0.95081 1.22555 1.07892 0.93070 0.96832 1.23276 0.93640 1.01292 1.03123 1.23048 0.95387 0.98057 1.02364 1.22026 0.92226 1.00315 1.00264 1.18100 0.95438 0.90636 0.98105 1.21256 0.90490 1.01445 1.00664 1.21494 1.02067 0.91481 0.94731 1.21443 0.94340 0.99197 0.97924 1.21229 0.94385 0.97376 0.96773 1.18296 0.90764 0.95520 1.06832 0.91263 0.92666 0.84360 0.96189 0.98180 0.92232 0.92325 0.82368 0.91099 0.87546 0.89613 0.87677 0.86932 0.83800 0.83248 0.81727 0.81662 0.82749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.60 113.37 1.09 1.25 16 2 O -0.29 -6.15 9.45 -87.97 -0.83 -6.98 16 3 C 0.35 9.28 6.30 85.53 0.54 9.81 16 4 N -0.52 -16.99 3.41 -297.68 -1.02 -18.00 16 5 C 0.09 3.42 6.60 41.44 0.27 3.69 16 6 C 0.55 27.09 7.57 86.81 0.66 27.75 16 7 O -0.59 -33.36 15.86 -3.89 -0.06 -33.43 16 8 N -0.58 -28.51 2.47 -829.46 -2.05 -30.56 16 9 C 0.26 15.37 5.18 85.63 0.44 15.81 16 10 C -0.55 -33.49 9.39 25.60 0.24 -33.25 16 11 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 12 C 0.01 0.60 5.46 84.65 0.46 1.06 16 13 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 14 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 15 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 C 0.10 3.85 5.10 86.38 0.44 4.29 16 19 C -0.18 -6.20 5.92 -10.79 -0.06 -6.26 16 20 C -0.18 -4.71 8.94 30.62 0.27 -4.43 16 21 C -0.15 -3.64 9.76 30.62 0.30 -3.34 16 22 C -0.13 -4.16 9.40 22.88 0.22 -3.95 16 23 C -0.02 -0.47 5.74 -21.30 -0.12 -0.59 16 24 C -0.12 -2.14 9.81 22.31 0.22 -1.92 16 25 C -0.08 -0.91 9.95 22.06 0.22 -0.69 16 26 C -0.11 -1.21 9.95 22.07 0.22 -0.99 16 27 C -0.08 -1.24 9.58 22.27 0.21 -1.02 16 28 C -0.11 -2.63 5.76 -21.19 -0.12 -2.75 16 29 H 0.07 1.39 2.86 -2.38 -0.01 1.39 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 33 H 0.00 0.01 7.34 -2.38 -0.02 -0.01 16 34 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 35 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 36 H 0.16 5.60 2.53 -56.46 -0.14 5.45 16 37 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.11 2.72 2.72 -2.39 -0.01 2.72 16 39 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.11 2.26 7.35 -2.39 -0.02 2.24 16 42 H 0.14 4.81 7.63 -2.91 -0.02 4.79 16 43 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 45 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 46 H 0.15 1.86 7.65 -2.91 -0.02 1.84 16 Total: -1.00 -80.68 370.54 4.74 -75.94 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.89 Total: 17.88 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.50 Total: 4.46 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -2.78 Total: -106.29 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.89 Total: -40.41 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -80.68 4.74 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.155 kcal (2) G-P(sol) polarization free energy of solvation -80.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds