Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99816 * 2 1 4 4 C 1.38760 * 120.05219 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94010 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05535 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11282 * 359.96456 * 6 5 4 8 8 C 1.50699 * 119.97017 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47168 * 159.99897 * 8 7 6 10 10 O 1.42899 * 109.47423 * 39.99296 * 8 7 6 11 11 C 1.53005 * 109.46861 * 279.99196 * 8 7 6 12 12 N 1.46500 * 109.46730 * 185.00350 * 11 8 7 13 13 C 1.34782 * 119.99495 * 180.02562 * 12 11 8 14 14 O 1.21547 * 119.99957 * 359.97438 * 13 12 11 15 15 C 1.47882 * 120.00100 * 179.97438 * 13 12 11 16 16 C 1.39926 * 120.01951 * 359.72649 * 15 13 12 17 17 C 1.38334 * 120.35274 * 179.78397 * 16 15 13 18 18 C 1.37746 * 120.41307 * 0.46857 * 17 16 15 19 19 C 1.40745 * 120.04084 * 359.78618 * 18 17 16 20 20 C 1.41442 * 120.17888 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99835 * 334.92661 * 20 19 18 22 22 C 1.39938 * 120.00087 * 154.92554 * 20 19 18 23 23 N 1.30831 * 119.99756 * 342.59684 * 22 20 19 24 24 Si 1.86800 * 119.99906 * 162.58948 * 22 20 19 25 25 H 1.48496 * 109.47074 * 60.00555 * 24 22 20 26 26 H 1.48506 * 109.46759 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47198 * 300.00236 * 24 22 20 28 28 C 1.38992 * 120.02929 * 179.97438 * 15 13 12 29 29 C 1.38164 * 120.05404 * 0.26518 * 7 6 5 30 30 H 1.09005 * 109.47252 * 299.99910 * 1 2 3 31 31 H 1.09003 * 109.47837 * 59.99922 * 1 2 3 32 32 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 33 33 H 1.07991 * 120.02889 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.97006 * 180.02562 * 5 4 3 35 35 H 1.08005 * 119.93950 * 179.97438 * 6 5 4 36 36 H 0.96701 * 114.00061 * 300.00136 * 10 8 7 37 37 H 1.09002 * 109.46823 * 65.00476 * 11 8 7 38 38 H 1.08993 * 109.47055 * 305.00265 * 11 8 7 39 39 H 0.96994 * 120.00644 * 359.97438 * 12 11 8 40 40 H 1.07993 * 119.82710 * 359.97438 * 16 15 13 41 41 H 1.08003 * 119.78937 * 180.23525 * 17 16 15 42 42 H 1.08006 * 119.97937 * 179.76167 * 18 17 16 43 43 H 0.96996 * 119.99696 * 180.02562 * 23 22 20 44 44 H 1.07999 * 120.19995 * 359.96541 * 28 15 13 45 45 H 1.08002 * 120.02585 * 179.74991 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9206 3.6048 0.0000 6 6 3.3017 3.6759 -0.0016 7 6 4.0558 2.5172 -0.0019 8 6 5.5606 2.5984 -0.0031 9 1 5.9757 1.6538 0.3483 10 8 5.9814 3.6549 0.8622 11 6 6.0553 2.8755 -1.4242 12 7 7.5195 2.8360 -1.4479 13 6 8.1809 3.0537 -2.6020 14 8 7.5624 3.2823 -3.6231 15 6 9.6590 3.0144 -2.6260 16 6 10.3716 2.7569 -1.4496 17 6 11.7542 2.7141 -1.4650 18 6 12.4456 2.9339 -2.6359 19 6 11.7461 3.1997 -3.8280 20 6 12.4532 3.4263 -5.0319 21 1 13.4678 3.7948 -5.0010 22 6 11.8380 3.1730 -6.2630 23 7 10.7673 2.4231 -6.3172 24 14 12.5453 3.9059 -7.8289 25 1 13.9367 3.4224 -8.0171 26 1 11.7155 3.4908 -8.9884 27 1 12.5456 5.3873 -7.7259 28 6 10.3416 3.2383 -3.8159 29 6 3.4310 1.2850 -0.0062 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2127 2.3203 0.0005 34 1 1.3337 4.5114 0.0008 35 1 3.7920 4.6383 -0.0024 36 1 5.6484 4.5268 0.6091 37 1 5.7131 3.8603 -1.7424 38 1 5.6603 2.1176 -2.1006 39 1 8.0131 2.6539 -0.6331 40 1 9.8394 2.5876 -0.5253 41 1 12.2949 2.5108 -0.5525 42 1 13.5252 2.9027 -2.6392 43 1 10.3411 2.2473 -7.1705 44 1 9.7957 3.4408 -4.7255 45 1 4.0206 0.3801 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075610512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -82.722532 kcal Electronic energy + Delta-G solvation = -27882.882215 eV Core-core repulsion = 23830.090001 eV Total energy + Delta-G solvation = -4052.792214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61579 -39.38105 -38.50352 -37.04911 -36.57452 -34.03507 -33.62770 -32.02350 -30.69037 -30.21539 -29.42087 -28.13652 -27.47814 -25.29702 -23.96494 -22.97519 -22.02532 -21.27418 -20.88248 -19.53657 -18.48726 -17.81018 -16.86233 -16.77328 -16.37594 -16.08806 -15.94341 -15.54536 -15.33349 -14.94037 -14.69217 -14.39673 -14.12880 -13.85159 -13.64403 -13.60137 -13.16704 -13.06806 -12.65328 -12.61498 -12.45856 -12.32621 -12.02845 -11.79653 -11.61527 -11.40491 -11.14011 -11.11570 -11.05817 -10.72326 -10.50776 -10.43988 -10.01932 -9.67342 -9.23036 -9.19462 -8.99495 -8.68593 -8.53497 -7.61070 -7.49806 -6.78026 -4.39750 0.92184 1.11958 2.22600 2.83915 2.88294 3.08530 3.10340 3.18043 3.33409 3.64930 3.87545 3.93553 4.21601 4.40604 4.43446 4.65051 4.67084 4.69833 4.73331 4.75401 4.89266 4.96171 5.07760 5.18356 5.28625 5.60168 5.61389 5.63667 5.75237 5.91231 5.93977 6.07920 6.12066 6.21629 6.30816 6.37629 6.73553 6.82438 7.00395 7.03506 7.03788 7.23050 7.33895 7.40087 7.72188 7.77641 7.94392 8.10762 8.20866 8.52108 8.81921 8.85197 8.95594 10.16859 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002073 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.913478 B =13501.198101 C =14277.687380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.208 4.208 5 C -0.076 4.076 6 C -0.146 4.146 7 C -0.073 4.073 8 C 0.138 3.862 9 H 0.117 0.883 10 O -0.548 6.548 11 C 0.097 3.903 12 N -0.732 5.732 13 C 0.564 3.436 14 O -0.547 6.547 15 C -0.128 4.128 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.211 4.211 19 C 0.098 3.902 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.785 5.785 24 Si 0.911 3.089 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.092 4.092 29 C -0.138 4.138 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.376 0.624 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.403 0.597 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.285 0.715 44 H 0.133 0.867 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.985 -0.751 12.512 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.226 4.226 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.074 4.074 8 C 0.079 3.921 9 H 0.135 0.865 10 O -0.354 6.354 11 C -0.028 4.028 12 N -0.387 5.387 13 C 0.355 3.645 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.236 4.236 17 C -0.116 4.116 18 C -0.231 4.231 19 C 0.096 3.904 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.409 5.409 24 Si 0.735 3.265 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.112 4.112 29 C -0.157 4.157 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.225 0.775 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.240 0.760 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.237 -1.389 11.894 22.660 hybrid contribution -0.221 0.639 -0.639 0.931 sum -19.458 -0.750 11.255 22.491 Atomic orbital electron populations 1.23068 0.78296 1.04060 1.01347 1.86088 1.21455 1.26841 1.88651 1.18973 0.92212 0.84250 0.96249 1.21262 1.00072 0.92436 1.08868 1.20897 0.94386 0.97098 0.97072 1.20814 0.93937 0.97902 1.03743 1.20174 0.95994 0.92945 0.98248 1.21061 0.88629 0.92604 0.89839 0.86521 1.86644 1.76010 1.18658 1.54048 1.21876 0.82199 1.02820 0.95906 1.45841 1.05657 1.74953 1.12246 1.18864 0.88562 0.74947 0.82145 1.90697 1.69750 1.48973 1.33140 1.19454 0.89929 1.07968 0.95775 1.20371 0.94061 1.13694 0.95473 1.20444 0.93689 1.00769 0.96746 1.21105 0.98030 1.10221 0.93729 1.17598 0.91527 0.88770 0.92530 1.19547 1.00579 1.39046 0.89812 0.90123 1.25965 0.94339 0.92920 1.01387 1.69784 1.16827 1.25680 1.28594 0.86322 0.79687 0.80605 0.79878 1.18976 1.20252 1.18738 1.21631 0.94313 0.99305 0.95949 1.20250 0.91517 0.98146 1.05747 0.92647 0.92577 0.88141 0.85439 0.85511 0.85765 0.77504 0.91319 0.90673 0.76042 0.89088 0.88862 0.88613 0.90412 0.84892 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.12 10.50 -19.44 -0.20 -3.32 16 3 C 0.13 1.32 6.69 -39.22 -0.26 1.06 16 4 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 5 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 6 C -0.15 -1.32 9.32 -39.56 -0.37 -1.69 16 7 C -0.07 -0.74 4.97 -104.65 -0.52 -1.26 16 8 C 0.14 1.47 3.24 -27.88 -0.09 1.38 16 9 H 0.12 1.19 8.01 -51.93 -0.42 0.78 16 10 O -0.55 -5.82 13.13 -35.23 -0.46 -6.28 16 11 C 0.10 1.32 5.29 -4.04 -0.02 1.30 16 12 N -0.73 -12.13 5.45 -61.24 -0.33 -12.47 16 13 C 0.56 12.43 7.77 -12.31 -0.10 12.33 16 14 O -0.55 -13.83 16.33 5.32 0.09 -13.74 16 15 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 16 C -0.22 -4.59 9.55 -38.91 -0.37 -4.96 16 17 C -0.10 -2.12 10.01 -39.73 -0.40 -2.51 16 18 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 19 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 20 C -0.46 -12.18 9.05 -37.73 -0.34 -12.53 16 21 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 22 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 23 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16 24 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 28 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 29 C -0.14 -1.47 9.61 -39.44 -0.38 -1.85 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.88 6.78 -52.48 -0.36 0.52 16 36 H 0.38 2.92 7.50 45.56 0.34 3.27 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.40 6.00 6.49 -40.82 -0.26 5.74 16 40 H 0.09 1.62 6.38 -52.49 -0.33 1.28 16 41 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 43 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 44 H 0.13 3.87 5.76 -52.49 -0.30 3.57 16 45 H 0.13 1.32 8.04 -52.49 -0.42 0.90 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -32.46 381.65 -9.16 -41.61 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -4.97 Total: 13.78 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -4.61 Total: -18.87 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.28 Total: -32.83 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.58 Total: -23.34 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.46 -9.16 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075610512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.108 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds