Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35895 * 117.00726 * 2 1 4 4 C 1.38758 * 120.05358 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94625 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05273 * 359.74623 * 5 4 3 7 7 C 1.38246 * 120.11206 * 0.50660 * 6 5 4 8 8 C 1.50701 * 119.96961 * 179.76640 * 7 6 5 9 9 H 1.09000 * 109.46563 * 204.72487 * 8 7 6 10 10 O 1.42897 * 109.46945 * 324.72310 * 8 7 6 11 11 C 1.52995 * 109.46785 * 84.72649 * 8 7 6 12 12 N 1.46501 * 109.47114 * 179.97438 * 11 8 7 13 13 C 1.34777 * 120.00226 * 179.97438 * 12 11 8 14 14 O 1.21546 * 120.00182 * 0.02562 * 13 12 11 15 15 C 1.47890 * 119.99668 * 180.02562 * 13 12 11 16 16 C 1.39918 * 120.02788 * 359.72675 * 15 13 12 17 17 C 1.38330 * 120.35706 * 180.29496 * 16 15 13 18 18 C 1.37755 * 120.41081 * 359.96076 * 17 16 15 19 19 C 1.40744 * 120.04006 * 0.03822 * 18 17 16 20 20 C 1.41441 * 120.17649 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00052 * 334.92678 * 20 19 18 22 22 C 1.39935 * 120.00220 * 154.92915 * 20 19 18 23 23 N 1.30833 * 119.99893 * 342.58966 * 22 20 19 24 24 Si 1.86796 * 120.00048 * 162.59107 * 22 20 19 25 25 H 1.48496 * 109.47216 * 60.00008 * 24 22 20 26 26 H 1.48507 * 109.47029 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46946 * 299.99869 * 24 22 20 28 28 C 1.38997 * 120.01825 * 180.02562 * 15 13 12 29 29 C 1.38158 * 120.05477 * 359.49202 * 7 6 5 30 30 H 1.09003 * 109.46922 * 59.99827 * 1 2 3 31 31 H 1.08998 * 109.47432 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47218 * 300.00326 * 1 2 3 33 33 H 1.08008 * 120.02563 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.97153 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.94349 * 180.27282 * 6 5 4 36 36 H 0.96706 * 114.00093 * 60.01044 * 10 8 7 37 37 H 1.09000 * 109.47682 * 59.99868 * 11 8 7 38 38 H 1.09000 * 109.47438 * 299.99302 * 11 8 7 39 39 H 0.97003 * 119.99926 * 0.02562 * 12 11 8 40 40 H 1.07996 * 119.81813 * 0.25603 * 16 15 13 41 41 H 1.08002 * 119.79238 * 179.97438 * 17 16 15 42 42 H 1.08005 * 119.97687 * 180.02562 * 18 17 16 43 43 H 0.96995 * 120.00176 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.20336 * 359.70713 * 28 15 13 45 45 H 1.08004 * 120.03126 * 180.27421 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3021 3.6756 0.0064 7 6 4.0561 2.5168 0.0006 8 6 5.5610 2.5979 0.0011 9 1 5.9739 1.6874 -0.4334 10 8 5.9775 3.7257 -0.7713 11 6 6.0629 2.7504 1.4382 12 7 7.5258 2.8286 1.4389 13 6 8.1929 2.9665 2.6018 14 8 7.5808 3.0256 3.6502 15 6 9.6697 3.0460 2.6022 16 6 10.3752 2.9723 1.3962 17 6 11.7568 3.0398 1.3892 18 6 12.4540 3.1810 2.5689 19 6 11.7615 3.2569 3.7918 20 6 12.4744 3.4025 5.0047 21 1 13.4969 3.0617 5.0744 22 6 11.8550 3.9880 6.1145 23 7 10.7684 4.6996 5.9574 24 14 12.5796 3.7539 7.8202 25 1 13.9603 4.2995 7.8507 26 1 11.7427 4.4702 8.8162 27 1 12.6120 2.3062 8.1497 28 6 10.3581 3.1877 3.8014 29 6 3.4312 1.2847 0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2129 2.3204 0.0005 34 1 1.3342 4.5113 0.0019 35 1 3.7925 4.6378 0.0112 36 1 5.6461 4.5722 -0.4416 37 1 5.7452 1.8902 2.0274 38 1 5.6500 3.6609 1.8727 39 1 8.0144 2.7818 0.6021 40 1 9.8381 2.8615 0.4658 41 1 12.2922 2.9815 0.4531 42 1 13.5327 3.2334 2.5553 43 1 10.3388 5.1051 6.7267 44 1 9.8176 3.2448 4.7347 45 1 4.0206 0.3797 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075610515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -82.568209 kcal Electronic energy + Delta-G solvation = -27892.252687 eV Core-core repulsion = 23839.467165 eV Total energy + Delta-G solvation = -4052.785522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61831 -39.38387 -38.50475 -37.04935 -36.57063 -34.01944 -33.62368 -32.03816 -30.66939 -30.21825 -29.41997 -28.16126 -27.46873 -25.29700 -23.96418 -22.96044 -22.01754 -21.27043 -20.88179 -19.53583 -18.49463 -17.80996 -16.86645 -16.77409 -16.37237 -16.09160 -15.94284 -15.54023 -15.34943 -14.94725 -14.69505 -14.37899 -14.13093 -13.84504 -13.64505 -13.59986 -13.16402 -13.07034 -12.64527 -12.61333 -12.45833 -12.30953 -12.03425 -11.78854 -11.61588 -11.40753 -11.14438 -11.11668 -11.05292 -10.72547 -10.49831 -10.44861 -10.01842 -9.67294 -9.22492 -9.19349 -8.99219 -8.68499 -8.53255 -7.61021 -7.49680 -6.78067 -4.39699 0.92379 1.12120 2.22736 2.83975 2.88035 3.08576 3.10330 3.18166 3.33142 3.64934 3.87718 3.93655 4.21487 4.40808 4.43853 4.65523 4.68036 4.69694 4.73491 4.75051 4.88900 4.96579 5.07312 5.18143 5.29018 5.60528 5.61145 5.63416 5.75899 5.91289 5.93955 6.08261 6.12266 6.22157 6.31084 6.37454 6.73658 6.82647 7.00438 7.03605 7.03651 7.23064 7.34390 7.40146 7.72345 7.77820 7.94526 8.11169 8.21040 8.52167 8.81982 8.85254 8.95860 10.16848 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.002064 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.151478 B =13561.225648 C =14299.636389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.208 4.208 5 C -0.076 4.076 6 C -0.145 4.145 7 C -0.073 4.073 8 C 0.138 3.862 9 H 0.117 0.883 10 O -0.548 6.548 11 C 0.096 3.904 12 N -0.732 5.732 13 C 0.564 3.436 14 O -0.548 6.548 15 C -0.128 4.128 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.211 4.211 19 C 0.098 3.902 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.785 5.785 24 Si 0.911 3.089 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.092 4.092 29 C -0.139 4.139 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.377 0.623 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.404 0.596 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.285 0.715 44 H 0.133 0.867 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.987 -3.758 -12.003 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.227 4.227 5 C -0.094 4.094 6 C -0.164 4.164 7 C -0.074 4.074 8 C 0.079 3.921 9 H 0.135 0.865 10 O -0.354 6.354 11 C -0.029 4.029 12 N -0.387 5.387 13 C 0.355 3.645 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.236 4.236 17 C -0.117 4.117 18 C -0.231 4.231 19 C 0.096 3.904 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.409 5.409 24 Si 0.735 3.265 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.112 4.112 29 C -0.158 4.158 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.226 0.774 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.240 0.760 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.238 -4.210 -11.449 22.779 hybrid contribution -0.221 0.550 0.683 0.904 sum -19.459 -3.660 -10.766 22.538 Atomic orbital electron populations 1.23067 0.78297 1.04048 1.01353 1.86081 1.21452 1.26859 1.88660 1.18967 0.92208 0.84241 0.96268 1.21264 1.00069 0.92439 1.08903 1.20898 0.94387 0.97102 0.97042 1.20812 0.93918 0.97945 1.03690 1.20183 0.96012 0.92950 0.98212 1.21053 0.88650 0.91162 0.91254 0.86510 1.86637 1.76338 1.16882 1.55529 1.21866 0.82225 1.03104 0.95663 1.45831 1.05754 1.76955 1.10141 1.18866 0.88498 0.74615 0.82552 1.90697 1.70059 1.50199 1.31615 1.19455 0.89971 1.08224 0.95477 1.20371 0.94101 1.14173 0.94931 1.20445 0.93683 1.00840 0.96688 1.21108 0.98086 1.11563 0.92329 1.17598 0.91562 0.88848 0.92425 1.19547 0.99894 1.34900 0.94638 0.90127 1.25962 0.94394 0.92734 1.01514 1.69783 1.16361 1.21461 1.33297 0.86323 0.79700 0.79762 0.80711 1.18984 1.20255 1.18729 1.21632 0.94306 0.98935 0.96318 1.20231 0.91507 0.98128 1.05888 0.92646 0.88147 0.92578 0.85446 0.85508 0.85733 0.77412 0.90690 0.91313 0.75972 0.89072 0.88862 0.88615 0.90423 0.84894 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.09 10.50 -19.41 -0.20 -3.29 16 3 C 0.13 1.31 6.69 -39.21 -0.26 1.05 16 4 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 5 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 6 C -0.15 -1.33 9.33 -39.56 -0.37 -1.70 16 7 C -0.07 -0.74 5.00 -104.65 -0.52 -1.26 16 8 C 0.14 1.47 3.29 -27.88 -0.09 1.38 16 9 H 0.12 1.17 8.05 -51.93 -0.42 0.75 16 10 O -0.55 -5.88 12.88 -35.23 -0.45 -6.33 16 11 C 0.10 1.31 5.32 -4.04 -0.02 1.29 16 12 N -0.73 -12.11 5.40 -61.24 -0.33 -12.44 16 13 C 0.56 12.42 7.77 -12.31 -0.10 12.32 16 14 O -0.55 -13.83 16.33 5.33 0.09 -13.75 16 15 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 16 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 17 C -0.10 -2.12 10.01 -39.72 -0.40 -2.51 16 18 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 19 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 20 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 21 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 22 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 23 N -0.78 -20.94 10.97 55.55 0.61 -20.33 16 24 Si 0.91 18.93 29.59 -169.99 -5.03 13.89 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 28 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 29 C -0.14 -1.46 9.62 -39.44 -0.38 -1.84 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.27 7.66 -51.92 -0.40 -0.13 16 33 H 0.13 0.81 6.30 -52.48 -0.33 0.48 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.91 6.62 -52.49 -0.35 0.56 16 36 H 0.38 3.05 7.39 45.56 0.34 3.39 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.40 6.02 6.37 -40.82 -0.26 5.76 16 40 H 0.09 1.62 6.38 -52.49 -0.33 1.29 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 43 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 44 H 0.13 3.87 5.77 -52.49 -0.30 3.57 16 45 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -32.37 381.15 -9.15 -41.52 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -4.96 Total: 13.89 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -4.61 Total: -18.91 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.28 Total: -32.78 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.57 Total: -23.37 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.37 -9.15 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075610515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.045 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds