Wall clock time and date at job start Tue Mar 31 2020 04:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47194 * 2 1 4 4 C 1.36872 * 119.99808 * 273.47699 * 3 2 1 5 5 H 1.08001 * 120.00055 * 186.80396 * 4 3 2 6 6 C 1.39042 * 119.99699 * 6.53324 * 4 3 2 7 7 N 1.31368 * 120.00395 * 14.26031 * 6 4 3 8 8 Si 1.86805 * 119.99937 * 194.25831 * 6 4 3 9 9 H 1.48498 * 109.46936 * 59.99968 * 8 6 4 10 10 H 1.48503 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46971 * 300.00258 * 8 6 4 12 12 C 1.34771 * 120.00504 * 93.47840 * 3 2 1 13 13 O 1.21631 * 120.00337 * 175.08953 * 12 3 2 14 14 C 1.47381 * 119.99797 * 355.09132 * 12 3 2 15 15 C 1.38943 * 120.31515 * 56.86720 * 14 12 3 16 16 C 1.40564 * 118.09208 * 179.74553 * 15 14 12 17 17 C 1.40545 * 121.09331 * 180.21083 * 16 15 14 18 18 C 1.36159 * 119.64867 * 180.31960 * 17 16 15 19 19 C 1.39315 * 120.83224 * 0.02562 * 18 17 16 20 20 C 1.36164 * 121.07048 * 359.97399 * 19 18 17 21 21 C 1.40525 * 119.82947 * 0.05090 * 20 19 18 22 22 N 1.33822 * 120.70344 * 179.97438 * 21 20 19 23 23 C 1.31570 * 121.65318 * 180.02562 * 22 21 20 24 24 N 1.38217 * 119.35292 * 179.97438 * 23 22 21 25 25 C 1.48541 * 110.99600 * 252.25133 * 24 23 22 26 26 C 1.54933 * 103.22470 * 159.71884 * 25 24 23 27 27 C 1.54602 * 102.92499 * 322.58043 * 26 25 24 28 28 C 1.47907 * 110.99844 * 9.64271 * 24 23 22 29 29 H 1.08997 * 109.47177 * 299.99926 * 1 2 3 30 30 H 1.08997 * 109.47206 * 60.00655 * 1 2 3 31 31 H 1.08999 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47353 * 239.99691 * 2 1 3 33 33 H 1.09001 * 109.47408 * 119.99777 * 2 1 3 34 34 H 0.97001 * 120.00238 * 180.02562 * 7 6 4 35 35 H 1.07997 * 120.95198 * 359.97438 * 15 14 12 36 36 H 1.08002 * 120.17300 * 0.29764 * 17 16 15 37 37 H 1.07998 * 119.58279 * 179.97438 * 18 17 16 38 38 H 1.07996 * 119.46582 * 180.02562 * 19 18 17 39 39 H 1.07995 * 120.08413 * 179.97438 * 20 19 18 40 40 H 1.08999 * 110.66061 * 278.15113 * 25 24 23 41 41 H 1.08998 * 110.66635 * 41.28534 * 25 24 23 42 42 H 1.09003 * 110.72464 * 204.22912 * 26 25 24 43 43 H 1.09004 * 110.87877 * 81.01431 * 26 25 24 44 44 H 1.08989 * 110.31125 * 263.04772 * 27 26 25 45 45 H 1.08998 * 110.30631 * 140.87255 * 27 26 25 46 46 H 1.09000 * 109.91440 * 333.51110 * 28 24 23 47 47 H 1.08996 * 109.91578 * 94.80668 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1786 2.0504 -1.1832 5 1 2.6408 3.0264 -1.1932 6 6 1.7516 1.4711 -2.3728 7 7 0.9532 0.4281 -2.3462 8 14 2.3129 2.1759 -4.0092 9 1 3.7943 2.1152 -4.0922 10 1 1.7217 1.3844 -5.1180 11 1 1.8685 3.5886 -4.1182 12 6 2.3097 1.9930 1.1649 13 8 2.7990 3.1066 1.1614 14 6 2.0355 1.3127 2.4433 15 6 2.5904 0.0666 2.7077 16 6 2.3024 -0.5373 3.9439 17 6 2.8336 -1.7947 4.2786 18 6 2.5300 -2.3556 5.4816 19 6 1.6983 -1.6989 6.3860 20 6 1.1664 -0.4799 6.0943 21 6 1.4553 0.1322 4.8628 22 7 0.9416 1.3297 4.5577 23 6 1.1992 1.9195 3.4102 24 7 0.6428 3.1565 3.1443 25 6 -0.4328 3.0483 2.1256 26 6 -1.2579 4.3415 2.3426 27 6 -1.2305 4.5156 3.8785 28 6 -0.0004 3.7189 4.3516 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.6556 0.0237 -3.1761 35 1 3.2277 -0.4221 1.9857 36 1 3.4789 -2.3135 3.5852 37 1 2.9385 -3.3220 5.7376 38 1 1.4724 -2.1639 7.3342 39 1 0.5232 0.0147 6.8070 40 1 -0.0103 3.0255 1.1211 41 1 -1.0464 2.1657 2.3062 42 1 -2.2802 4.2110 1.9875 43 1 -0.7854 5.1911 1.8496 44 1 -2.1388 4.1076 4.3218 45 1 -1.1219 5.5686 4.1380 46 1 -0.3129 2.9129 5.0155 47 1 0.6945 4.3809 4.8683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076140164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:19 Heat of formation + Delta-G solvation = 67.554026 kcal Electronic energy + Delta-G solvation = -30814.071770 eV Core-core repulsion = 26963.233361 eV Total energy + Delta-G solvation = -3850.838409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94236 -38.97559 -38.35695 -36.19337 -35.09689 -33.35948 -31.99791 -31.68628 -30.00775 -29.41334 -28.74832 -28.53115 -25.37025 -24.13266 -23.33110 -22.25237 -21.98686 -20.98346 -20.50614 -19.82733 -18.06350 -17.16410 -17.00756 -16.47015 -15.76308 -15.58357 -15.01064 -14.67771 -14.47897 -14.28290 -14.03721 -13.84933 -13.59886 -13.39336 -13.22580 -12.90700 -12.77269 -12.62366 -12.38358 -11.87514 -11.77299 -11.59095 -11.40745 -11.31426 -11.27380 -11.11385 -11.05543 -10.91720 -10.74455 -10.43241 -10.37142 -10.27148 -10.15070 -9.80347 -9.47053 -9.04511 -8.91621 -8.38146 -8.07533 -7.76079 -7.70889 -6.32566 -3.85724 0.55819 0.99731 2.16268 2.93517 3.15144 3.20522 3.25234 3.80931 3.91456 4.05283 4.32501 4.50350 4.72012 4.81006 4.84589 4.95022 4.99248 5.05674 5.13878 5.17513 5.26659 5.37066 5.48108 5.53556 5.59857 5.69033 5.89288 5.93676 5.95672 6.01633 6.10398 6.14138 6.19833 6.20882 6.23919 6.35699 6.41295 6.47060 6.55292 6.59527 6.64898 6.71688 6.82737 6.86792 6.98674 7.28074 7.44845 7.51285 7.80366 7.99411 8.19148 8.46546 9.11708 9.34905 9.93311 10.57129 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004838 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.766698 B = 5785.998309 C = 7515.360723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.114 3.886 3 N -0.432 5.432 4 C -0.290 4.290 5 H 0.106 0.894 6 C 0.024 3.976 7 N -0.869 5.869 8 Si 0.929 3.071 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.483 3.517 13 O -0.567 6.567 14 C -0.127 4.127 15 C -0.035 4.035 16 C -0.119 4.119 17 C -0.082 4.082 18 C -0.137 4.137 19 C -0.101 4.101 20 C -0.104 4.104 21 C 0.155 3.845 22 N -0.528 5.528 23 C 0.370 3.630 24 N -0.446 5.446 25 C 0.049 3.951 26 C -0.121 4.121 27 C -0.129 4.129 28 C 0.030 3.970 29 H 0.011 0.989 30 H 0.103 0.897 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.267 0.733 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -4.601 11.596 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.009 4.009 3 N -0.150 5.150 4 C -0.417 4.417 5 H 0.124 0.876 6 C -0.178 4.178 7 N -0.510 5.510 8 Si 0.756 3.244 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.270 3.730 13 O -0.450 6.450 14 C -0.135 4.135 15 C -0.061 4.061 16 C -0.122 4.122 17 C -0.100 4.100 18 C -0.155 4.155 19 C -0.121 4.121 20 C -0.123 4.123 21 C 0.031 3.969 22 N -0.243 5.243 23 C 0.124 3.876 24 N -0.164 5.164 25 C -0.076 4.076 26 C -0.159 4.159 27 C -0.167 4.167 28 C -0.098 4.098 29 H 0.030 0.970 30 H 0.122 0.878 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.423 -3.437 11.852 12.806 hybrid contribution 0.196 -0.814 -1.068 1.357 sum -3.227 -4.251 10.784 12.033 Atomic orbital electron populations 1.22277 0.96547 0.99629 1.01673 1.21841 0.95119 0.83366 1.00533 1.43803 1.54976 1.11707 1.04562 1.19793 1.36298 1.03283 0.82367 0.87606 1.25285 0.95868 0.96905 0.99757 1.70139 1.30559 1.22791 1.27556 0.85935 0.79131 0.78878 0.80451 1.19948 1.20957 1.19845 1.17322 0.86700 0.86529 0.82400 1.90659 1.48253 1.19846 1.86282 1.20801 0.99411 0.95355 0.97925 1.21871 0.96596 0.92949 0.94726 1.18713 1.01315 0.96776 0.95385 1.20999 0.98474 0.93622 0.96948 1.20768 0.99878 1.00406 0.94478 1.20807 0.97056 0.94838 0.99421 1.20685 1.01027 0.95513 0.95079 1.18646 0.93960 0.90146 0.94099 1.67832 1.25507 1.10244 1.20721 1.19851 0.91327 0.87997 0.88395 1.61731 1.29049 1.16114 1.09515 1.23335 0.90109 0.97353 0.96802 1.22484 0.99725 0.97920 0.95762 1.22414 0.97652 1.00609 0.96056 1.22940 0.95273 0.99019 0.92522 0.97032 0.87825 0.94925 0.87669 0.94630 0.92215 0.83694 0.85451 0.85969 0.85852 0.85312 0.87933 0.93258 0.90756 0.90228 0.91552 0.91035 0.89872 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.54 37.15 0.35 -2.68 16 2 C 0.11 2.51 5.18 -4.04 -0.02 2.49 16 3 N -0.43 -10.60 2.62 -116.05 -0.30 -10.91 16 4 C -0.29 -7.60 9.52 -15.00 -0.14 -7.74 16 5 H 0.11 2.95 7.21 -52.49 -0.38 2.57 16 6 C 0.02 0.58 5.20 -17.45 -0.09 0.49 16 7 N -0.87 -20.87 7.42 55.50 0.41 -20.46 16 8 Si 0.93 19.71 29.58 -169.99 -5.03 14.68 16 9 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.48 11.88 5.07 -12.54 -0.06 11.81 16 13 O -0.57 -15.90 16.40 5.25 0.09 -15.81 16 14 C -0.13 -2.71 4.98 -104.67 -0.52 -3.23 16 15 C -0.03 -0.64 7.47 -38.44 -0.29 -0.92 16 16 C -0.12 -1.96 5.74 -106.80 -0.61 -2.57 16 17 C -0.08 -1.07 9.77 -39.46 -0.39 -1.45 16 18 C -0.14 -1.53 9.96 -39.93 -0.40 -1.93 16 19 C -0.10 -1.14 9.94 -39.93 -0.40 -1.53 16 20 C -0.10 -1.42 9.97 -39.47 -0.39 -1.81 16 21 C 0.15 2.62 6.61 -84.78 -0.56 2.06 16 22 N -0.53 -9.79 8.01 -9.98 -0.08 -9.87 16 23 C 0.37 7.50 6.03 -155.57 -0.94 6.57 16 24 N -0.45 -8.73 4.61 -168.93 -0.78 -9.51 16 25 C 0.05 0.91 5.65 -1.90 -0.01 0.90 16 26 C -0.12 -1.77 7.06 -24.87 -0.18 -1.95 16 27 C -0.13 -1.69 6.93 -25.37 -0.18 -1.87 16 28 C 0.03 0.47 6.44 -2.75 -0.02 0.45 16 29 H 0.01 0.23 7.44 -51.93 -0.39 -0.16 16 30 H 0.10 2.44 5.82 -51.93 -0.30 2.14 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 2.46 6.02 -51.93 -0.31 2.14 16 33 H 0.04 0.70 3.99 -51.93 -0.21 0.50 16 34 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 35 H 0.15 2.43 7.05 -52.49 -0.37 2.06 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.10 2.25 6.93 -51.93 -0.36 1.89 16 41 H 0.05 0.90 7.59 -51.93 -0.39 0.50 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 0.76 8.14 -51.94 -0.42 0.34 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 1.34 6.33 -51.93 -0.33 1.01 16 47 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -29.54 368.78 -11.37 -40.91 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.40 Total: 8.32 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -4.84 Total: -2.93 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.75 Total: -50.74 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.54 -11.37 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076140164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.468 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds