Wall clock time and date at job start Tue Mar 31 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48495 * 109.47383 * 239.99586 * 3 2 1 5 5 H 1.48498 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46971 * 119.99435 * 3 2 1 7 7 C 1.37883 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00385 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 270.27463 * 10 9 7 12 12 C 1.53000 * 109.47637 * 269.72749 * 11 10 9 13 13 F 1.39900 * 109.47061 * 59.99305 * 12 11 10 14 14 F 1.39894 * 109.47434 * 179.97438 * 12 11 10 15 15 F 1.39903 * 109.46538 * 299.99989 * 12 11 10 16 16 C 1.34784 * 119.99635 * 90.00174 * 10 9 7 17 17 O 1.21279 * 119.99925 * 359.97438 * 16 10 9 18 18 C 1.50700 * 119.99961 * 180.02562 * 16 10 9 19 19 N 1.46497 * 109.47128 * 180.02562 * 18 16 10 20 20 N 1.39869 * 125.46270 * 90.02690 * 19 18 16 21 21 C 1.30242 * 110.08375 * 180.02562 * 20 19 18 22 22 C 1.45924 * 107.78975 * 359.97438 * 21 20 19 23 23 C 1.39950 * 134.04176 * 180.02562 * 22 21 20 24 24 C 1.36459 * 119.63557 * 179.97438 * 23 22 21 25 25 C 1.38958 * 120.63663 * 0.02618 * 24 23 22 26 26 C 1.36596 * 120.81096 * 359.95401 * 25 24 23 27 27 C 1.37040 * 125.45518 * 269.71618 * 19 18 16 28 28 H 0.96998 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47073 * 59.99595 * 9 7 2 30 30 H 1.09004 * 109.47082 * 300.00219 * 9 7 2 31 31 H 1.09002 * 109.47192 * 29.72648 * 11 10 9 32 32 H 1.08996 * 109.47342 * 149.72358 * 11 10 9 33 33 H 1.09004 * 109.46932 * 300.00223 * 18 16 10 34 34 H 1.08997 * 109.47392 * 59.99562 * 18 16 10 35 35 H 1.08003 * 126.10740 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.17482 * 359.97438 * 23 22 21 37 37 H 1.08000 * 119.68108 * 180.02562 * 24 23 22 38 38 H 1.08001 * 119.59845 * 179.97438 * 25 24 23 39 39 H 1.08006 * 120.07464 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6836 -4.1655 -1.2681 12 6 1.7585 -5.2999 -1.7133 13 9 0.4611 -4.8045 -1.8822 14 9 2.2172 -5.8274 -2.9251 15 9 1.7509 -6.3046 -0.7398 16 6 2.6408 -4.1249 1.1678 17 8 2.2471 -3.6636 2.2181 18 6 3.6205 -5.2700 1.1679 19 7 3.9372 -5.6416 2.5491 20 7 3.2473 -6.5884 3.3133 21 6 3.7808 -6.6819 4.4977 22 6 4.9016 -5.7493 4.5568 23 6 5.8340 -5.4100 5.5438 24 6 6.7870 -4.4704 5.2773 25 6 6.8398 -3.8476 4.0362 26 6 5.9411 -4.1621 3.0568 27 6 4.9606 -5.1215 3.2976 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.6896 -3.3827 -2.0265 32 1 3.6944 -4.5515 -1.1365 33 1 3.1806 -6.1246 0.6538 34 1 4.5331 -4.9675 0.6543 35 1 3.4528 -7.3339 5.2938 36 1 5.7993 -5.8892 6.5109 37 1 7.5071 -4.2083 6.0383 38 1 7.6009 -3.1059 3.8435 39 1 5.9934 -3.6709 2.0963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079013957.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:57 Heat of formation + Delta-G solvation = -87.414272 kcal Electronic energy + Delta-G solvation = -30196.387238 eV Core-core repulsion = 25497.994492 eV Total energy + Delta-G solvation = -4698.392747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96695 -47.54675 -47.37917 -41.23358 -39.27241 -37.11443 -35.48618 -33.51865 -32.79102 -30.57305 -29.77416 -29.44595 -28.01220 -26.25156 -23.43084 -23.11367 -23.00195 -21.91185 -20.86669 -19.21177 -18.41372 -18.32868 -17.78225 -17.26170 -16.85275 -16.69228 -16.15738 -15.58338 -15.17000 -14.86757 -14.64060 -14.36209 -14.32313 -14.24709 -14.06741 -13.88377 -13.77315 -13.57881 -13.52332 -13.42027 -13.04579 -12.67619 -12.41422 -12.11301 -11.99403 -11.82040 -11.71901 -11.36356 -11.06527 -11.04044 -10.71263 -10.70400 -10.31934 -10.20933 -9.88159 -9.31305 -8.62088 -8.55263 -8.17878 -7.82201 -6.16603 -4.23243 1.00576 1.55142 2.29233 2.60864 2.66779 3.08578 3.24062 3.29927 3.30391 3.37703 3.84237 3.97656 4.08959 4.29894 4.33985 4.46119 4.56611 4.71089 4.79247 4.96097 4.98367 5.09288 5.18534 5.22081 5.29837 5.38480 5.42603 5.65615 5.79923 6.00408 6.37358 6.51649 6.53618 6.64596 6.85324 7.05818 7.13030 7.27128 7.70190 7.76523 7.89899 8.04402 8.55816 8.80004 9.42263 10.91781 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.004703 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.253913 B = 5952.351661 C = 8252.910032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.244 3.756 10 N -0.594 5.594 11 C 0.070 3.930 12 C 0.428 3.572 13 F -0.172 7.172 14 F -0.186 7.186 15 F -0.186 7.186 16 C 0.494 3.506 17 O -0.499 6.499 18 C 0.107 3.893 19 N -0.384 5.384 20 N -0.238 5.238 21 C 0.068 3.932 22 C -0.181 4.181 23 C -0.042 4.042 24 C -0.164 4.164 25 C -0.072 4.072 26 C -0.135 4.135 27 C 0.140 3.860 28 H 0.266 0.734 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.135 0.865 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.196 0.804 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 -12.806 1.950 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.126 3.874 10 N -0.327 5.327 11 C -0.058 4.058 12 C 0.372 3.628 13 F -0.153 7.153 14 F -0.167 7.167 15 F -0.168 7.168 16 C 0.278 3.722 17 O -0.372 6.372 18 C -0.019 4.019 19 N -0.171 5.171 20 N -0.050 5.050 21 C -0.129 4.129 22 C -0.189 4.189 23 C -0.062 4.062 24 C -0.184 4.184 25 C -0.093 4.093 26 C -0.157 4.157 27 C 0.025 3.975 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.213 0.787 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.107 -12.819 1.588 17.036 hybrid contribution 0.730 1.146 0.191 1.372 sum 11.836 -11.674 1.779 16.719 Atomic orbital electron populations 1.69919 1.06039 1.27439 1.49350 1.24928 0.94888 0.99294 0.94726 0.86529 0.79533 0.82548 0.78657 1.20114 1.21055 1.20135 1.21300 0.93273 0.90378 1.52508 0.92317 1.19534 0.87032 0.81383 0.99444 1.48228 1.46646 1.35616 1.02172 1.22681 0.95954 0.95166 0.91968 1.21698 0.82135 0.84232 0.74774 1.93234 1.39744 1.87151 1.95168 1.93167 1.88756 1.88104 1.46708 1.93097 1.96465 1.64178 1.63025 1.20666 0.82933 0.83965 0.84589 1.90759 1.56304 1.59828 1.30269 1.21815 1.00618 0.99487 0.79986 1.47615 1.24221 1.33810 1.11442 1.76605 1.16749 1.07046 1.04551 1.25031 0.93741 0.98846 0.95312 1.19896 1.01051 1.02973 0.94941 1.20292 0.92597 0.96023 0.97294 1.20613 1.00722 0.99489 0.97561 1.20682 0.97556 0.98272 0.92768 1.19862 0.95949 0.98677 1.01193 1.18795 0.90986 0.96047 0.91654 0.92414 0.93911 0.93322 0.84682 0.87254 0.85444 0.86831 0.78748 0.85644 0.85856 0.85502 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.34 9.39 -34.44 -0.32 -14.67 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.24 6.06 4.96 -5.20 -0.03 6.03 16 10 N -0.59 -11.58 2.37 -175.07 -0.42 -12.00 16 11 C 0.07 0.98 5.33 -4.05 -0.02 0.96 16 12 C 0.43 6.08 3.29 37.16 0.12 6.20 16 13 F -0.17 -2.94 16.25 2.25 0.04 -2.90 16 14 F -0.19 -2.35 17.32 2.25 0.04 -2.31 16 15 F -0.19 -2.73 14.28 2.25 0.03 -2.69 16 16 C 0.49 9.94 7.41 -10.98 -0.08 9.86 16 17 O -0.50 -12.63 16.01 5.56 0.09 -12.54 16 18 C 0.11 1.63 5.34 -5.20 -0.03 1.60 16 19 N -0.38 -6.48 3.14 -59.88 -0.19 -6.67 16 20 N -0.24 -4.01 12.40 31.87 0.40 -3.62 16 21 C 0.07 0.94 12.28 -15.15 -0.19 0.75 16 22 C -0.18 -2.58 6.37 -105.20 -0.67 -3.25 16 23 C -0.04 -0.48 10.07 -39.58 -0.40 -0.88 16 24 C -0.16 -1.78 9.97 -39.96 -0.40 -2.18 16 25 C -0.07 -0.84 9.96 -39.91 -0.40 -1.24 16 26 C -0.13 -1.89 9.97 -39.79 -0.40 -2.29 16 27 C 0.14 2.23 6.87 -84.17 -0.58 1.65 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.04 1.08 7.27 -51.93 -0.38 0.70 16 30 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 31 H 0.14 1.78 8.07 -51.93 -0.42 1.36 16 32 H 0.11 1.06 6.44 -51.93 -0.33 0.73 16 33 H 0.13 1.77 5.46 -51.93 -0.28 1.48 16 34 H 0.11 1.30 7.39 -51.93 -0.38 0.92 16 35 H 0.20 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -35.26 351.03 -6.33 -41.59 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.84 Total: 0.57 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -3.48 Total: 4.23 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.53 Total: -47.31 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.11 Total: -7.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.26 -6.33 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079013957.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.828 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds