Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40205 * 119.80828 * 2 1 4 4 C 1.35576 * 119.32525 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.46007 * 180.02562 * 4 3 2 6 6 N 1.36453 * 119.07740 * 0.02562 * 4 3 2 7 7 C 1.36843 * 132.73436 * 179.97438 * 6 4 3 8 8 C 1.35000 * 107.09447 * 180.02562 * 7 6 4 9 9 C 1.50695 * 125.68916 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47005 * 95.00213 * 9 8 7 11 11 C 1.46903 * 110.99995 * 170.00383 * 10 9 8 12 12 C 1.50697 * 109.47206 * 288.75450 * 11 10 9 13 13 H 1.07999 * 119.99990 * 354.65535 * 12 11 10 14 14 C 1.37874 * 120.00432 * 174.66276 * 12 11 10 15 15 N 1.31518 * 119.99486 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00480 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46940 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47447 * 119.99801 * 16 14 12 19 19 H 1.48496 * 109.47291 * 239.99953 * 16 14 12 20 20 C 1.46906 * 111.00084 * 293.95248 * 10 9 8 21 21 C 1.50698 * 109.47160 * 164.05026 * 20 10 9 22 22 C 1.34518 * 125.78696 * 95.44733 * 21 20 10 23 23 C 1.41385 * 106.84223 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.83810 * 0.02562 * 23 22 21 25 25 O 1.34298 * 125.79358 * 275.48175 * 21 20 10 26 26 N 1.33637 * 108.62787 * 0.23181 * 8 7 6 27 27 C 1.32521 * 109.25497 * 359.61918 * 26 8 7 28 28 N 1.31223 * 119.81577 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46737 * 269.97233 * 1 2 3 30 30 H 1.09002 * 109.47193 * 29.97393 * 1 2 3 31 31 H 1.08996 * 109.46618 * 149.97492 * 1 2 3 32 32 H 1.08001 * 120.33508 * 0.02616 * 3 2 1 33 33 H 1.08999 * 109.47279 * 269.98649 * 5 4 3 34 34 H 1.08995 * 109.47270 * 29.98617 * 5 4 3 35 35 H 1.09001 * 109.47079 * 149.98717 * 5 4 3 36 36 H 1.07997 * 126.45500 * 0.02562 * 7 6 4 37 37 H 1.09006 * 109.47187 * 335.00415 * 9 8 7 38 38 H 1.08998 * 109.48026 * 215.00443 * 9 8 7 39 39 H 1.08998 * 109.47104 * 48.75417 * 11 10 9 40 40 H 1.09001 * 109.46910 * 168.74986 * 11 10 9 41 41 H 0.97002 * 119.99651 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.46800 * 44.05844 * 20 10 9 43 43 H 1.08995 * 109.47195 * 284.05679 * 20 10 9 44 44 H 1.08001 * 126.57939 * 0.06079 * 22 21 20 45 45 H 1.07995 * 126.57959 * 179.97438 * 23 22 21 46 46 H 1.07997 * 125.78714 * 180.26045 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2165 0.0000 4 6 3.5597 1.2051 -0.0005 5 6 4.3346 2.4976 0.0000 6 7 4.2128 0.0070 -0.0016 7 6 5.5398 -0.3273 -0.0028 8 6 5.6093 -1.6755 -0.0040 9 6 6.8770 -2.4904 -0.0061 10 7 7.2251 -2.8579 1.3729 11 6 8.3135 -3.8443 1.3960 12 6 7.7970 -5.1738 0.9096 13 1 6.7459 -5.2990 0.6950 14 6 8.6661 -6.2303 0.7384 15 7 9.9460 -6.0776 0.9993 16 14 8.0258 -7.8784 0.1361 17 1 6.5597 -7.7897 -0.0829 18 1 8.6968 -8.2338 -1.1400 19 1 8.3116 -8.9221 1.1530 20 6 7.5750 -1.6693 2.1622 21 6 7.5427 -2.0131 3.6291 22 6 8.6013 -2.3757 4.3756 23 6 8.1201 -2.6042 5.6852 24 6 6.7960 -2.3681 5.6605 25 8 6.4520 -2.0099 4.4127 26 7 4.3667 -2.1670 -0.0087 27 6 3.5001 -1.1645 -0.0022 28 7 2.1595 -1.1385 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6663 2.1532 0.0004 33 1 4.5212 2.8098 -1.0275 34 1 3.7582 3.2666 0.5144 35 1 5.2848 2.3513 0.5136 36 1 6.3742 0.3583 -0.0027 37 1 7.6858 -1.9030 -0.4408 38 1 6.7269 -3.3944 -0.5962 39 1 9.1218 -3.5088 0.7463 40 1 8.6863 -3.9500 2.4148 41 1 10.5576 -6.8209 0.8786 42 1 6.8573 -0.8744 1.9594 43 1 8.5755 -1.3338 1.8895 44 1 9.6230 -2.4730 4.0392 45 1 8.7034 -2.9104 6.5409 46 1 6.1245 -2.4479 6.5026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079014963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = 130.450707 kcal Electronic energy + Delta-G solvation = -29209.261709 eV Core-core repulsion = 25295.724794 eV Total energy + Delta-G solvation = -3913.536915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.96245 -41.99669 -38.77652 -36.72026 -35.44569 -32.63673 -32.52791 -32.02032 -30.83254 -30.21503 -28.80927 -28.18607 -26.85126 -25.85774 -23.84554 -22.94717 -21.83060 -21.31620 -20.95597 -20.14350 -19.57534 -18.18077 -17.52521 -16.78299 -16.52779 -16.25810 -15.59643 -15.28636 -14.92000 -14.48703 -14.27128 -14.09175 -13.94232 -13.92533 -13.83404 -13.50857 -13.34296 -13.03508 -12.84220 -12.49407 -12.41253 -12.30540 -12.13880 -11.98592 -11.62134 -11.40414 -11.28621 -11.16817 -10.94465 -10.54072 -10.52505 -10.23283 -9.86973 -9.61664 -9.37937 -9.17939 -8.87556 -8.35983 -8.01948 -7.88809 -7.32136 -5.95473 -3.95134 0.48288 1.04192 2.24098 2.38804 2.80392 3.13717 3.38914 3.46325 3.52907 3.53648 3.55426 3.66192 3.90004 4.29919 4.50047 4.52466 4.82256 4.90553 4.92734 4.99680 5.06774 5.21295 5.28174 5.29806 5.30727 5.36570 5.40797 5.49176 5.51939 5.54746 5.58775 5.74332 5.80491 5.84676 6.03376 6.20368 6.29802 6.41076 6.45051 6.59006 6.66963 6.78615 7.01297 7.23755 7.29276 7.66384 7.67949 7.88317 8.06118 8.16730 8.19708 8.55500 9.14758 9.69066 11.15184 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.003598 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.275708 B = 7780.079388 C = 9330.852751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.187 3.813 3 C -0.216 4.216 4 C 0.145 3.855 5 C -0.119 4.119 6 N -0.398 5.398 7 C -0.106 4.106 8 C 0.109 3.891 9 C 0.138 3.862 10 N -0.524 5.524 11 C 0.190 3.810 12 C -0.502 4.502 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.894 3.106 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.125 3.875 21 C 0.021 3.979 22 C -0.207 4.207 23 C -0.211 4.211 24 C -0.057 4.057 25 O -0.171 6.171 26 N -0.443 5.443 27 C 0.381 3.619 28 N -0.439 5.439 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.182 0.818 37 H 0.046 0.954 38 H 0.110 0.890 39 H -0.001 1.001 40 H 0.039 0.961 41 H 0.259 0.741 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 21.751 0.527 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.020 3.980 3 C -0.240 4.240 4 C 0.031 3.969 5 C -0.176 4.176 6 N -0.077 5.077 7 C -0.237 4.237 8 C -0.026 4.026 9 C 0.009 3.991 10 N -0.249 5.249 11 C 0.065 3.935 12 C -0.541 4.541 13 H 0.086 0.914 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.722 3.278 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.003 4.003 21 C -0.030 4.030 22 C -0.227 4.227 23 C -0.230 4.230 24 C -0.125 4.125 25 O -0.067 6.067 26 N -0.165 5.165 27 C 0.033 3.967 28 N -0.153 5.153 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.176 0.824 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.199 0.801 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.017 0.983 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.877 19.722 0.617 23.562 hybrid contribution 1.349 0.803 -0.309 1.600 sum -11.528 20.525 0.308 23.543 Atomic orbital electron populations 1.20735 0.87164 1.04113 1.03807 1.21671 0.97514 0.87028 0.91800 1.21349 0.91837 1.00732 1.10050 1.20789 0.92914 0.87014 0.96211 1.20997 1.00623 0.91701 1.04321 1.44002 1.08860 1.07756 1.47098 1.22356 0.83805 0.97878 1.19653 1.21196 0.93779 0.90080 0.97520 1.20392 0.88146 0.98713 0.91806 1.62004 1.43987 1.09459 1.09440 1.19888 0.86490 0.89313 0.97769 1.21233 0.95048 0.94679 1.43154 0.91433 1.24946 0.94766 0.98969 0.95788 1.69968 1.02527 1.31826 1.49748 0.86478 0.79367 0.83737 0.78173 1.19421 1.21169 1.21145 1.20501 0.99996 0.94481 0.85341 1.22299 0.83741 1.03666 0.93256 1.21557 1.00218 1.07395 0.93529 1.21724 0.95015 1.07749 0.98514 1.23832 0.96490 1.06095 0.86089 1.84009 1.35937 1.67684 1.19045 1.70749 0.98797 1.25768 1.21220 1.22043 0.89195 0.80572 1.04854 1.67654 1.02835 1.28793 1.16019 0.89572 0.90008 0.89752 0.82408 0.89107 0.88792 0.90049 0.80122 0.93633 0.87217 0.98313 0.94295 0.93125 0.90630 0.92295 0.83740 0.84043 0.78897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.19 36.01 0.37 -0.34 16 2 C 0.19 2.13 6.83 -82.11 -0.56 1.57 16 3 C -0.22 -1.92 9.38 -39.79 -0.37 -2.29 16 4 C 0.14 1.49 6.82 -81.49 -0.56 0.94 16 5 C -0.12 -0.69 9.90 36.01 0.36 -0.34 16 6 N -0.40 -5.84 2.95 -60.19 -0.18 -6.02 16 7 C -0.11 -1.56 9.61 -16.47 -0.16 -1.72 16 8 C 0.11 2.03 5.87 -82.96 -0.49 1.55 16 9 C 0.14 2.74 5.35 -4.98 -0.03 2.71 16 10 N -0.52 -11.62 4.39 -238.96 -1.05 -12.67 16 11 C 0.19 4.92 4.57 -4.98 -0.02 4.89 16 12 C -0.50 -14.49 8.36 -34.44 -0.29 -14.78 16 13 H 0.07 2.02 7.70 -52.49 -0.40 1.61 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 17 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 C 0.12 2.32 5.38 -4.97 -0.03 2.29 16 21 C 0.02 0.42 6.30 -35.62 -0.22 0.20 16 22 C -0.21 -3.90 9.57 -39.70 -0.38 -4.28 16 23 C -0.21 -3.52 10.91 -39.70 -0.43 -3.96 16 24 C -0.06 -0.93 12.09 29.42 0.36 -0.58 16 25 O -0.17 -3.37 10.65 5.72 0.06 -3.31 16 26 N -0.44 -9.46 11.31 -10.66 -0.12 -9.58 16 27 C 0.38 7.03 8.92 -322.53 -2.88 4.16 16 28 N -0.44 -7.28 10.40 -9.92 -0.10 -7.39 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.08 0.49 7.61 -51.93 -0.40 0.10 16 36 H 0.18 1.96 7.87 -52.49 -0.41 1.54 16 37 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 38 H 0.11 2.45 7.15 -51.93 -0.37 2.08 16 39 H 0.00 -0.03 8.06 -51.93 -0.42 -0.44 16 40 H 0.04 1.08 6.22 -51.93 -0.32 0.75 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.08 1.27 5.81 -51.93 -0.30 0.97 16 43 H 0.06 0.99 8.05 -51.93 -0.42 0.58 16 44 H 0.14 2.63 8.06 -52.49 -0.42 2.21 16 45 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 46 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -37.75 387.09 -11.67 -49.42 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.40 Total: 0.80 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -5.43 Total: -8.45 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.71 Total: -61.81 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: 0.06 Total: -3.31 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.75 -11.67 -49.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079014963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.873 kcal (2) G-P(sol) polarization free energy of solvation -37.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds