Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40205 * 119.80828 * 2 1 4 4 C 1.35576 * 119.32525 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.46007 * 180.02562 * 4 3 2 6 6 N 1.36453 * 119.07740 * 0.02562 * 4 3 2 7 7 C 1.36843 * 132.73436 * 179.97438 * 6 4 3 8 8 C 1.35000 * 107.09447 * 180.02562 * 7 6 4 9 9 C 1.50695 * 125.68916 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47005 * 95.00213 * 9 8 7 11 11 C 1.46903 * 110.99995 * 170.00383 * 10 9 8 12 12 C 1.50697 * 109.47206 * 288.75450 * 11 10 9 13 13 H 1.07999 * 119.99990 * 354.65535 * 12 11 10 14 14 C 1.37874 * 120.00432 * 174.66276 * 12 11 10 15 15 N 1.31518 * 119.99486 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00480 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46940 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47447 * 119.99801 * 16 14 12 19 19 H 1.48496 * 109.47291 * 239.99953 * 16 14 12 20 20 C 1.46906 * 111.00084 * 293.95248 * 10 9 8 21 21 C 1.50698 * 109.47160 * 164.05026 * 20 10 9 22 22 C 1.34518 * 125.78696 * 95.44733 * 21 20 10 23 23 C 1.41385 * 106.84223 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.83810 * 0.02562 * 23 22 21 25 25 O 1.34298 * 125.79358 * 275.48175 * 21 20 10 26 26 N 1.33637 * 108.62787 * 0.23181 * 8 7 6 27 27 C 1.32521 * 109.25497 * 359.61918 * 26 8 7 28 28 N 1.31223 * 119.81577 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46737 * 269.97233 * 1 2 3 30 30 H 1.09002 * 109.47193 * 29.97393 * 1 2 3 31 31 H 1.08996 * 109.46618 * 149.97492 * 1 2 3 32 32 H 1.08001 * 120.33508 * 0.02616 * 3 2 1 33 33 H 1.08999 * 109.47279 * 269.98649 * 5 4 3 34 34 H 1.08995 * 109.47270 * 29.98617 * 5 4 3 35 35 H 1.09001 * 109.47079 * 149.98717 * 5 4 3 36 36 H 1.07997 * 126.45500 * 0.02562 * 7 6 4 37 37 H 1.09006 * 109.47187 * 335.00415 * 9 8 7 38 38 H 1.08998 * 109.48026 * 215.00443 * 9 8 7 39 39 H 1.08998 * 109.47104 * 48.75417 * 11 10 9 40 40 H 1.09001 * 109.46910 * 168.74986 * 11 10 9 41 41 H 0.97002 * 119.99651 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.46800 * 44.05844 * 20 10 9 43 43 H 1.08995 * 109.47195 * 284.05679 * 20 10 9 44 44 H 1.08001 * 126.57939 * 0.06079 * 22 21 20 45 45 H 1.07995 * 126.57959 * 179.97438 * 23 22 21 46 46 H 1.07997 * 125.78714 * 180.26045 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2165 0.0000 4 6 3.5597 1.2051 -0.0005 5 6 4.3346 2.4976 0.0000 6 7 4.2128 0.0070 -0.0016 7 6 5.5398 -0.3273 -0.0028 8 6 5.6093 -1.6755 -0.0040 9 6 6.8770 -2.4904 -0.0061 10 7 7.2251 -2.8579 1.3729 11 6 8.3135 -3.8443 1.3960 12 6 7.7970 -5.1738 0.9096 13 1 6.7459 -5.2990 0.6950 14 6 8.6661 -6.2303 0.7384 15 7 9.9460 -6.0776 0.9993 16 14 8.0258 -7.8784 0.1361 17 1 6.5597 -7.7897 -0.0829 18 1 8.6968 -8.2338 -1.1400 19 1 8.3116 -8.9221 1.1530 20 6 7.5750 -1.6693 2.1622 21 6 7.5427 -2.0131 3.6291 22 6 8.6013 -2.3757 4.3756 23 6 8.1201 -2.6042 5.6852 24 6 6.7960 -2.3681 5.6605 25 8 6.4520 -2.0099 4.4127 26 7 4.3667 -2.1670 -0.0087 27 6 3.5001 -1.1645 -0.0022 28 7 2.1595 -1.1385 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6663 2.1532 0.0004 33 1 4.5212 2.8098 -1.0275 34 1 3.7582 3.2666 0.5144 35 1 5.2848 2.3513 0.5136 36 1 6.3742 0.3583 -0.0027 37 1 7.6858 -1.9030 -0.4408 38 1 6.7269 -3.3944 -0.5962 39 1 9.1218 -3.5088 0.7463 40 1 8.6863 -3.9500 2.4148 41 1 10.5576 -6.8209 0.8786 42 1 6.8573 -0.8744 1.9594 43 1 8.5755 -1.3338 1.8895 44 1 9.6230 -2.4730 4.0392 45 1 8.7034 -2.9104 6.5409 46 1 6.1245 -2.4479 6.5026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079014963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = 106.639402 kcal Electronic energy + Delta-G solvation = -29210.294245 eV Core-core repulsion = 25295.724794 eV Total energy + Delta-G solvation = -3914.569451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.04951 -43.40024 -39.84966 -38.31166 -36.37882 -34.77277 -33.90955 -33.13217 -31.73047 -31.63865 -30.26091 -28.95708 -28.45827 -27.10624 -25.62200 -24.05735 -23.11379 -22.57385 -22.39405 -21.44478 -21.00927 -19.16925 -18.66381 -18.47655 -18.11850 -17.52294 -17.07641 -16.78128 -16.23990 -15.92286 -15.69528 -15.52093 -15.09557 -14.83230 -14.62354 -14.57070 -14.32259 -14.04099 -13.97039 -13.84920 -13.70478 -13.48925 -13.37115 -13.23796 -13.04673 -12.87956 -12.71937 -12.56145 -12.50545 -12.35756 -12.22510 -11.89832 -11.35668 -11.30646 -10.79138 -10.72862 -10.58572 -9.93104 -9.38616 -9.10342 -9.01515 -8.19651 -6.26896 -0.37767 0.06538 0.83956 1.36195 1.37419 1.41089 1.52272 1.64323 1.77969 2.20720 2.40573 2.52445 2.58185 3.12355 3.20904 3.37181 3.50712 3.60477 3.88632 4.01180 4.11425 4.15501 4.17750 4.28254 4.35487 4.36494 4.43178 4.50351 4.59666 4.64965 4.66844 4.78463 4.81415 4.88981 4.96007 4.97443 5.03930 5.16068 5.17568 5.22281 5.29726 5.38183 5.48977 5.64278 5.68561 5.78007 6.07047 6.22980 6.33082 6.56080 6.62283 6.87673 7.05989 7.41342 8.90380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.003598 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.275708 B = 7780.079388 C = 9330.852751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.194 3.806 3 C -0.207 4.207 4 C 0.135 3.865 5 C -0.116 4.116 6 N -0.402 5.402 7 C -0.082 4.082 8 C 0.071 3.929 9 C 0.147 3.853 10 N -0.542 5.542 11 C 0.211 3.789 12 C -0.520 4.520 13 H 0.045 0.955 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.272 1.272 19 H -0.276 1.276 20 C 0.130 3.870 21 C -0.008 4.008 22 C -0.219 4.219 23 C -0.222 4.222 24 C -0.051 4.051 25 O -0.194 6.194 26 N -0.517 5.517 27 C 0.364 3.636 28 N -0.501 5.501 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.222 0.778 37 H 0.070 0.930 38 H 0.068 0.932 39 H -0.018 1.018 40 H 0.018 0.982 41 H 0.264 0.736 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.169 0.831 46 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.637 25.306 1.080 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.029 3.971 3 C -0.229 4.229 4 C 0.023 3.977 5 C -0.172 4.172 6 N -0.080 5.080 7 C -0.213 4.213 8 C -0.061 4.061 9 C 0.019 3.981 10 N -0.267 5.267 11 C 0.085 3.915 12 C -0.559 4.559 13 H 0.063 0.937 14 C -0.187 4.187 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.197 1.197 19 H -0.202 1.202 20 C 0.003 3.997 21 C -0.058 4.058 22 C -0.239 4.239 23 C -0.241 4.241 24 C -0.118 4.118 25 O -0.090 6.090 26 N -0.241 5.241 27 C 0.014 3.986 28 N -0.217 5.217 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.127 0.873 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.238 0.762 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.000 1.000 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.160 0.840 45 H 0.187 0.813 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.561 23.324 1.165 27.521 hybrid contribution 1.655 -0.138 -0.440 1.718 sum -12.907 23.186 0.725 26.546 Atomic orbital electron populations 1.20958 0.84110 1.05580 1.05093 1.22669 0.99518 0.86912 0.88023 1.22010 0.91479 1.01777 1.07660 1.21835 0.94078 0.87013 0.94807 1.21204 1.00483 0.89675 1.05886 1.44093 1.08429 1.08520 1.46995 1.22664 0.84943 0.96752 1.16941 1.20894 0.92477 0.91677 1.01088 1.20159 0.90127 0.97709 0.90103 1.61802 1.42532 1.11014 1.11378 1.19435 0.86954 0.89452 0.95632 1.21411 0.94115 0.96648 1.43687 0.93656 1.25681 0.94986 1.02229 0.95779 1.70048 1.03362 1.33002 1.50281 0.85525 0.78284 0.79677 0.78313 1.20208 1.19681 1.20160 1.20524 1.01267 0.93325 0.84586 1.22489 0.84131 1.05383 0.93809 1.21785 1.00104 1.07153 0.94858 1.22089 0.95622 1.07916 0.98459 1.24741 0.97270 1.03935 0.85824 1.83997 1.36342 1.68291 1.20396 1.70515 1.00456 1.28795 1.24323 1.22025 0.89958 0.81378 1.05203 1.67723 1.02308 1.31689 1.20014 0.88084 0.85837 0.90966 0.76900 0.87304 0.85470 0.90120 0.76190 0.91224 0.91327 1.00029 0.96374 0.92660 0.88879 0.90729 0.84016 0.81303 0.74632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.19 71.24 0.73 -0.38 16 2 C 0.19 4.03 6.83 43.13 0.29 4.32 16 3 C -0.21 -2.81 9.38 22.13 0.21 -2.60 16 4 C 0.13 2.34 6.82 41.22 0.28 2.62 16 5 C -0.12 -0.78 9.90 71.24 0.71 -0.07 16 6 N -0.40 -11.47 2.95 -344.34 -1.01 -12.49 16 7 C -0.08 -2.38 9.61 83.17 0.80 -1.58 16 8 C 0.07 2.81 5.87 41.54 0.24 3.05 16 9 C 0.15 6.28 5.35 85.56 0.46 6.74 16 10 N -0.54 -25.50 4.39 -909.94 -4.00 -29.50 16 11 C 0.21 11.59 4.57 85.56 0.39 11.98 16 12 C -0.52 -31.76 8.36 25.60 0.21 -31.54 16 13 H 0.05 2.91 7.70 -2.91 -0.02 2.89 16 14 C 0.01 0.70 5.46 84.65 0.46 1.16 16 15 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 16 Si 0.96 47.75 29.54 68.60 2.03 49.77 16 17 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 18 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 C 0.13 4.98 5.38 85.56 0.46 5.44 16 21 C -0.01 -0.31 6.30 24.83 0.16 -0.15 16 22 C -0.22 -8.40 9.57 22.19 0.21 -8.19 16 23 C -0.22 -7.24 10.91 22.19 0.24 -7.00 16 24 C -0.05 -1.59 12.09 66.97 0.81 -0.78 16 25 O -0.19 -7.68 10.65 -2.47 -0.03 -7.70 16 26 N -0.52 -23.75 11.31 -187.65 -2.12 -25.87 16 27 C 0.36 13.94 8.92 261.39 2.33 16.27 16 28 N -0.50 -17.01 10.40 -185.31 -1.93 -18.94 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 0.35 8.09 -2.39 -0.02 0.33 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.13 0.07 8.09 -2.39 -0.02 0.05 16 35 H 0.08 0.62 7.61 -2.39 -0.02 0.60 16 36 H 0.22 4.26 7.87 -2.91 -0.02 4.23 16 37 H 0.07 2.52 8.12 -2.38 -0.02 2.50 16 38 H 0.07 3.41 7.15 -2.39 -0.02 3.39 16 39 H -0.02 -1.03 8.06 -2.39 -0.02 -1.04 16 40 H 0.02 1.06 6.22 -2.39 -0.01 1.05 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.09 3.16 5.81 -2.39 -0.01 3.15 16 43 H 0.07 2.56 8.05 -2.39 -0.02 2.55 16 44 H 0.14 5.37 8.06 -2.91 -0.02 5.34 16 45 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 46 H 0.24 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -91.81 387.09 3.21 -88.60 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.99 Total: 13.30 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 8.99 Total: -0.71 kcal Atomic # 7 Polarization: -134.49 SS G_CDS: -8.78 Total: -143.26 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.03 Total: -7.70 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -91.81 3.21 -88.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079014963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.237 kcal (2) G-P(sol) polarization free energy of solvation -91.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds