Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.46590 * 2 1 4 4 C 1.34231 * 116.99652 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00422 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99841 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.46837 * 179.97438 * 6 4 3 8 8 C 1.33408 * 122.71614 * 124.97690 * 7 6 4 9 9 S 1.76177 * 108.07099 * 180.02562 * 8 7 6 10 10 C 1.70966 * 90.34023 * 359.97438 * 9 8 7 11 11 N 1.39010 * 124.94470 * 180.02562 * 10 9 8 12 12 C 1.34770 * 120.00021 * 359.97438 * 11 10 9 13 13 O 1.21592 * 119.99879 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00290 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99716 * 0.02562 * 14 12 11 16 16 C 1.46505 * 120.00029 * 179.97438 * 14 12 11 17 17 H 1.08997 * 109.47307 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47060 * 240.00120 * 16 14 12 19 19 C 1.50704 * 109.46413 * 120.00384 * 16 14 12 20 20 H 1.08001 * 120.00519 * 5.45881 * 19 16 14 21 21 C 1.37881 * 119.99228 * 185.45406 * 19 16 14 22 22 N 1.31517 * 120.00486 * 9.62272 * 21 19 16 23 23 Si 1.86801 * 119.99484 * 189.61775 * 21 19 16 24 24 H 1.48503 * 109.47143 * 85.00154 * 23 21 19 25 25 H 1.48503 * 109.46821 * 204.99602 * 23 21 19 26 26 H 1.48496 * 109.47575 * 324.99815 * 23 21 19 27 27 N 1.29625 * 110.11515 * 0.02562 * 10 9 8 28 28 H 1.09004 * 109.46779 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47582 * 299.99986 * 1 2 3 30 30 H 1.08999 * 109.47064 * 60.00278 * 1 2 3 31 31 H 1.09001 * 109.46915 * 239.99778 * 2 1 3 32 32 H 1.08999 * 109.47064 * 119.99722 * 2 1 3 33 33 H 1.08992 * 109.47151 * 59.99817 * 6 4 3 34 34 H 1.08998 * 109.46926 * 299.99552 * 6 4 3 35 35 H 1.07998 * 125.96552 * 0.02562 * 8 7 6 36 36 H 0.97001 * 119.99742 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.47369 * 89.99977 * 15 14 12 38 38 H 1.09005 * 109.47066 * 209.99630 * 15 14 12 39 39 H 1.08995 * 109.47433 * 329.99432 * 15 14 12 40 40 H 1.08998 * 109.47096 * 303.29024 * 18 16 14 41 41 H 1.08998 * 109.46926 * 63.29059 * 18 16 14 42 42 H 1.09006 * 109.46911 * 183.28819 * 18 16 14 43 43 H 0.96997 * 119.99860 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4255 2.8587 -0.0010 8 6 6.1793 3.4631 -0.9210 9 16 7.8681 3.1185 -0.5562 10 6 7.3965 2.1932 0.8019 11 7 8.2710 1.5435 1.6653 12 6 9.6008 1.6175 1.4590 13 8 10.0355 2.2522 0.5174 14 7 10.4488 0.9881 2.2963 15 6 9.9249 0.2229 3.4305 16 6 11.8943 1.0680 2.0716 17 1 12.0916 1.6749 1.1880 18 6 12.4562 -0.3392 1.8604 19 6 12.5548 1.6980 3.2709 20 1 11.9715 1.9269 4.1506 21 6 13.9038 1.9819 3.2449 22 7 14.5753 1.8818 2.1186 23 14 14.7775 2.5089 4.8096 24 1 15.1905 1.3053 5.5753 25 1 15.9784 3.3094 4.4603 26 1 13.8583 3.3307 5.6372 27 7 6.1047 2.1857 0.9095 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5849 3.4699 0.8887 34 1 3.5843 3.4693 -0.8912 35 1 5.8174 4.0595 -1.7454 36 1 7.9242 1.0369 2.4163 37 1 9.7510 -0.8084 3.1237 38 1 10.6474 0.2423 4.2465 39 1 8.9869 0.6656 3.7652 40 1 12.2080 -0.9623 2.7196 41 1 12.0215 -0.7725 0.9597 42 1 13.5394 -0.2853 1.7514 43 1 15.5243 2.0820 2.1003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079021041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -56.323700 kcal Electronic energy + Delta-G solvation = -26891.608789 eV Core-core repulsion = 22871.864923 eV Total energy + Delta-G solvation = -4019.743867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74408 -40.21480 -39.19665 -36.69908 -35.85542 -34.70583 -32.91451 -32.27985 -31.31390 -29.49237 -28.17594 -26.42272 -25.27337 -24.54075 -23.54152 -21.92938 -21.31908 -20.46681 -19.06161 -17.96769 -17.71014 -17.35821 -16.96115 -16.66665 -16.23361 -16.03014 -15.42823 -15.29561 -14.58538 -14.46322 -14.12407 -14.05463 -13.46637 -13.31607 -13.13380 -12.95154 -12.83518 -12.63729 -12.62418 -12.03741 -11.87345 -11.83587 -11.75019 -11.30885 -11.06708 -10.98941 -10.77937 -10.75120 -10.69189 -10.45517 -10.37177 -10.23263 -9.57246 -9.45549 -9.31947 -8.91314 -8.47787 -8.18200 -7.68603 -6.15945 -4.21303 1.02001 1.44020 2.08512 2.16348 2.39959 2.73168 2.98315 3.23436 3.30826 3.32553 3.62367 4.15430 4.33992 4.42244 4.61725 4.63006 4.75060 4.86524 4.96977 5.15582 5.16643 5.33944 5.40097 5.44226 5.47347 5.62398 5.63199 5.84313 5.97139 6.14306 6.29437 6.42412 6.51714 6.63645 6.77065 6.92144 7.23734 7.52233 7.57430 7.69553 7.84186 7.95835 8.08019 8.37579 8.72443 8.88596 9.43660 10.91388 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002281 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.192081 B =12275.028752 C =12826.215277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.483 6.483 6 C -0.030 4.030 7 C 0.095 3.905 8 C -0.331 4.331 9 S 0.264 5.736 10 C 0.280 3.720 11 N -0.642 5.642 12 C 0.694 3.306 13 O -0.561 6.561 14 N -0.590 5.590 15 C 0.078 3.922 16 C 0.269 3.731 17 H 0.075 0.925 18 C -0.142 4.142 19 C -0.533 4.533 20 H 0.061 0.939 21 C 0.068 3.932 22 N -0.882 5.882 23 Si 0.897 3.103 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.275 1.275 27 N -0.513 5.513 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.172 0.828 36 H 0.415 0.585 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.018 0.982 42 H 0.079 0.921 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.649 -0.741 -3.824 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.368 6.368 6 C -0.071 4.071 7 C -0.039 4.039 8 C -0.473 4.473 9 S 0.515 5.485 10 C -0.089 4.089 11 N -0.296 5.296 12 C 0.395 3.605 13 O -0.438 6.438 14 N -0.324 5.324 15 C -0.066 4.066 16 C 0.170 3.830 17 H 0.092 0.908 18 C -0.200 4.200 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.135 4.135 22 N -0.519 5.519 23 Si 0.725 3.275 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.200 1.200 27 N -0.236 5.236 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.189 0.811 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.098 0.902 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.983 -0.705 -4.498 22.450 hybrid contribution -0.629 -0.291 1.490 1.644 sum -22.612 -0.996 -3.007 22.833 Atomic orbital electron populations 1.21803 0.92701 1.02919 1.03451 1.22985 0.95186 0.80344 1.02643 1.86478 1.24771 1.32331 1.84656 1.23476 0.80344 0.92739 0.73238 1.90725 1.60120 1.42741 1.43242 1.19778 0.89043 0.91755 1.06485 1.18811 0.94702 0.97860 0.92524 1.27225 1.00183 1.12647 1.07202 1.85240 1.00372 1.43152 1.19749 1.23099 0.90017 0.99023 0.96716 1.42250 1.04467 1.52814 1.30036 1.15927 0.79228 0.81428 0.83929 1.90810 1.74296 1.46641 1.32086 1.47599 1.08434 1.50292 1.26036 1.21674 0.99120 0.94950 0.90893 1.19039 0.70448 0.94194 0.99344 0.90752 1.22040 1.03070 0.97535 0.97396 1.21235 0.93743 1.42000 1.00222 0.92090 1.24893 0.97417 0.94942 0.96272 1.69965 1.09087 1.47994 1.24810 0.86534 0.79188 0.78578 0.83247 1.20443 1.21140 1.19977 1.65998 1.03302 1.24594 1.29722 0.90318 0.91476 0.91525 0.91349 0.91246 0.86339 0.86199 0.81059 0.74528 0.93226 0.89101 0.93154 0.94784 0.96337 0.90244 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.75 10.22 -39.26 -0.40 -4.15 16 4 C 0.46 5.62 7.92 36.01 0.29 5.91 16 5 O -0.48 -7.79 15.20 -18.75 -0.28 -8.07 16 6 C -0.03 -0.30 6.30 -29.03 -0.18 -0.48 16 7 C 0.09 1.30 5.63 -84.20 -0.47 0.83 16 8 C -0.33 -4.24 11.05 29.04 0.32 -3.91 16 9 S 0.26 4.28 20.21 -107.50 -2.17 2.11 16 10 C 0.28 4.90 8.19 -87.34 -0.72 4.19 16 11 N -0.64 -11.22 5.27 -17.47 -0.09 -11.31 16 12 C 0.69 14.40 8.24 -86.93 -0.72 13.68 16 13 O -0.56 -13.17 13.13 5.28 0.07 -13.11 16 14 N -0.59 -12.20 2.75 -181.01 -0.50 -12.70 16 15 C 0.08 1.24 9.12 59.84 0.55 1.78 16 16 C 0.27 6.60 2.50 -69.08 -0.17 6.43 16 17 H 0.07 2.12 6.84 -51.93 -0.36 1.77 16 18 C -0.14 -3.21 9.12 37.16 0.34 -2.87 16 19 C -0.53 -13.88 8.01 -34.44 -0.28 -14.15 16 20 H 0.06 1.56 7.16 -52.49 -0.38 1.18 16 21 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 22 N -0.88 -24.51 12.17 55.43 0.67 -23.84 16 23 Si 0.90 20.49 29.55 -169.99 -5.02 15.47 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 N -0.51 -8.49 9.73 -11.27 -0.11 -8.60 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.12 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.42 6.23 6.55 -40.82 -0.27 5.97 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.51 6.92 -51.93 -0.36 1.15 16 39 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 40 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.96 6.84 -51.93 -0.36 1.61 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -33.11 375.04 -8.50 -41.61 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.79 Total: 3.50 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.53 Total: 13.43 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.03 Total: -56.44 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.62 Total: -25.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.17 Total: 2.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.11 -8.50 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079021041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.709 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds