Wall clock time and date at job start Tue Mar 31 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38295 * 119.96759 * 2 1 4 4 C 1.38260 * 120.14496 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.06482 * 359.70019 * 4 3 2 6 6 C 1.38844 * 119.93037 * 0.57594 * 5 4 3 7 7 N 1.39944 * 120.07179 * 179.72610 * 6 5 4 8 8 C 1.34777 * 119.99553 * 335.17300 * 7 6 5 9 9 O 1.21580 * 120.00593 * 354.35306 * 8 7 6 10 10 N 1.34785 * 119.99722 * 174.62188 * 8 7 6 11 11 C 1.46494 * 119.99715 * 359.72922 * 10 8 7 12 12 C 1.50700 * 109.47284 * 90.00290 * 11 10 8 13 13 H 1.07994 * 119.99613 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99774 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00614 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99772 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47495 * 59.99540 * 16 14 12 18 18 H 1.48495 * 109.47106 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46968 * 299.99472 * 16 14 12 20 20 C 1.46494 * 120.00090 * 179.73129 * 10 8 7 21 21 C 1.50690 * 109.47412 * 89.99641 * 20 10 8 22 22 C 1.38227 * 119.61680 * 95.00121 * 21 20 10 23 23 C 1.38631 * 119.16270 * 179.97438 * 22 21 20 24 24 C 1.38681 * 118.42043 * 359.97438 * 23 22 21 25 25 C 1.38177 * 119.16168 * 359.97438 * 24 23 22 26 26 N 1.31855 * 119.62154 * 274.72551 * 21 20 10 27 27 C 1.38090 * 119.96446 * 180.02562 * 2 1 3 28 28 C 1.50707 * 120.03576 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47302 * 269.97335 * 1 2 3 30 30 H 1.09001 * 109.47155 * 29.97480 * 1 2 3 31 31 H 1.09003 * 109.47375 * 149.97379 * 1 2 3 32 32 H 1.08005 * 119.93004 * 0.02562 * 3 2 1 33 33 H 1.07991 * 119.96694 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.03704 * 180.29920 * 5 4 3 35 35 H 0.96995 * 120.00064 * 155.18495 * 7 6 5 36 36 H 1.09001 * 109.47270 * 210.00017 * 11 10 8 37 37 H 1.09000 * 109.47732 * 329.99486 * 11 10 8 38 38 H 0.96997 * 120.00261 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.47214 * 210.00167 * 20 10 8 40 40 H 1.09008 * 109.46829 * 329.99495 * 20 10 8 41 41 H 1.07996 * 120.42403 * 359.95710 * 22 21 20 42 42 H 1.07998 * 120.79239 * 180.02562 * 23 22 21 43 43 H 1.07993 * 120.41782 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.61719 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.46653 * 269.98054 * 28 27 2 46 46 H 1.08997 * 109.46838 * 29.97546 * 28 27 2 47 47 H 1.08991 * 109.47233 * 149.97858 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2023 -0.0005 5 6 4.2761 0.0090 0.0052 6 6 3.5856 -1.1955 -0.0006 7 7 4.2875 -2.4062 -0.0006 8 6 5.5439 -2.4566 -0.4856 9 8 6.0306 -1.4770 -1.0163 10 7 6.2591 -3.5949 -0.3872 11 6 5.6727 -4.7753 0.2522 12 6 4.9635 -5.6080 -0.7844 13 1 4.9505 -5.2895 -1.8163 14 6 4.3305 -6.7759 -0.4153 15 7 4.3459 -7.1635 0.8414 16 14 3.4507 -7.8078 -1.7002 17 1 4.4211 -8.2384 -2.7385 18 1 2.8565 -9.0043 -1.0520 19 1 2.3756 -7.0010 -2.3315 20 6 7.6227 -3.6515 -0.9196 21 6 8.5984 -3.2430 0.1536 22 6 9.2103 -4.2128 0.9256 23 6 10.1068 -3.8264 1.9099 24 6 10.3558 -2.4730 2.0815 25 6 9.7072 -1.5610 1.2710 26 7 8.8628 -1.9651 0.3419 27 6 2.1967 -1.1963 -0.0005 28 6 1.4432 -2.5015 -0.0017 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6561 2.1324 0.0004 33 1 4.1169 2.1395 -0.0010 34 1 5.3561 0.0129 0.0096 35 1 3.8696 -3.2091 0.3482 36 1 6.4620 -5.3672 0.7158 37 1 4.9603 -4.4596 1.0143 38 1 3.9008 -7.9853 1.1010 39 1 7.8441 -4.6682 -1.2441 40 1 7.7101 -2.9724 -1.7678 41 1 8.9926 -5.2582 0.7642 42 1 10.6001 -4.5620 2.5279 43 1 11.0486 -2.1362 2.8384 44 1 9.8954 -0.5052 1.3985 45 1 1.2614 -2.8169 1.0257 46 1 0.4908 -2.3707 -0.5154 47 1 2.0322 -3.2606 -0.5161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079067548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:35 Heat of formation + Delta-G solvation = 36.378050 kcal Electronic energy + Delta-G solvation = -29469.666079 eV Core-core repulsion = 25617.475778 eV Total energy + Delta-G solvation = -3852.190301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39060 -39.81137 -38.51369 -35.36432 -34.43254 -33.00098 -32.85499 -32.19284 -31.50081 -30.08976 -27.70457 -27.15375 -26.11674 -25.76969 -23.40088 -22.98000 -22.33580 -21.13176 -20.74879 -18.93526 -17.72319 -16.92063 -16.52796 -16.24782 -15.86732 -15.57577 -15.35026 -15.12251 -14.87980 -14.61333 -14.20149 -13.93488 -13.54344 -13.24469 -13.16588 -12.93987 -12.82318 -12.67283 -12.55002 -12.40607 -12.32606 -11.82318 -11.70758 -11.57868 -11.45785 -11.36104 -11.04212 -11.01616 -10.77469 -10.65509 -10.28969 -9.95096 -9.80514 -9.65038 -9.21562 -9.12529 -8.80124 -8.65623 -8.18022 -7.89971 -7.36817 -6.27980 -4.37327 1.28846 1.51918 1.73137 1.78862 3.18735 3.24227 3.26120 3.33771 3.75779 4.08790 4.23020 4.29939 4.61664 4.70658 4.98633 5.03421 5.04782 5.06436 5.16130 5.25169 5.33307 5.36607 5.44060 5.61668 5.67034 5.74685 5.78649 5.82901 5.93861 5.98726 6.02525 6.07854 6.15306 6.21839 6.29268 6.35408 6.39059 6.52402 6.59460 6.74268 6.90028 6.91868 6.96631 7.01531 7.06775 7.33265 7.57282 7.67175 7.72533 7.92959 8.32074 8.52276 8.75929 9.25026 9.34109 10.77808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007004 B = 0.005157 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3996.542272 B = 5428.356481 C = 8815.662824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.153 4.153 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.189 3.811 7 N -0.678 5.678 8 C 0.708 3.292 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.239 3.761 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.185 3.815 21 C 0.119 3.881 22 C -0.156 4.156 23 C -0.081 4.081 24 C -0.182 4.182 25 C 0.092 3.908 26 N -0.456 5.456 27 C -0.126 4.126 28 C -0.119 4.119 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.418 0.582 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 9.008 2.805 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.172 4.172 4 C -0.122 4.122 5 C -0.159 4.159 6 C 0.092 3.908 7 N -0.326 5.326 8 C 0.410 3.590 9 O -0.459 6.459 10 N -0.338 5.338 11 C 0.119 3.881 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.060 3.940 21 C -0.021 4.021 22 C -0.176 4.176 23 C -0.107 4.107 24 C -0.202 4.202 25 C -0.066 4.066 26 N -0.165 5.165 27 C -0.129 4.129 28 C -0.175 4.175 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.167 0.833 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.941 10.040 2.027 10.425 hybrid contribution -0.187 -1.828 0.300 1.861 sum 1.755 8.212 2.327 8.714 Atomic orbital electron populations 1.20805 0.91622 1.02485 1.01985 1.19412 0.95422 0.92087 1.00253 1.20809 0.94231 0.96871 1.05337 1.20933 0.93885 0.97512 0.99911 1.21493 1.02044 0.90445 1.01918 1.17488 0.89937 0.85688 0.97708 1.42962 1.14528 1.10855 1.64225 1.15798 0.80491 0.83702 0.78991 1.90823 1.70772 1.34978 1.49376 1.47301 1.12784 1.12283 1.61480 1.19373 0.94157 0.81665 0.92927 1.21498 1.34578 1.06964 0.95220 0.91852 1.24942 0.95936 0.97240 0.95467 1.69911 1.43159 1.23707 1.15922 0.86567 0.80022 0.79564 0.81435 1.20042 1.21144 1.20001 1.20015 0.78771 1.02243 0.92949 1.21944 0.94960 0.88544 0.96621 1.22123 0.97534 1.01443 0.96519 1.21544 0.96423 0.96103 0.96674 1.22090 1.02259 0.94289 1.01547 1.22765 0.92465 0.99992 0.91380 1.67656 1.13047 1.17978 1.17838 1.19412 0.91558 0.95611 1.06322 1.20796 1.00094 0.94328 1.02315 0.91477 0.91979 0.91275 0.86830 0.86467 0.83385 0.74222 0.94230 0.95298 0.92339 0.88571 0.88934 0.84483 0.85167 0.85374 0.83315 0.91372 0.91238 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.60 36.00 0.35 -0.91 16 2 C -0.07 -1.04 5.88 -104.66 -0.62 -1.65 16 3 C -0.15 -2.17 9.70 -39.55 -0.38 -2.55 16 4 C -0.10 -1.60 10.04 -39.61 -0.40 -2.00 16 5 C -0.14 -2.56 8.72 -39.39 -0.34 -2.90 16 6 C 0.19 3.58 6.41 -83.69 -0.54 3.04 16 7 N -0.68 -13.74 4.81 -14.22 -0.07 -13.81 16 8 C 0.71 15.43 8.08 -86.91 -0.70 14.72 16 9 O -0.58 -13.47 13.09 5.29 0.07 -13.40 16 10 N -0.60 -12.68 2.44 -182.20 -0.44 -13.12 16 11 C 0.24 5.43 4.87 -5.20 -0.03 5.40 16 12 C -0.54 -13.40 9.39 -34.44 -0.32 -13.73 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 16 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.19 3.45 5.71 -5.20 -0.03 3.42 16 21 C 0.12 2.08 6.36 -82.59 -0.53 1.55 16 22 C -0.16 -2.37 9.72 -39.44 -0.38 -2.75 16 23 C -0.08 -1.05 10.18 -39.27 -0.40 -1.45 16 24 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 25 C 0.09 1.32 11.18 -17.55 -0.20 1.13 16 26 N -0.46 -8.18 10.27 -9.48 -0.10 -8.27 16 27 C -0.13 -2.09 5.90 -104.43 -0.62 -2.70 16 28 C -0.12 -1.80 9.04 36.01 0.33 -1.47 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.07 0.74 5.94 -51.93 -0.31 0.43 16 32 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.15 3.03 5.79 -52.48 -0.30 2.73 16 35 H 0.42 8.50 5.21 -40.82 -0.21 8.28 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.03 0.69 6.46 -51.93 -0.34 0.36 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 39 H 0.10 1.65 7.97 -51.93 -0.41 1.23 16 40 H 0.09 1.79 7.42 -51.92 -0.39 1.40 16 41 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.90 5.94 -51.93 -0.31 0.59 16 47 H 0.07 1.23 6.98 -51.93 -0.36 0.87 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -29.51 389.74 -10.65 -40.16 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -6.40 Total: 14.21 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -5.30 Total: -3.89 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.13 Total: -57.73 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.07 Total: -13.40 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.51 -10.65 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079067548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.536 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds