Wall clock time and date at job start Tue Mar 31 2020 04:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38295 * 119.96759 * 2 1 4 4 C 1.38260 * 120.14496 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.06482 * 359.70019 * 4 3 2 6 6 C 1.38844 * 119.93037 * 0.57594 * 5 4 3 7 7 N 1.39944 * 120.07179 * 179.72610 * 6 5 4 8 8 C 1.34777 * 119.99553 * 335.17300 * 7 6 5 9 9 O 1.21580 * 120.00593 * 354.35306 * 8 7 6 10 10 N 1.34785 * 119.99722 * 174.62188 * 8 7 6 11 11 C 1.46494 * 119.99715 * 359.72922 * 10 8 7 12 12 C 1.50700 * 109.47284 * 90.00290 * 11 10 8 13 13 H 1.07994 * 119.99613 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99774 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00614 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99772 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47495 * 59.99540 * 16 14 12 18 18 H 1.48495 * 109.47106 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46968 * 299.99472 * 16 14 12 20 20 C 1.46494 * 120.00090 * 179.73129 * 10 8 7 21 21 C 1.50690 * 109.47412 * 89.99641 * 20 10 8 22 22 C 1.38227 * 119.61680 * 95.00121 * 21 20 10 23 23 C 1.38631 * 119.16270 * 179.97438 * 22 21 20 24 24 C 1.38681 * 118.42043 * 359.97438 * 23 22 21 25 25 C 1.38177 * 119.16168 * 359.97438 * 24 23 22 26 26 N 1.31855 * 119.62154 * 274.72551 * 21 20 10 27 27 C 1.38090 * 119.96446 * 180.02562 * 2 1 3 28 28 C 1.50707 * 120.03576 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47302 * 269.97335 * 1 2 3 30 30 H 1.09001 * 109.47155 * 29.97480 * 1 2 3 31 31 H 1.09003 * 109.47375 * 149.97379 * 1 2 3 32 32 H 1.08005 * 119.93004 * 0.02562 * 3 2 1 33 33 H 1.07991 * 119.96694 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.03704 * 180.29920 * 5 4 3 35 35 H 0.96995 * 120.00064 * 155.18495 * 7 6 5 36 36 H 1.09001 * 109.47270 * 210.00017 * 11 10 8 37 37 H 1.09000 * 109.47732 * 329.99486 * 11 10 8 38 38 H 0.96997 * 120.00261 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.47214 * 210.00167 * 20 10 8 40 40 H 1.09008 * 109.46829 * 329.99495 * 20 10 8 41 41 H 1.07996 * 120.42403 * 359.95710 * 22 21 20 42 42 H 1.07998 * 120.79239 * 180.02562 * 23 22 21 43 43 H 1.07993 * 120.41782 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.61719 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.46653 * 269.98054 * 28 27 2 46 46 H 1.08997 * 109.46838 * 29.97546 * 28 27 2 47 47 H 1.08991 * 109.47233 * 149.97858 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2023 -0.0005 5 6 4.2761 0.0090 0.0052 6 6 3.5856 -1.1955 -0.0006 7 7 4.2875 -2.4062 -0.0006 8 6 5.5439 -2.4566 -0.4856 9 8 6.0306 -1.4770 -1.0163 10 7 6.2591 -3.5949 -0.3872 11 6 5.6727 -4.7753 0.2522 12 6 4.9635 -5.6080 -0.7844 13 1 4.9505 -5.2895 -1.8163 14 6 4.3305 -6.7759 -0.4153 15 7 4.3459 -7.1635 0.8414 16 14 3.4507 -7.8078 -1.7002 17 1 4.4211 -8.2384 -2.7385 18 1 2.8565 -9.0043 -1.0520 19 1 2.3756 -7.0010 -2.3315 20 6 7.6227 -3.6515 -0.9196 21 6 8.5984 -3.2430 0.1536 22 6 9.2103 -4.2128 0.9256 23 6 10.1068 -3.8264 1.9099 24 6 10.3558 -2.4730 2.0815 25 6 9.7072 -1.5610 1.2710 26 7 8.8628 -1.9651 0.3419 27 6 2.1967 -1.1963 -0.0005 28 6 1.4432 -2.5015 -0.0017 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6561 2.1324 0.0004 33 1 4.1169 2.1395 -0.0010 34 1 5.3561 0.0129 0.0096 35 1 3.8696 -3.2091 0.3482 36 1 6.4620 -5.3672 0.7158 37 1 4.9603 -4.4596 1.0143 38 1 3.9008 -7.9853 1.1010 39 1 7.8441 -4.6682 -1.2441 40 1 7.7101 -2.9724 -1.7678 41 1 8.9926 -5.2582 0.7642 42 1 10.6001 -4.5620 2.5279 43 1 11.0486 -2.1362 2.8384 44 1 9.8954 -0.5052 1.3985 45 1 1.2614 -2.8169 1.0257 46 1 0.4908 -2.3707 -0.5154 47 1 2.0322 -3.2606 -0.5161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079067548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:34 Heat of formation + Delta-G solvation = 21.984395 kcal Electronic energy + Delta-G solvation = -29470.290234 eV Core-core repulsion = 25617.475778 eV Total energy + Delta-G solvation = -3852.814456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87919 -41.01439 -39.90383 -36.99492 -35.96614 -34.70191 -34.18869 -33.38101 -32.81684 -31.35668 -29.46243 -28.39356 -27.41019 -27.08279 -25.06649 -24.30478 -23.63561 -22.42972 -22.02703 -20.46870 -19.27179 -18.70970 -17.96347 -17.64732 -17.09119 -16.88490 -16.67764 -16.50319 -16.41011 -16.20058 -15.55283 -15.20837 -14.91472 -14.59195 -14.40874 -14.34572 -14.21836 -13.91859 -13.86619 -13.67457 -13.56647 -13.36207 -13.14227 -12.89085 -12.76021 -12.69651 -12.63499 -12.57259 -12.21497 -12.13041 -11.83097 -11.79328 -11.29262 -10.85678 -10.78431 -10.60897 -10.34724 -9.97273 -9.57285 -9.41401 -8.79185 -8.22432 -6.38650 0.13036 0.41248 0.45665 0.51444 1.42090 1.43651 1.50839 1.79975 2.17289 2.39228 2.84992 2.94718 3.07097 3.14493 3.41232 3.83480 3.92416 3.99388 4.02689 4.17934 4.20705 4.26772 4.30301 4.41779 4.52218 4.59607 4.61501 4.70928 4.76557 4.78885 4.83423 4.86862 4.92935 4.95657 5.00590 5.08448 5.12688 5.22345 5.28166 5.34550 5.43049 5.58176 5.63968 5.69593 5.75454 5.80512 5.82607 5.99242 6.09138 6.24937 6.65261 6.95551 7.15760 7.33822 7.60523 8.81987 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007004 B = 0.005157 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3996.542272 B = 5428.356481 C = 8815.662824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.162 4.162 6 C 0.155 3.845 7 N -0.679 5.679 8 C 0.701 3.299 9 O -0.601 6.601 10 N -0.605 5.605 11 C 0.258 3.742 12 C -0.550 4.550 13 H 0.051 0.949 14 C 0.031 3.969 15 N -0.914 5.914 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.274 1.274 20 C 0.186 3.814 21 C 0.093 3.907 22 C -0.165 4.165 23 C -0.078 4.078 24 C -0.165 4.165 25 C 0.076 3.924 26 N -0.497 5.497 27 C -0.136 4.136 28 C -0.114 4.114 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.031 0.969 37 H 0.015 0.985 38 H 0.269 0.731 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 9.916 3.706 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.163 4.163 4 C -0.123 4.123 5 C -0.183 4.183 6 C 0.059 3.941 7 N -0.326 5.326 8 C 0.403 3.597 9 O -0.482 6.482 10 N -0.339 5.339 11 C 0.137 3.863 12 C -0.588 4.588 13 H 0.069 0.931 14 C -0.171 4.171 15 N -0.552 5.552 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.199 1.199 20 C 0.061 3.939 21 C -0.045 4.045 22 C -0.186 4.186 23 C -0.104 4.104 24 C -0.185 4.185 25 C -0.081 4.081 26 N -0.206 5.206 27 C -0.139 4.139 28 C -0.171 4.171 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.253 0.747 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.158 0.842 42 H 0.184 0.816 43 H 0.188 0.812 44 H 0.188 0.812 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.974 10.961 2.923 11.385 hybrid contribution 0.135 -1.981 0.076 1.987 sum 1.108 8.980 2.999 9.532 Atomic orbital electron populations 1.20888 0.88627 1.03825 1.03356 1.19906 0.97552 0.91278 0.98284 1.21247 0.93625 0.98338 1.03076 1.21215 0.94930 0.97145 0.98966 1.21370 1.00870 0.91844 1.04183 1.17840 0.91151 0.85143 0.99998 1.42923 1.14089 1.11408 1.64137 1.15983 0.81009 0.83602 0.79103 1.90796 1.71372 1.35535 1.50453 1.47302 1.13688 1.11545 1.61368 1.19009 0.93300 0.81787 0.92212 1.21584 1.34916 1.07423 0.94890 0.93075 1.25557 0.96395 0.98069 0.97032 1.69991 1.43834 1.24149 1.17247 0.85678 0.78945 0.78191 0.79306 1.19813 1.20519 1.19901 1.20044 0.78284 1.02233 0.93309 1.21668 0.96045 0.89284 0.97507 1.22221 0.98173 1.01089 0.97098 1.21982 0.95289 0.97331 0.95801 1.22516 1.01352 0.93592 1.00994 1.23262 0.92084 1.01709 0.91088 1.67546 1.14833 1.18416 1.19849 1.19674 0.90676 0.97198 1.06372 1.20784 1.00539 0.93012 1.02745 0.89908 0.89789 0.90845 0.83050 0.84191 0.86350 0.74714 0.95138 0.96734 0.92149 0.87854 0.90575 0.84244 0.81647 0.81200 0.81184 0.90650 0.88731 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.60 71.24 0.68 -1.36 16 2 C -0.07 -1.87 5.88 -19.89 -0.12 -1.99 16 3 C -0.14 -3.69 9.70 22.29 0.22 -3.47 16 4 C -0.10 -3.14 10.04 22.25 0.22 -2.92 16 5 C -0.16 -6.26 8.72 22.39 0.20 -6.06 16 6 C 0.15 6.12 6.41 38.15 0.24 6.37 16 7 N -0.68 -29.41 4.81 -317.18 -1.53 -30.93 16 8 C 0.70 32.79 8.08 179.05 1.45 34.24 16 9 O -0.60 -30.01 13.09 -3.97 -0.05 -30.06 16 10 N -0.61 -27.15 2.44 -848.61 -2.07 -29.22 16 11 C 0.26 12.34 4.87 85.63 0.42 12.76 16 12 C -0.55 -28.05 9.39 25.60 0.24 -27.81 16 13 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 14 C 0.03 1.57 5.46 84.65 0.46 2.03 16 15 N -0.91 -48.42 13.29 21.45 0.28 -48.13 16 16 Si 0.95 40.84 29.54 68.60 2.03 42.86 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 C 0.19 7.44 5.71 85.63 0.49 7.93 16 21 C 0.09 3.43 6.36 42.55 0.27 3.70 16 22 C -0.17 -5.07 9.72 22.36 0.22 -4.86 16 23 C -0.08 -1.86 10.18 22.47 0.23 -1.63 16 24 C -0.16 -3.67 10.11 22.36 0.23 -3.45 16 25 C 0.08 2.16 11.18 84.67 0.95 3.11 16 26 N -0.50 -18.54 10.27 -183.89 -1.89 -20.43 16 27 C -0.14 -4.51 5.90 -19.74 -0.12 -4.62 16 28 C -0.11 -3.45 9.04 71.24 0.64 -2.80 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.07 1.31 5.94 -2.39 -0.01 1.30 16 32 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.12 5.25 5.79 -2.91 -0.02 5.23 16 35 H 0.41 18.07 5.21 -92.71 -0.48 17.59 16 36 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 37 H 0.01 0.75 6.46 -2.39 -0.02 0.73 16 38 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 39 H 0.10 3.82 7.97 -2.39 -0.02 3.80 16 40 H 0.08 3.22 7.42 -2.38 -0.02 3.21 16 41 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 44 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 2.30 5.94 -2.39 -0.01 2.29 16 47 H 0.04 1.60 6.98 -2.39 -0.02 1.58 16 Total: -1.00 -67.29 389.74 4.20 -63.09 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: 0.51 Total: 43.67 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.92 Total: 9.16 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -5.20 Total: -128.71 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -67.29 4.20 -63.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079067548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.072 kcal (2) G-P(sol) polarization free energy of solvation -67.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds