Wall clock time and date at job start Tue Mar 31 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47046 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99777 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.17303 * 7 2 1 9 9 N 1.36935 * 120.00391 * 343.16653 * 7 2 1 10 10 C 1.46926 * 120.63241 * 151.92989 * 9 7 2 11 11 C 1.53189 * 108.89548 * 126.46715 * 10 9 7 12 12 C 1.53049 * 109.31006 * 54.56312 * 11 10 9 13 13 C 1.52999 * 109.45630 * 178.61578 * 12 11 10 14 14 N 1.46502 * 109.46567 * 185.00496 * 13 12 11 15 15 C 1.39075 * 119.99614 * 180.02562 * 14 13 12 16 16 N 1.32401 * 119.71172 * 359.72334 * 15 14 13 17 17 C 1.31962 * 121.63474 * 179.71132 * 16 15 14 18 18 C 1.38053 * 120.87262 * 0.56776 * 17 16 15 19 19 N 1.48005 * 120.32697 * 179.74450 * 18 17 16 20 20 O 1.21802 * 119.99733 * 179.97438 * 19 18 17 21 21 O 1.21803 * 120.00187 * 359.97438 * 19 18 17 22 22 C 1.38845 * 119.34052 * 359.71883 * 18 17 16 23 23 C 1.38421 * 118.49576 * 0.02562 * 22 18 17 24 24 Cl 1.73594 * 120.46211 * 180.02562 * 23 22 18 25 25 C 1.53038 * 109.53915 * 298.63665 * 12 11 10 26 26 C 1.46960 * 120.65281 * 331.75570 * 9 7 2 27 27 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58436 * 6.60522 * 10 9 7 29 29 H 1.08996 * 109.58760 * 246.33067 * 10 9 7 30 30 H 1.09001 * 109.49772 * 174.51715 * 11 10 9 31 31 H 1.08999 * 109.49563 * 294.61749 * 11 10 9 32 32 H 1.08997 * 109.45734 * 58.65662 * 12 11 10 33 33 H 1.09006 * 109.46769 * 304.99999 * 13 12 11 34 34 H 1.08994 * 109.47708 * 65.00219 * 13 12 11 35 35 H 0.96990 * 120.00673 * 359.97438 * 14 13 12 36 36 H 1.07994 * 119.55866 * 180.26608 * 17 16 15 37 37 H 1.08004 * 120.75303 * 180.02562 * 22 18 17 38 38 H 1.08995 * 109.49486 * 181.31850 * 25 12 11 39 39 H 1.08997 * 109.49624 * 301.38055 * 25 12 11 40 40 H 1.08994 * 109.46893 * 113.74819 * 26 9 7 41 41 H 1.09005 * 109.71148 * 353.45478 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2223 -0.2702 9 7 1.3696 -2.3625 0.3445 10 6 1.8155 -3.6530 -0.1982 11 6 2.0656 -4.6198 0.9635 12 6 0.8080 -4.7040 1.8317 13 6 1.0423 -5.6951 2.9734 14 7 -0.1983 -5.8661 3.7337 15 6 -0.2308 -6.7248 4.8273 16 7 0.8612 -7.3889 5.1728 17 6 0.8745 -8.2088 6.2067 18 6 -0.2619 -8.4134 6.9634 19 7 -0.2349 -9.3401 8.1171 20 8 -1.2409 -9.5157 8.7808 21 8 0.7934 -9.9271 8.4027 22 6 -1.4303 -7.7406 6.6316 23 6 -1.4129 -6.8830 5.5452 24 17 -2.8446 -6.0156 5.0856 25 6 0.4931 -3.3232 2.4116 26 6 0.2252 -2.3417 1.2663 27 1 -0.4849 0.8401 -0.0004 28 1 2.7377 -3.5132 -0.7622 29 1 1.0450 -4.0600 -0.8529 30 1 2.3026 -5.6082 0.5696 31 1 2.8993 -4.2578 1.5650 32 1 -0.0310 -5.0424 1.2236 33 1 1.3520 -6.6560 2.5625 34 1 1.8223 -5.3131 3.6320 35 1 -0.9967 -5.3801 3.4749 36 1 1.7852 -8.7304 6.4613 37 1 -2.3324 -7.8833 7.2081 38 1 -0.3890 -3.3887 3.0485 39 1 1.3414 -2.9737 3.0000 40 1 -0.6768 -2.6406 0.7324 41 1 0.0957 -1.3370 1.6689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079096170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:20 Heat of formation + Delta-G solvation = 44.488020 kcal Electronic energy + Delta-G solvation = -26494.908751 eV Core-core repulsion = 22439.378270 eV Total energy + Delta-G solvation = -4055.530481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.44082 -40.97104 -38.40449 -37.27841 -36.76416 -36.22615 -33.66975 -33.10553 -31.58452 -30.33766 -29.98751 -27.38838 -26.11537 -24.82334 -23.69591 -22.94534 -22.23491 -21.22592 -19.76708 -19.41127 -19.03202 -18.43937 -17.77116 -17.26086 -16.86940 -15.90279 -15.65662 -15.40771 -14.90309 -14.54757 -14.36820 -13.91219 -13.83782 -13.64073 -13.36907 -12.74544 -12.67315 -12.48181 -12.26726 -11.84432 -11.78093 -11.63034 -11.53085 -11.36254 -11.25492 -11.05748 -10.81307 -10.65579 -10.46482 -10.39618 -10.36565 -10.28528 -10.00768 -9.70666 -9.58303 -8.57074 -8.53613 -6.77310 -5.88338 -3.30984 -0.45690 0.22385 1.01528 1.02522 1.47290 2.44295 2.82920 3.30506 3.39077 3.40855 3.59801 3.83268 3.98442 4.15766 4.41733 4.62262 4.80250 4.97335 4.99919 5.16650 5.21185 5.31003 5.42730 5.62118 5.67948 5.79077 5.96989 6.06436 6.13641 6.26589 6.37352 6.40103 6.49999 6.53149 6.58365 6.67355 6.85038 7.22728 7.25819 7.41431 7.52625 7.71397 8.35695 9.12036 9.75250 10.31456 11.20412 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.390520 B =12349.919902 C =12883.677469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.123 4.123 12 C -0.094 4.094 13 C 0.123 3.877 14 N -0.678 5.678 15 C 0.458 3.542 16 N -0.513 5.513 17 C 0.243 3.757 18 C -0.167 4.167 19 N 0.049 4.951 20 O -0.172 6.172 21 O -0.167 6.167 22 C 0.039 3.961 23 C -0.165 4.165 24 Cl -0.028 7.028 25 C -0.137 4.137 26 C 0.171 3.829 27 H 0.253 0.747 28 H 0.056 0.944 29 H 0.017 0.983 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.190 0.810 37 H 0.170 0.830 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.017 0.983 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -16.191 11.088 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.163 4.163 12 C -0.113 4.113 13 C 0.000 4.000 14 N -0.304 5.304 15 C 0.216 3.784 16 N -0.233 5.233 17 C 0.078 3.922 18 C -0.258 4.258 19 N 0.565 4.435 20 O -0.384 6.384 21 O -0.380 6.380 22 C 0.013 3.987 23 C -0.200 4.200 24 Cl 0.000 7.000 25 C -0.176 4.176 26 C 0.045 3.955 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.207 0.793 37 H 0.188 0.812 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.074 -15.279 9.774 18.256 hybrid contribution -0.909 0.815 0.673 1.394 sum -2.983 -14.464 10.447 18.090 Atomic orbital electron populations 1.70035 1.05287 1.25460 1.53978 1.25056 0.95306 0.98489 1.00818 0.86233 0.79406 0.83887 0.77323 1.20209 1.21666 1.21546 1.19221 0.92562 0.84754 1.41680 0.91611 1.44047 1.35819 1.01572 1.50043 1.20881 0.97786 0.86845 0.92593 1.21974 0.96206 0.99428 0.98647 1.21370 0.99842 0.95117 0.94947 1.21870 0.84566 1.00168 0.93412 1.45404 1.16091 1.42159 1.26710 1.18521 0.87408 0.86407 0.86092 1.67906 1.25590 1.12010 1.17747 1.22640 0.96536 0.88077 0.84912 1.21696 0.99028 1.07239 0.97886 1.43182 1.00234 0.99454 1.00628 1.94546 1.24630 1.69270 1.50003 1.94545 1.21434 1.48041 1.73998 1.20994 0.97783 0.87968 0.91998 1.21008 0.90578 1.06354 1.02058 1.98418 1.35523 1.74595 1.91440 1.22281 0.99998 0.95312 1.00008 1.20754 0.88714 0.98140 0.87889 0.93656 0.92581 0.96493 0.92767 0.91888 0.91125 0.90875 0.90570 0.73987 0.79317 0.81244 0.93805 0.92289 0.96490 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -13.92 3.00 -172.29 -0.52 -14.44 16 10 C 0.15 2.79 6.51 -3.71 -0.02 2.76 16 11 C -0.12 -1.82 5.36 -26.61 -0.14 -1.96 16 12 C -0.09 -1.28 2.19 -90.58 -0.20 -1.48 16 13 C 0.12 1.36 5.08 -4.04 -0.02 1.34 16 14 N -0.68 -7.02 5.38 -60.38 -0.32 -7.35 16 15 C 0.46 4.65 7.48 -154.92 -1.16 3.49 16 16 N -0.51 -5.18 9.57 -12.40 -0.12 -5.30 16 17 C 0.24 2.13 10.71 -17.56 -0.19 1.94 16 18 C -0.17 -1.59 6.87 -79.80 -0.55 -2.13 16 19 N 0.05 0.55 4.45 34.04 0.15 0.70 16 20 O -0.17 -2.07 18.52 -29.46 -0.55 -2.62 16 21 O -0.17 -1.94 18.46 -29.46 -0.54 -2.49 16 22 C 0.04 0.34 9.47 -39.29 -0.37 -0.04 16 23 C -0.16 -1.51 6.36 -39.16 -0.25 -1.76 16 24 Cl -0.03 -0.25 27.62 -51.86 -1.43 -1.68 16 25 C -0.14 -2.25 5.25 -26.61 -0.14 -2.39 16 26 C 0.17 3.76 5.30 -3.69 -0.02 3.74 16 27 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.06 1.07 7.93 -51.93 -0.41 0.65 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.42 4.23 6.30 -40.82 -0.26 3.97 16 36 H 0.19 1.22 7.61 -52.49 -0.40 0.82 16 37 H 0.17 1.21 7.69 -52.48 -0.40 0.80 16 38 H 0.04 0.64 7.15 -51.93 -0.37 0.27 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -28.91 358.28 -10.72 -39.63 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.09 Total: 0.15 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.29 Total: -3.32 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.19 Total: -51.13 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.09 Total: -5.10 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.43 Total: -1.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.91 -10.72 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079096170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.116 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds