Wall clock time and date at job start Tue Mar 31 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47046 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99777 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.17303 * 7 2 1 9 9 N 1.36935 * 120.00391 * 343.16653 * 7 2 1 10 10 C 1.46926 * 120.63241 * 151.92989 * 9 7 2 11 11 C 1.53189 * 108.89548 * 126.46715 * 10 9 7 12 12 C 1.53049 * 109.31006 * 54.56312 * 11 10 9 13 13 C 1.52999 * 109.45630 * 178.61578 * 12 11 10 14 14 N 1.46502 * 109.46567 * 185.00496 * 13 12 11 15 15 C 1.39075 * 119.99614 * 180.02562 * 14 13 12 16 16 N 1.32401 * 119.71172 * 359.72334 * 15 14 13 17 17 C 1.31962 * 121.63474 * 179.71132 * 16 15 14 18 18 C 1.38053 * 120.87262 * 0.56776 * 17 16 15 19 19 N 1.48005 * 120.32697 * 179.74450 * 18 17 16 20 20 O 1.21802 * 119.99733 * 179.97438 * 19 18 17 21 21 O 1.21803 * 120.00187 * 359.97438 * 19 18 17 22 22 C 1.38845 * 119.34052 * 359.71883 * 18 17 16 23 23 C 1.38421 * 118.49576 * 0.02562 * 22 18 17 24 24 Cl 1.73594 * 120.46211 * 180.02562 * 23 22 18 25 25 C 1.53038 * 109.53915 * 298.63665 * 12 11 10 26 26 C 1.46960 * 120.65281 * 331.75570 * 9 7 2 27 27 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58436 * 6.60522 * 10 9 7 29 29 H 1.08996 * 109.58760 * 246.33067 * 10 9 7 30 30 H 1.09001 * 109.49772 * 174.51715 * 11 10 9 31 31 H 1.08999 * 109.49563 * 294.61749 * 11 10 9 32 32 H 1.08997 * 109.45734 * 58.65662 * 12 11 10 33 33 H 1.09006 * 109.46769 * 304.99999 * 13 12 11 34 34 H 1.08994 * 109.47708 * 65.00219 * 13 12 11 35 35 H 0.96990 * 120.00673 * 359.97438 * 14 13 12 36 36 H 1.07994 * 119.55866 * 180.26608 * 17 16 15 37 37 H 1.08004 * 120.75303 * 180.02562 * 22 18 17 38 38 H 1.08995 * 109.49486 * 181.31850 * 25 12 11 39 39 H 1.08997 * 109.49624 * 301.38055 * 25 12 11 40 40 H 1.08994 * 109.46893 * 113.74819 * 26 9 7 41 41 H 1.09005 * 109.71148 * 353.45478 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2223 -0.2702 9 7 1.3696 -2.3625 0.3445 10 6 1.8155 -3.6530 -0.1982 11 6 2.0656 -4.6198 0.9635 12 6 0.8080 -4.7040 1.8317 13 6 1.0423 -5.6951 2.9734 14 7 -0.1983 -5.8661 3.7337 15 6 -0.2308 -6.7248 4.8273 16 7 0.8612 -7.3889 5.1728 17 6 0.8745 -8.2088 6.2067 18 6 -0.2619 -8.4134 6.9634 19 7 -0.2349 -9.3401 8.1171 20 8 -1.2409 -9.5157 8.7808 21 8 0.7934 -9.9271 8.4027 22 6 -1.4303 -7.7406 6.6316 23 6 -1.4129 -6.8830 5.5452 24 17 -2.8446 -6.0156 5.0856 25 6 0.4931 -3.3232 2.4116 26 6 0.2252 -2.3417 1.2663 27 1 -0.4849 0.8401 -0.0004 28 1 2.7377 -3.5132 -0.7622 29 1 1.0450 -4.0600 -0.8529 30 1 2.3026 -5.6082 0.5696 31 1 2.8993 -4.2578 1.5650 32 1 -0.0310 -5.0424 1.2236 33 1 1.3520 -6.6560 2.5625 34 1 1.8223 -5.3131 3.6320 35 1 -0.9967 -5.3801 3.4749 36 1 1.7852 -8.7304 6.4613 37 1 -2.3324 -7.8833 7.2081 38 1 -0.3890 -3.3887 3.0485 39 1 1.3414 -2.9737 3.0000 40 1 -0.6768 -2.6406 0.7324 41 1 0.0957 -1.3370 1.6689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079096170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:19 Heat of formation + Delta-G solvation = 29.799897 kcal Electronic energy + Delta-G solvation = -26495.545676 eV Core-core repulsion = 22439.378270 eV Total energy + Delta-G solvation = -4056.167406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.25842 -41.73195 -39.68845 -37.98336 -37.62042 -37.34841 -35.11995 -33.92022 -32.96312 -31.57483 -31.46610 -28.62110 -27.10258 -26.07073 -24.81055 -23.99435 -23.53245 -22.53951 -20.80926 -20.56028 -19.87322 -19.31051 -18.65743 -18.59289 -18.04079 -16.87387 -16.58761 -16.47060 -16.22784 -15.71223 -15.33979 -15.29199 -15.20887 -14.82494 -14.57567 -13.99098 -13.94510 -13.70309 -13.38544 -13.09138 -12.90877 -12.69519 -12.61088 -12.55183 -12.44798 -12.32701 -12.25627 -12.09071 -11.91133 -11.80938 -11.63184 -11.27359 -11.17465 -11.11832 -11.02739 -10.56133 -9.31229 -8.68542 -7.89674 -5.34247 -1.26243 -0.46237 0.20562 0.24220 0.75772 1.43394 1.46248 1.55856 1.65664 2.10318 2.49285 2.88756 3.11777 3.25276 3.28807 3.46316 3.68351 3.78688 3.88742 3.91041 4.04672 4.32689 4.49916 4.51345 4.52133 4.66089 4.70992 4.75023 4.90868 5.01507 5.14047 5.21708 5.25162 5.27640 5.40466 5.48909 5.58142 5.65296 5.74114 5.76986 6.38245 6.48743 6.52696 7.14316 7.86618 8.36573 9.16537 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.390520 B =12349.919902 C =12883.677469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.612 5.612 10 C 0.138 3.862 11 C -0.111 4.111 12 C -0.084 4.084 13 C 0.138 3.862 14 N -0.680 5.680 15 C 0.454 3.546 16 N -0.522 5.522 17 C 0.250 3.750 18 C -0.170 4.170 19 N 0.051 4.949 20 O -0.194 6.194 21 O -0.172 6.172 22 C 0.044 3.956 23 C -0.165 4.165 24 Cl -0.026 7.026 25 C -0.121 4.121 26 C 0.176 3.824 27 H 0.249 0.751 28 H 0.053 0.947 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.421 0.579 36 H 0.212 0.788 37 H 0.183 0.817 38 H 0.063 0.937 39 H 0.050 0.950 40 H -0.004 1.004 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 -17.737 11.786 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.013 3.987 11 C -0.151 4.151 12 C -0.103 4.103 13 C 0.015 3.985 14 N -0.307 5.307 15 C 0.212 3.788 16 N -0.241 5.241 17 C 0.086 3.914 18 C -0.261 4.261 19 N 0.564 4.436 20 O -0.402 6.402 21 O -0.386 6.386 22 C 0.018 3.982 23 C -0.201 4.201 24 Cl 0.003 6.997 25 C -0.161 4.161 26 C 0.050 3.950 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.261 0.739 36 H 0.228 0.772 37 H 0.200 0.800 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.014 0.986 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.191 -16.868 10.499 19.904 hybrid contribution -1.183 1.264 0.401 1.777 sum -2.373 -15.604 10.900 19.182 Atomic orbital electron populations 1.70181 1.06585 1.25658 1.55722 1.25765 0.96035 1.01408 1.01527 0.85274 0.78736 0.80153 0.76716 1.19080 1.22037 1.21803 1.19534 0.92766 0.86111 1.40481 0.91676 1.44338 1.35930 1.02410 1.50896 1.21077 0.97283 0.85945 0.94400 1.21823 0.96531 0.99754 0.96975 1.21221 0.99426 0.93911 0.95754 1.21613 0.84750 0.99840 0.92327 1.45313 1.15859 1.42543 1.26969 1.18606 0.87797 0.86350 0.86004 1.67951 1.25559 1.12405 1.18218 1.22980 0.97020 0.87362 0.84050 1.21754 0.99725 1.07193 0.97460 1.43373 0.99944 0.99466 1.00851 1.94546 1.24820 1.70018 1.50834 1.94533 1.21438 1.48339 1.74266 1.21149 0.98104 0.87218 0.91691 1.20969 0.90510 1.06500 1.02074 1.98424 1.35324 1.74538 1.91419 1.22040 1.00555 0.95578 0.97880 1.20573 0.87763 0.97571 0.89104 0.94216 0.92884 0.96803 0.89251 0.92165 0.90824 0.89295 0.90736 0.73891 0.77177 0.79954 0.91825 0.93093 0.98587 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 11.20 21.65 0.24 -53.99 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 3 Si 0.96 44.08 29.59 68.60 2.03 46.11 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.26 -13.80 9.58 84.03 0.81 -12.99 16 8 H 0.07 3.40 7.88 -2.91 -0.02 3.38 16 9 N -0.61 -29.07 3.00 -699.02 -2.10 -31.17 16 10 C 0.14 5.19 6.51 86.36 0.56 5.75 16 11 C -0.11 -3.02 5.36 30.67 0.16 -2.86 16 12 C -0.08 -2.10 2.19 -10.76 -0.02 -2.12 16 13 C 0.14 2.62 5.08 86.38 0.44 3.06 16 14 N -0.68 -12.28 5.38 -344.95 -1.86 -14.14 16 15 C 0.45 8.05 7.48 133.05 1.00 9.05 16 16 N -0.52 -9.04 9.57 -193.14 -1.85 -10.88 16 17 C 0.25 3.71 10.71 84.63 0.91 4.62 16 18 C -0.17 -2.86 6.87 36.48 0.25 -2.61 16 19 N 0.05 1.07 4.45 -46.23 -0.21 0.87 16 20 O -0.19 -4.47 18.52 18.88 0.35 -4.12 16 21 O -0.17 -3.74 18.46 18.88 0.35 -3.39 16 22 C 0.04 0.68 9.47 22.46 0.21 0.89 16 23 C -0.17 -2.68 6.36 22.54 0.14 -2.53 16 24 Cl -0.03 -0.41 27.62 -2.72 -0.08 -0.48 16 25 C -0.12 -3.88 5.25 30.67 0.16 -3.72 16 26 C 0.18 7.88 5.30 86.36 0.46 8.34 16 27 H 0.25 14.00 8.31 -92.71 -0.77 13.22 16 28 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 29 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.42 7.50 6.30 -92.72 -0.58 6.92 16 36 H 0.21 2.10 7.61 -2.91 -0.02 2.07 16 37 H 0.18 2.25 7.69 -2.91 -0.02 2.23 16 38 H 0.06 1.77 7.15 -2.39 -0.02 1.75 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.05 2.55 6.07 -2.38 -0.01 2.54 16 Total: -1.00 -63.53 358.28 2.87 -60.66 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.49 Total: 8.11 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 5.49 Total: 2.43 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -5.76 Total: -109.32 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.70 Total: -7.51 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.48 kcal Total: -63.53 2.87 -60.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079096170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.462 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds