Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 N 1.46498 * 109.47591 * 185.02995 * 3 2 1 5 5 C 1.36870 * 119.99867 * 285.92017 * 4 3 2 6 6 H 1.08004 * 119.99555 * 172.75206 * 5 4 3 7 7 C 1.39044 * 120.00073 * 352.74419 * 5 4 3 8 8 N 1.31362 * 119.99935 * 3.10702 * 7 5 4 9 9 Si 1.86802 * 120.00075 * 183.10993 * 7 5 4 10 10 H 1.48495 * 109.47211 * 59.99768 * 9 7 5 11 11 H 1.48498 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46724 * 299.99770 * 9 7 5 13 13 C 1.34778 * 120.00062 * 105.90927 * 4 3 2 14 14 O 1.21589 * 120.00066 * 174.29729 * 13 4 3 15 15 C 1.47743 * 120.00024 * 354.30566 * 13 4 3 16 16 C 1.39682 * 120.11865 * 313.17392 * 15 13 4 17 17 C 1.37947 * 119.96061 * 179.97438 * 16 15 13 18 18 C 1.38299 * 120.21625 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.87999 * 179.97438 * 18 17 16 20 20 C 1.38851 * 120.24737 * 0.25204 * 18 17 16 21 21 O 1.35900 * 119.98492 * 179.72108 * 20 18 17 22 22 C 1.35729 * 118.00372 * 184.17103 * 21 20 18 23 23 C 1.39291 * 120.84645 * 256.72353 * 22 21 20 24 24 C 1.37971 * 119.08640 * 179.77284 * 23 22 21 25 25 N 1.31957 * 120.82374 * 0.51103 * 24 23 22 26 26 C 1.31957 * 121.86988 * 359.73975 * 25 24 23 27 27 C 1.37963 * 120.82777 * 0.02562 * 26 25 24 28 28 C 1.38494 * 120.03338 * 359.49116 * 20 18 17 29 29 H 1.08999 * 109.47634 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47117 * 299.99678 * 1 2 3 31 31 H 1.08998 * 109.47538 * 59.99771 * 1 2 3 32 32 H 1.09003 * 109.46488 * 240.00425 * 2 1 3 33 33 H 1.08998 * 109.47538 * 120.00228 * 2 1 3 34 34 H 1.08997 * 109.47108 * 65.02968 * 3 2 1 35 35 H 1.09006 * 109.46941 * 305.03335 * 3 2 1 36 36 H 0.97000 * 119.99885 * 179.97438 * 8 7 5 37 37 H 1.07997 * 120.02011 * 359.95857 * 16 15 13 38 38 H 1.07994 * 119.89589 * 179.97438 * 17 16 15 39 39 H 1.09003 * 109.46641 * 89.99491 * 19 18 17 40 40 H 1.09007 * 109.46482 * 330.00466 * 19 18 17 41 41 H 1.08994 * 109.47539 * 210.00309 * 19 18 17 42 42 H 1.08004 * 120.45223 * 0.02562 * 23 22 21 43 43 H 1.08000 * 119.58366 * 180.22901 * 24 23 22 44 44 H 1.08001 * 119.58703 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.45965 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.10777 * 180.25141 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4443 -0.1211 5 6 4.2758 1.0869 0.9483 6 1 5.3432 0.9746 0.8275 7 6 3.6898 0.8684 2.1902 8 7 2.3852 0.9453 2.3236 9 14 4.7577 0.4657 3.6690 10 1 5.7079 1.5808 3.9118 11 1 3.8973 0.2787 4.8648 12 1 5.5169 -0.7831 3.4059 13 6 4.0791 1.7978 -1.2856 14 8 5.2886 1.8998 -1.3567 15 6 3.2443 2.0614 -2.4757 16 6 2.2265 1.1724 -2.8288 17 6 1.4486 1.4220 -3.9404 18 6 1.6733 2.5503 -4.7080 19 6 0.8194 2.8153 -5.9211 20 6 2.6864 3.4370 -4.3684 21 8 2.9062 4.5411 -5.1296 22 6 3.9606 5.3346 -4.8120 23 6 3.7700 6.5430 -4.1460 24 6 4.8681 7.3189 -3.8368 25 7 6.0846 6.9336 -4.1729 26 6 6.3051 5.7985 -4.8087 27 6 5.2602 4.9644 -5.1494 28 6 3.4701 3.1992 -3.2515 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.7521 1.9296 0.9316 35 1 1.6049 1.9817 -0.8415 36 1 1.9764 0.7925 3.1898 37 1 2.0487 0.2900 -2.2321 38 1 0.6622 0.7338 -4.2127 39 1 -0.0493 3.4069 -5.6317 40 1 0.4883 1.8678 -6.3463 41 1 1.4012 3.3628 -6.6625 42 1 2.7765 6.8660 -3.8717 43 1 4.7299 8.2556 -3.3172 44 1 7.3161 5.5189 -5.0657 45 1 5.4476 4.0366 -5.6694 46 1 4.2558 3.8902 -2.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = 20.089295 kcal Electronic energy + Delta-G solvation = -29806.490683 eV Core-core repulsion = 25855.875386 eV Total energy + Delta-G solvation = -3950.615296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16766 -39.67287 -38.73363 -37.12036 -35.49351 -32.93405 -32.07454 -31.57455 -31.43927 -31.37209 -29.81796 -27.34303 -25.81191 -24.56595 -24.09595 -23.69140 -21.89253 -21.80137 -20.71402 -19.78420 -18.51839 -17.04952 -16.95835 -16.63693 -16.01526 -15.80479 -15.62146 -15.08665 -14.65210 -14.38656 -14.25231 -14.00205 -13.79999 -13.73509 -13.66385 -13.46651 -13.19187 -13.04244 -12.80080 -12.34656 -12.05033 -11.89877 -11.79625 -11.55208 -11.32468 -11.11362 -11.05115 -10.91231 -10.66874 -10.43583 -10.30246 -10.12605 -9.84390 -9.78528 -9.57207 -9.34766 -8.90587 -8.66199 -8.44758 -7.96283 -7.85429 -6.24693 -3.90368 0.85508 0.97171 1.35688 1.61006 3.04102 3.12134 3.18480 3.22763 3.61752 3.73039 4.00069 4.18805 4.32320 4.66981 4.71956 4.76705 4.96063 4.98942 5.03853 5.07944 5.21087 5.38985 5.45514 5.52555 5.61451 5.65832 5.68208 5.74773 5.80010 5.95138 5.96938 5.98575 6.03964 6.22586 6.24454 6.38538 6.41566 6.48645 6.59386 6.69941 6.80851 6.85774 6.93769 7.01011 7.31749 7.51882 7.58335 7.67992 7.81287 7.98750 8.46013 9.08099 9.33592 9.88723 10.54799 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.003903 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.425618 B = 7172.380796 C = 8973.197376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.104 3.896 4 N -0.425 5.425 5 C -0.289 4.289 6 H 0.104 0.896 7 C 0.025 3.975 8 N -0.871 5.871 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.464 3.536 14 O -0.593 6.593 15 C -0.051 4.051 16 C -0.125 4.125 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.102 4.102 20 C 0.107 3.893 21 O -0.258 6.258 22 C 0.137 3.863 23 C -0.179 4.179 24 C 0.114 3.886 25 N -0.486 5.486 26 C 0.117 3.883 27 C -0.185 4.185 28 C -0.153 4.153 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.035 0.965 36 H 0.267 0.733 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.142 0.858 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 5.172 -12.081 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.018 4.018 4 N -0.140 5.140 5 C -0.417 4.417 6 H 0.122 0.878 7 C -0.176 4.176 8 N -0.512 5.512 9 Si 0.761 3.239 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.253 3.747 14 O -0.479 6.479 15 C -0.055 4.055 16 C -0.144 4.144 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.159 4.159 20 C 0.065 3.935 21 O -0.170 6.170 22 C 0.086 3.914 23 C -0.200 4.200 24 C -0.043 4.043 25 N -0.196 5.196 26 C -0.039 4.039 27 C -0.205 4.205 28 C -0.172 4.172 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.160 0.840 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.341 5.765 -11.828 13.855 hybrid contribution -0.325 -0.841 0.621 1.095 sum -4.666 4.924 -11.207 13.100 Atomic orbital electron populations 1.21618 0.97253 0.99942 1.00856 1.21945 0.93888 0.98357 1.01379 1.22363 0.79343 0.97227 1.02906 1.43778 1.06397 1.54551 1.09310 1.19816 0.93333 1.41830 0.86696 0.87795 1.25334 0.96211 0.97091 0.98970 1.69945 1.08533 1.48274 1.24466 0.85858 0.79232 0.79211 0.79648 1.19826 1.20770 1.19862 1.17819 0.87509 0.86076 0.83304 1.90616 1.13988 1.58807 1.84522 1.20048 0.95199 0.94028 0.96202 1.21811 0.94696 1.00625 0.97253 1.20768 0.99599 0.96148 0.94584 1.19201 0.97501 0.94745 0.99657 1.20599 0.98600 1.01907 0.94803 1.18651 0.96813 0.86855 0.91226 1.84214 1.45269 1.34616 1.52928 1.18950 0.86556 0.90853 0.95012 1.22355 1.02005 0.96174 0.99431 1.22708 0.86881 0.99098 0.95574 1.67696 1.24454 1.16180 1.11265 1.22701 0.99319 0.88967 0.92936 1.22550 0.92623 1.02645 1.02660 1.21204 1.01198 0.99459 0.95386 0.94178 0.92575 0.94245 0.95061 0.88960 0.85054 0.94711 0.92155 0.84116 0.85169 0.91477 0.91679 0.91491 0.83877 0.81974 0.82001 0.83968 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.15 0.37 -1.90 16 2 C -0.12 -2.35 4.99 -26.73 -0.13 -2.49 16 3 C 0.10 2.31 4.18 -4.04 -0.02 2.29 16 4 N -0.43 -10.78 2.68 -115.92 -0.31 -11.09 16 5 C -0.29 -7.78 9.37 -15.00 -0.14 -7.92 16 6 H 0.10 2.96 7.21 -52.48 -0.38 2.59 16 7 C 0.03 0.63 5.10 -17.45 -0.09 0.54 16 8 N -0.87 -20.91 7.57 55.50 0.42 -20.49 16 9 Si 0.93 19.99 29.55 -169.99 -5.02 14.97 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.46 11.79 7.17 -12.38 -0.09 11.70 16 14 O -0.59 -17.06 16.62 5.29 0.09 -16.97 16 15 C -0.05 -1.07 4.78 -104.99 -0.50 -1.57 16 16 C -0.13 -2.23 7.62 -39.15 -0.30 -2.53 16 17 C -0.09 -1.35 9.67 -39.67 -0.38 -1.74 16 18 C -0.11 -1.59 5.90 -104.37 -0.62 -2.20 16 19 C -0.10 -1.13 9.79 36.01 0.35 -0.77 16 20 C 0.11 1.73 6.59 -39.26 -0.26 1.47 16 21 O -0.26 -3.82 9.04 -3.09 -0.03 -3.85 16 22 C 0.14 1.93 4.35 -38.80 -0.17 1.76 16 23 C -0.18 -2.24 10.08 -39.29 -0.40 -2.63 16 24 C 0.11 1.37 11.17 -17.60 -0.20 1.17 16 25 N -0.49 -6.62 10.36 -13.33 -0.14 -6.76 16 26 C 0.12 1.48 11.17 -17.60 -0.20 1.29 16 27 C -0.18 -2.45 9.27 -39.29 -0.36 -2.81 16 28 C -0.15 -2.91 8.65 -39.00 -0.34 -3.25 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.61 5.73 -51.93 -0.30 0.31 16 33 H 0.09 2.10 6.06 -51.93 -0.31 1.78 16 34 H 0.13 3.17 5.55 -51.94 -0.29 2.88 16 35 H 0.03 0.72 5.42 -51.93 -0.28 0.44 16 36 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 37 H 0.14 2.52 4.38 -52.49 -0.23 2.29 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.60 8.08 -51.92 -0.42 0.18 16 41 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 42 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 43 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.13 2.57 6.47 -52.49 -0.34 2.23 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -30.36 374.50 -8.70 -39.06 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.88 Total: 9.09 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -3.47 Total: -9.60 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.03 Total: -38.34 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.06 Total: -20.82 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.36 -8.70 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.146 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds