Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38284 * 119.88681 * 2 1 4 4 C 1.37964 * 120.21089 * 179.73905 * 3 2 1 5 5 C 1.39610 * 119.96818 * 0.52061 * 4 3 2 6 6 C 1.47856 * 120.11423 * 179.73767 * 5 4 3 7 7 O 1.21555 * 119.99683 * 203.09829 * 6 5 4 8 8 N 1.34777 * 120.00425 * 23.10666 * 6 5 4 9 9 C 1.46504 * 119.99738 * 5.15050 * 8 6 5 10 10 C 1.46498 * 120.00354 * 185.15891 * 8 6 5 11 11 H 1.09004 * 109.46953 * 359.97438 * 10 8 6 12 12 C 1.52997 * 109.47472 * 119.99264 * 10 8 6 13 13 C 1.50702 * 109.47046 * 239.99858 * 10 8 6 14 14 H 1.08003 * 119.99608 * 334.69133 * 13 10 8 15 15 C 1.37877 * 120.00209 * 154.70007 * 13 10 8 16 16 N 1.31512 * 120.00173 * 174.83633 * 15 13 10 17 17 Si 1.86800 * 119.99886 * 354.82967 * 15 13 10 18 18 H 1.48502 * 109.47390 * 275.09030 * 17 15 13 19 19 H 1.48503 * 109.47065 * 35.08725 * 17 15 13 20 20 H 1.48495 * 109.47078 * 155.09058 * 17 15 13 21 21 C 1.39473 * 119.76521 * 359.46131 * 5 4 3 22 22 C 1.38509 * 119.79651 * 0.27813 * 21 5 4 23 23 O 1.35902 * 119.99428 * 179.97438 * 22 21 5 24 24 C 1.35724 * 117.99893 * 266.93073 * 23 22 21 25 25 C 1.39282 * 120.85573 * 4.88952 * 24 23 22 26 26 C 1.37968 * 119.09470 * 179.70795 * 25 24 23 27 27 N 1.31964 * 120.82144 * 0.58383 * 26 25 24 28 28 C 1.31964 * 121.86627 * 359.71603 * 27 26 25 29 29 C 1.37961 * 120.82817 * 359.97241 * 28 27 26 30 30 H 1.09000 * 109.47019 * 270.02402 * 1 2 3 31 31 H 1.08999 * 109.46845 * 30.01539 * 1 2 3 32 32 H 1.08997 * 109.46961 * 150.01800 * 1 2 3 33 33 H 1.08000 * 119.89222 * 0.03071 * 3 2 1 34 34 H 1.08004 * 120.01507 * 180.27994 * 4 3 2 35 35 H 1.08999 * 109.47002 * 263.84374 * 9 8 6 36 36 H 1.09001 * 109.47041 * 23.84464 * 9 8 6 37 37 H 1.09004 * 109.46795 * 143.84053 * 9 8 6 38 38 H 1.09002 * 109.46897 * 55.06530 * 12 10 8 39 39 H 1.09003 * 109.46964 * 175.06025 * 12 10 8 40 40 H 1.08993 * 109.47305 * 295.06709 * 12 10 8 41 41 H 0.97003 * 120.00220 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.10615 * 180.29888 * 21 5 4 43 43 H 1.08008 * 120.45121 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.59086 * 180.28981 * 26 25 24 45 45 H 1.08005 * 119.57898 * 180.02562 * 28 27 26 46 46 H 1.08000 * 120.45578 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1989 0.0000 4 6 3.5757 1.2067 0.0054 5 6 4.2799 0.0013 0.0000 6 6 5.7585 0.0059 -0.0001 7 8 6.3692 -0.9586 -0.4175 8 7 6.4291 1.0795 0.4627 9 6 5.6976 2.1944 1.0695 10 6 7.8895 1.1316 0.3590 11 1 8.2527 0.2202 -0.1159 12 6 8.2982 2.3429 -0.4816 13 6 8.4870 1.2519 1.7372 14 1 7.9094 1.6855 2.5402 15 6 9.7711 0.8086 1.9730 16 7 10.3293 1.0050 3.1475 17 14 10.7179 -0.0712 0.6243 18 1 10.3680 -1.5144 0.6345 19 1 10.3625 0.5149 -0.6931 20 1 12.1756 0.0864 0.8593 21 6 3.5838 -1.2073 0.0004 22 6 2.1987 -1.2038 0.0004 23 8 1.5164 -2.3791 0.0003 24 6 1.1410 -2.8978 -1.1964 25 6 1.5336 -2.2971 -2.3901 26 6 1.1363 -2.8586 -3.5861 27 7 0.3849 -3.9432 -3.6073 28 6 -0.0122 -4.5374 -2.4980 29 6 0.3482 -4.0412 -1.2622 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6525 2.1322 0.0005 34 1 4.1106 2.1450 0.0100 35 1 5.5304 2.9693 0.3214 36 1 4.7380 1.8382 1.4444 37 1 6.2801 2.6051 1.8942 38 1 7.8612 3.2456 -0.0546 39 1 9.3845 2.4322 -0.4861 40 1 7.9400 2.2140 -1.5029 41 1 11.2329 0.6935 3.3132 42 1 4.1230 -2.1431 0.0010 43 1 2.1444 -1.4064 -2.3797 44 1 1.4401 -2.4021 -4.5166 45 1 -0.6264 -5.4238 -2.5584 46 1 0.0202 -4.5326 -0.3581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = 23.269517 kcal Electronic energy + Delta-G solvation = -29116.624386 eV Core-core repulsion = 25166.146995 eV Total energy + Delta-G solvation = -3950.477392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51159 -40.13597 -39.16659 -37.56538 -35.68384 -33.45406 -32.52709 -32.05051 -31.49565 -30.72998 -29.95413 -27.48389 -26.61506 -25.28504 -24.31791 -23.72649 -22.95897 -22.24639 -21.02688 -19.48082 -18.52950 -17.57718 -16.99914 -16.75071 -16.27584 -16.01633 -15.82838 -15.56541 -15.18666 -14.87443 -14.54179 -14.26736 -14.16678 -13.92499 -13.85118 -13.68552 -13.23463 -13.10264 -12.92328 -12.68136 -12.45840 -12.33871 -12.25854 -12.08337 -11.81504 -11.60207 -11.45052 -11.17671 -10.83026 -10.73099 -10.47687 -9.85660 -9.83614 -9.52737 -9.45017 -9.29662 -9.17194 -9.10331 -8.81183 -8.64625 -7.82718 -6.20693 -4.22817 0.64652 0.81115 0.94699 1.02930 2.61292 3.14897 3.26883 3.34482 3.40484 3.52635 3.57198 3.85219 4.18563 4.34135 4.40812 4.45933 4.51386 4.63433 4.78158 4.85239 4.89232 4.97762 5.08414 5.17075 5.27901 5.29706 5.37229 5.45250 5.50158 5.55190 5.63676 5.72146 5.75913 5.78651 5.95408 6.12831 6.16205 6.17894 6.24476 6.25523 6.33597 6.47343 6.50933 6.84204 6.99245 7.18622 7.33232 7.54903 7.71384 8.01069 8.38998 8.72738 8.80752 9.40921 10.91292 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002805 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.732652 B = 9979.606310 C =10795.222889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.094 4.094 5 C -0.111 4.111 6 C 0.545 3.455 7 O -0.546 6.546 8 N -0.577 5.577 9 C 0.065 3.935 10 C 0.227 3.773 11 H 0.062 0.938 12 C -0.150 4.150 13 C -0.529 4.529 14 H 0.079 0.921 15 C 0.080 3.920 16 N -0.891 5.891 17 Si 0.871 3.129 18 H -0.271 1.271 19 H -0.261 1.261 20 H -0.286 1.286 21 C -0.062 4.062 22 C 0.058 3.942 23 O -0.245 6.245 24 C 0.166 3.834 25 C -0.245 4.245 26 C 0.135 3.865 27 N -0.509 5.509 28 C 0.130 3.870 29 C -0.203 4.203 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.026 0.974 41 H 0.267 0.733 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.679 -0.966 -8.730 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.332 3.668 7 O -0.425 6.425 8 N -0.307 5.307 9 C -0.078 4.078 10 C 0.126 3.874 11 H 0.080 0.920 12 C -0.208 4.208 13 C -0.567 4.567 14 H 0.097 0.903 15 C -0.124 4.124 16 N -0.528 5.528 17 Si 0.697 3.303 18 H -0.197 1.197 19 H -0.185 1.185 20 H -0.213 1.213 21 C -0.081 4.081 22 C 0.016 3.984 23 O -0.155 6.155 24 C 0.115 3.885 25 C -0.266 4.266 26 C -0.021 4.021 27 N -0.221 5.221 28 C -0.026 4.026 29 C -0.224 4.224 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.176 0.824 45 H 0.180 0.820 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.414 -1.890 -9.403 24.380 hybrid contribution 1.033 0.048 0.410 1.113 sum -21.381 -1.842 -8.993 23.268 Atomic orbital electron populations 1.20774 0.90354 1.02965 1.03032 1.20293 0.96847 0.92127 0.98022 1.20937 0.93851 0.97147 1.01862 1.22402 0.94413 0.99184 0.95156 1.20034 0.94446 0.93213 1.03731 1.18171 0.86120 0.83380 0.79113 1.90743 1.69270 1.33701 1.48818 1.48022 1.08965 1.17156 1.56569 1.22295 0.97335 0.89560 0.98625 1.19302 0.75102 0.95804 0.97196 0.91978 1.22298 1.01494 0.99751 0.97284 1.21086 0.99517 1.42054 0.94052 0.90279 1.24890 0.97229 0.94814 0.95421 1.69880 1.14978 1.45739 1.22215 0.86982 0.78872 0.81406 0.83003 1.19661 1.18534 1.21251 1.21410 0.92168 0.99191 0.95311 1.18239 0.89714 0.83554 1.06904 1.84424 1.68969 1.35438 1.26632 1.19585 0.91969 0.92471 0.84492 1.22359 1.06595 1.04518 0.93100 1.22602 0.91496 0.90746 0.97303 1.67733 1.12869 1.09885 1.31620 1.22639 0.95471 0.97924 0.86585 1.21524 1.02717 0.97336 1.00793 0.90258 0.90896 0.91673 0.84574 0.82438 0.92947 0.90803 0.89784 0.93187 0.92117 0.95506 0.92331 0.84008 0.84219 0.82397 0.81989 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.78 36.01 0.35 -0.58 16 2 C -0.07 -0.76 5.89 -104.38 -0.61 -1.37 16 3 C -0.12 -1.16 9.67 -39.67 -0.38 -1.54 16 4 C -0.09 -1.11 7.54 -39.17 -0.30 -1.40 16 5 C -0.11 -1.72 5.53 -104.99 -0.58 -2.30 16 6 C 0.54 11.00 7.51 -12.32 -0.09 10.91 16 7 O -0.55 -13.13 15.92 5.32 0.08 -13.05 16 8 N -0.58 -11.58 2.75 -176.37 -0.49 -12.07 16 9 C 0.06 0.99 7.66 59.85 0.46 1.44 16 10 C 0.23 5.32 2.19 -69.08 -0.15 5.17 16 11 H 0.06 1.62 4.66 -51.93 -0.24 1.38 16 12 C -0.15 -3.05 8.90 37.16 0.33 -2.72 16 13 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 14 H 0.08 2.25 6.81 -52.48 -0.36 1.90 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 17 Si 0.87 21.67 26.20 -169.99 -4.45 17.21 16 18 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -6.16 6.17 56.52 0.35 -5.82 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.06 -0.92 9.44 -39.02 -0.37 -1.29 16 22 C 0.06 0.73 4.00 -39.26 -0.16 0.58 16 23 O -0.24 -3.08 9.31 -3.08 -0.03 -3.10 16 24 C 0.17 1.90 5.68 -38.80 -0.22 1.68 16 25 C -0.24 -2.71 9.27 -39.29 -0.36 -3.07 16 26 C 0.13 1.39 11.17 -17.59 -0.20 1.19 16 27 N -0.51 -5.57 10.36 -13.33 -0.14 -5.71 16 28 C 0.13 1.18 11.17 -17.60 -0.20 0.99 16 29 C -0.20 -1.94 10.08 -39.29 -0.40 -2.33 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.16 1.64 4.29 -52.48 -0.23 1.41 16 35 H 0.05 0.64 7.17 -51.93 -0.37 0.27 16 36 H 0.07 0.96 5.00 -51.93 -0.26 0.70 16 37 H 0.08 1.41 6.58 -51.93 -0.34 1.07 16 38 H 0.05 0.92 7.49 -51.93 -0.39 0.53 16 39 H 0.06 1.28 6.77 -51.93 -0.35 0.93 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.14 2.29 7.83 -52.49 -0.41 1.88 16 43 H 0.14 1.56 6.87 -52.48 -0.36 1.20 16 44 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 45 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -33.72 373.59 -7.69 -41.41 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.80 Total: 2.45 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.27 Total: -7.06 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.15 Total: -43.50 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.06 Total: -16.15 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.45 Total: 17.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.72 -7.69 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.681 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds