Wall clock time and date at job start Tue Mar 31 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46711 * 2 1 4 4 C 1.53007 * 109.46967 * 163.24465 * 3 2 1 5 5 C 1.52998 * 109.47089 * 184.99845 * 4 3 2 6 6 C 1.53001 * 109.47364 * 283.24303 * 3 2 1 7 7 N 1.46501 * 109.47156 * 294.44312 * 6 3 2 8 8 C 1.46495 * 119.99838 * 276.28763 * 7 6 3 9 9 C 1.50703 * 109.47550 * 264.11304 * 8 7 6 10 10 H 1.07997 * 119.99234 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00063 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00258 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99866 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47264 * 60.00219 * 13 11 9 15 15 H 1.48506 * 109.47290 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47351 * 300.00216 * 13 11 9 17 17 C 1.34778 * 120.00058 * 96.28961 * 7 6 3 18 18 O 1.21592 * 120.00243 * 177.12248 * 17 7 6 19 19 N 1.34781 * 120.00102 * 357.40471 * 17 7 6 20 20 C 1.40192 * 120.00033 * 185.03243 * 19 17 7 21 21 C 1.38774 * 120.05132 * 32.91881 * 20 19 17 22 22 C 1.38154 * 119.97659 * 179.67593 * 21 20 19 23 23 C 1.38472 * 120.08503 * 0.62091 * 22 21 20 24 24 F 1.35093 * 119.95047 * 179.69885 * 23 22 21 25 25 C 1.38461 * 120.09983 * 359.67751 * 23 22 21 26 26 C 1.38296 * 120.02196 * 359.97438 * 25 23 22 27 27 F 1.35102 * 120.04535 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.46809 * 304.00164 * 1 2 3 29 29 H 1.08997 * 109.47254 * 64.00538 * 1 2 3 30 30 H 1.08999 * 109.46471 * 184.00334 * 1 2 3 31 31 H 1.09005 * 109.47185 * 240.00328 * 2 1 3 32 32 H 1.08999 * 109.47760 * 120.00061 * 2 1 3 33 33 H 1.08999 * 109.47080 * 43.24886 * 3 2 1 34 34 H 1.09002 * 109.46870 * 305.00257 * 4 3 2 35 35 H 1.08996 * 109.46666 * 65.00139 * 4 3 2 36 36 H 1.09000 * 109.47253 * 300.00367 * 5 4 3 37 37 H 1.09001 * 109.46917 * 59.99869 * 5 4 3 38 38 H 1.08995 * 109.47201 * 179.97438 * 5 4 3 39 39 H 1.09000 * 109.47202 * 174.43665 * 6 3 2 40 40 H 1.09002 * 109.46729 * 54.44289 * 6 3 2 41 41 H 1.09002 * 109.47040 * 24.11605 * 8 7 6 42 42 H 1.09003 * 109.46739 * 144.11397 * 8 7 6 43 43 H 0.97008 * 120.00275 * 179.97438 * 12 11 9 44 44 H 0.97001 * 119.99776 * 5.02151 * 19 17 7 45 45 H 1.07999 * 120.00876 * 359.97438 * 21 20 19 46 46 H 1.08004 * 119.95777 * 180.29136 * 22 21 20 47 47 H 1.08003 * 119.98675 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5123 1.4631 0.4159 5 6 3.9879 2.9122 0.5368 6 6 1.8984 2.0336 -1.4041 7 7 2.7865 1.3209 -2.3258 8 6 4.1962 1.7057 -2.4293 9 6 4.3750 2.6518 -3.5886 10 1 3.5235 2.9381 -4.1880 11 6 5.6252 3.1526 -3.8832 12 7 6.6620 2.8043 -3.1528 13 14 5.8467 4.3259 -5.3197 14 1 5.0171 5.5381 -5.1013 15 1 7.2758 4.7159 -5.4246 16 1 5.4234 3.6562 -6.5757 17 6 2.3065 0.3111 -3.0786 18 8 3.0302 -0.2459 -3.8813 19 7 1.0228 -0.0774 -2.9456 20 6 0.5519 -1.1941 -3.6502 21 6 1.4002 -2.2616 -3.9081 22 6 0.9326 -3.3643 -4.5967 23 6 -0.3782 -3.4003 -5.0415 24 9 -0.8309 -4.4773 -5.7199 25 6 -1.2259 -2.3344 -4.7915 26 6 -0.7643 -1.2316 -4.0962 27 9 -1.5912 -0.1915 -3.8516 28 1 -0.3633 0.5747 0.8520 29 1 -0.3633 0.4504 -0.9237 30 1 -0.3632 -1.0252 0.0717 31 1 1.8934 -0.5138 -0.8901 32 1 1.8935 -0.5138 0.8899 33 1 1.4553 2.0346 0.7041 34 1 3.6252 0.9621 1.3773 35 1 4.1092 0.9462 -0.3355 36 1 3.8749 3.4131 -0.4247 37 1 3.3909 3.4291 1.2881 38 1 5.0366 2.9268 0.8334 39 1 2.1683 3.0894 -1.3828 40 1 0.8666 1.9291 -1.7399 41 1 4.5071 2.1975 -1.5076 42 1 4.8049 0.8157 -2.5894 43 1 7.5418 3.1564 -3.3603 44 1 0.4248 0.4156 -2.3623 45 1 2.4243 -2.2325 -3.5662 46 1 1.5919 -4.1969 -4.7931 47 1 -2.2481 -2.3647 -5.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084727478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:44 Heat of formation + Delta-G solvation = -85.963951 kcal Electronic energy + Delta-G solvation = -31398.731467 eV Core-core repulsion = 27025.120922 eV Total energy + Delta-G solvation = -4373.610545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.02639 -48.97197 -40.59981 -38.68821 -37.14261 -34.75873 -33.72991 -32.44839 -31.96708 -30.85568 -29.12693 -28.27157 -26.38204 -25.06655 -23.71562 -23.15009 -22.11696 -21.69397 -20.28345 -19.31219 -18.47201 -17.95635 -16.98937 -16.74846 -16.66705 -15.99869 -15.69101 -15.51521 -15.31951 -15.08661 -14.58631 -14.54766 -14.34138 -14.15435 -13.87565 -13.62370 -13.28610 -13.15208 -12.74658 -12.52029 -12.46192 -12.30263 -12.12389 -12.05862 -11.58120 -11.52528 -11.37631 -11.15764 -11.03424 -10.80268 -10.61147 -10.33946 -10.31299 -10.16813 -10.08336 -10.05411 -9.57266 -9.40548 -9.01993 -8.40952 -8.05387 -7.64160 -6.04764 -4.07949 0.92070 1.01246 2.96322 3.28365 3.32045 3.36489 3.41150 3.80544 3.86030 4.24450 4.33964 4.46848 4.57817 4.80809 4.88846 4.94971 5.00178 5.12920 5.29626 5.31293 5.41066 5.43544 5.61871 5.70326 5.71937 5.75470 5.79250 5.85154 5.95390 6.02465 6.07382 6.12030 6.15906 6.18858 6.29595 6.37078 6.45721 6.49081 6.63965 6.75783 6.83999 6.93615 7.32712 7.44498 7.57095 7.92209 8.22598 8.47026 8.90506 9.13085 9.56594 11.02774 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.004118 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.170387 B = 6797.797216 C = 8413.767696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.105 4.105 4 C -0.124 4.124 5 C -0.155 4.155 6 C 0.110 3.890 7 N -0.596 5.596 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.054 0.946 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.697 3.303 18 O -0.562 6.562 19 N -0.694 5.694 20 C 0.150 3.850 21 C -0.070 4.070 22 C -0.137 4.137 23 C 0.096 3.904 24 F -0.137 7.137 25 C -0.169 4.169 26 C 0.085 3.915 27 F -0.133 7.133 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.263 0.737 44 H 0.406 0.594 45 H 0.160 0.840 46 H 0.144 0.856 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 -7.861 6.502 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.125 4.125 4 C -0.161 4.161 5 C -0.212 4.212 6 C -0.014 4.014 7 N -0.330 5.330 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.073 0.927 11 C -0.138 4.138 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.400 3.600 18 O -0.438 6.438 19 N -0.348 5.348 20 C 0.052 3.948 21 C -0.090 4.090 22 C -0.157 4.157 23 C 0.075 3.925 24 F -0.116 7.116 25 C -0.190 4.190 26 C 0.062 3.938 27 F -0.112 7.112 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.247 0.753 45 H 0.177 0.823 46 H 0.161 0.839 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.707 -8.106 5.989 17.014 hybrid contribution -0.469 1.044 -0.703 1.344 sum -14.176 -7.062 5.286 16.697 Atomic orbital electron populations 1.21871 0.96389 1.01533 1.00973 1.21739 0.95121 0.97110 1.02834 1.21710 0.97545 0.96151 0.97099 1.21723 0.95288 0.97917 1.01195 1.21888 1.00693 0.96370 1.02281 1.21555 0.92937 0.98078 0.88848 1.47569 1.13152 1.32491 1.39829 1.19653 0.72882 0.96298 0.98296 1.21412 0.93964 1.26781 1.14169 0.92729 1.24858 0.95683 0.96724 0.96561 1.69903 0.99569 1.44557 1.39382 0.86616 0.76924 0.81065 0.83149 1.20352 1.21230 1.20285 1.15902 0.80616 0.81635 0.81893 1.90922 1.56886 1.58300 1.37706 1.43388 1.12607 1.30178 1.48607 1.17602 0.91345 0.88841 0.97033 1.21093 1.01123 0.89377 0.97440 1.21121 0.94016 1.00145 1.00378 1.17203 0.92877 0.84765 0.97637 1.91496 1.89512 1.52935 1.77662 1.20737 1.01716 0.93021 1.03476 1.17022 0.88051 0.86520 1.02200 1.91490 1.71178 1.55874 1.92618 0.92366 0.93663 0.92703 0.91235 0.91843 0.90663 0.92975 0.89987 0.90844 0.93839 0.92757 0.89464 0.92489 0.91963 0.94495 0.92729 0.75294 0.82266 0.83857 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.37 37.16 0.35 -1.14 16 2 C -0.13 -1.56 4.95 -26.73 -0.13 -1.69 16 3 C -0.11 -1.34 2.17 -90.61 -0.20 -1.54 16 4 C -0.12 -1.80 4.82 -26.73 -0.13 -1.93 16 5 C -0.16 -2.31 8.66 37.16 0.32 -1.99 16 6 C 0.11 1.67 4.88 -4.04 -0.02 1.65 16 7 N -0.60 -11.66 2.02 -180.80 -0.37 -12.02 16 8 C 0.25 5.93 3.54 -5.19 -0.02 5.92 16 9 C -0.52 -14.31 9.33 -34.44 -0.32 -14.64 16 10 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 13 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.70 13.93 6.64 -86.91 -0.58 13.36 16 18 O -0.56 -13.44 13.71 5.28 0.07 -13.37 16 19 N -0.69 -10.98 3.83 -14.14 -0.05 -11.04 16 20 C 0.15 2.25 6.30 -83.54 -0.53 1.72 16 21 C -0.07 -1.01 8.66 -39.41 -0.34 -1.35 16 22 C -0.14 -1.68 10.02 -39.53 -0.40 -2.08 16 23 C 0.10 1.15 7.30 -39.41 -0.29 0.87 16 24 F -0.14 -1.64 17.26 2.25 0.04 -1.60 16 25 C -0.17 -1.99 10.00 -39.48 -0.39 -2.38 16 26 C 0.08 1.13 7.31 -39.27 -0.29 0.84 16 27 F -0.13 -1.76 16.93 2.25 0.04 -1.73 16 28 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.04 0.45 5.06 -51.93 -0.26 0.19 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.99 5.11 -51.93 -0.27 0.72 16 32 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 33 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16 34 H 0.05 0.67 8.05 -51.93 -0.42 0.26 16 35 H 0.08 1.45 5.34 -51.93 -0.28 1.17 16 36 H 0.07 1.27 5.32 -51.93 -0.28 0.99 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.37 6.82 -51.93 -0.35 1.02 16 40 H 0.06 0.75 5.34 -51.93 -0.28 0.48 16 41 H 0.06 1.44 3.48 -51.93 -0.18 1.26 16 42 H 0.04 1.02 7.65 -51.93 -0.40 0.62 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.41 5.57 3.14 -40.82 -0.13 5.44 16 45 H 0.16 2.58 6.38 -52.49 -0.34 2.24 16 46 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 47 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -30.19 369.66 -8.12 -38.31 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.08 Total: 6.73 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.05 Total: -2.72 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.32 Total: -47.84 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.19 -8.12 -38.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084727478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.655 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds