Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45190 * 109.47278 * 2 1 4 4 C 1.34738 * 117.00457 * 179.97438 * 3 2 1 5 5 O 1.21499 * 119.99585 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.00716 * 179.97438 * 4 3 2 7 7 C 1.39773 * 120.08466 * 180.02562 * 6 4 3 8 8 C 1.37693 * 119.91725 * 180.02562 * 7 6 4 9 9 C 1.39089 * 120.08457 * 359.97438 * 8 7 6 10 10 N 1.39728 * 119.92158 * 179.97438 * 9 8 7 11 11 C 1.36904 * 124.87492 * 65.02007 * 10 9 8 12 12 C 1.50703 * 125.42939 * 0.02562 * 11 10 9 13 13 C 1.34544 * 109.13920 * 179.73858 * 11 10 9 14 14 C 1.46571 * 106.50583 * 0.26674 * 13 11 10 15 15 C 1.47263 * 126.99784 * 180.02562 * 14 13 11 16 16 O 1.21899 * 120.00093 * 179.97438 * 15 14 13 17 17 C 1.41617 * 120.00106 * 359.97438 * 15 14 13 18 18 H 1.08003 * 119.99582 * 0.02562 * 17 15 14 19 19 C 1.40305 * 120.00355 * 179.97438 * 17 15 14 20 20 N 1.30552 * 119.99615 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00519 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46958 * 90.00314 * 21 19 17 23 23 H 1.48499 * 109.47499 * 210.00333 * 21 19 17 24 24 H 1.48504 * 109.47040 * 330.01025 * 21 19 17 25 25 C 1.34922 * 124.87098 * 245.23997 * 10 9 8 26 26 C 1.50708 * 125.94790 * 359.94754 * 25 10 9 27 27 C 1.39099 * 120.16126 * 0.26041 * 9 8 7 28 28 C 1.37686 * 120.07851 * 359.48359 * 27 9 8 29 29 H 1.09001 * 109.47331 * 300.00369 * 1 2 3 30 30 H 1.09002 * 109.47332 * 59.99944 * 1 2 3 31 31 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46924 * 239.99898 * 2 1 3 33 33 H 1.09003 * 109.46602 * 119.99920 * 2 1 3 34 34 H 1.08000 * 120.04478 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.95909 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47152 * 269.71609 * 12 11 10 37 37 H 1.09001 * 109.46980 * 149.71709 * 12 11 10 38 38 H 1.09004 * 109.47113 * 29.71690 * 12 11 10 39 39 H 1.08001 * 126.74241 * 180.30304 * 13 11 10 40 40 H 0.97003 * 119.99977 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47021 * 270.33175 * 26 25 10 42 42 H 1.08996 * 109.46970 * 30.33804 * 26 25 10 43 43 H 1.08998 * 109.46487 * 150.33504 * 26 25 10 44 44 H 1.07998 * 119.95922 * 179.72159 * 27 9 8 45 45 H 1.08006 * 120.03869 * 180.23314 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0899 0.5819 0.0005 6 6 3.9137 2.9086 0.0000 7 6 5.2991 3.0937 0.0000 8 6 5.8218 4.3676 0.0000 9 6 4.9730 5.4695 -0.0005 10 7 5.5071 6.7606 0.0001 11 6 6.2454 7.3028 -1.0174 12 6 6.6055 6.6048 -2.3035 13 6 6.5928 8.5604 -0.6886 14 6 6.0296 8.8141 0.6406 15 6 6.1394 10.0539 1.4276 16 8 5.6172 10.1263 2.5268 17 6 6.8515 11.1620 0.9077 18 1 7.3138 11.0980 -0.0663 19 6 6.9557 12.3434 1.6573 20 7 6.3964 12.4210 2.8344 21 14 7.8956 13.8049 0.9718 22 1 6.9692 14.6709 0.1991 23 1 8.4841 14.5840 2.0907 24 1 8.9807 13.3217 0.0805 25 6 5.3727 7.6505 1.0053 26 6 4.6306 7.4211 2.2968 27 6 3.5938 5.2892 0.0044 28 6 3.0639 4.0184 -0.0009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9589 2.2387 0.0008 35 1 6.8922 4.5114 -0.0004 36 1 7.5552 6.0842 -2.1808 37 1 6.6949 7.3401 -3.1032 38 1 5.8268 5.8853 -2.5568 39 1 7.1723 9.2479 -1.2869 40 1 6.4687 13.2376 3.3529 41 1 3.5889 7.7176 2.1748 42 1 4.6793 6.3647 2.5610 43 1 5.0872 8.0150 3.0885 44 1 2.9377 6.1471 0.0086 45 1 1.9928 3.8792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085396868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -58.583479 kcal Electronic energy + Delta-G solvation = -28362.642020 eV Core-core repulsion = 24310.896554 eV Total energy + Delta-G solvation = -4051.745466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30335 -40.68784 -38.67187 -36.87820 -36.22433 -33.07400 -32.65749 -32.18394 -31.81261 -31.26148 -29.24810 -28.71120 -26.78770 -24.74788 -23.93326 -23.29506 -22.92598 -21.62752 -20.90838 -19.62600 -18.47540 -18.15678 -17.24950 -16.89763 -16.46073 -15.77025 -15.68985 -15.09177 -14.88332 -14.57550 -14.29377 -14.04481 -13.81937 -13.48545 -13.43757 -13.17220 -13.08600 -12.84507 -12.74940 -12.72733 -12.36493 -12.26450 -12.04997 -11.90275 -11.82821 -11.71918 -11.62985 -11.25378 -11.14304 -10.92288 -10.88205 -10.85940 -10.69162 -10.27147 -10.05184 -9.38988 -9.32039 -8.86401 -7.80361 -7.32969 -7.12520 -6.17116 -4.74167 0.24544 1.01744 2.13505 2.26041 2.65289 3.07296 3.14959 3.19263 3.23129 3.30958 3.40661 4.10376 4.28354 4.51465 4.53288 4.55640 4.58835 4.64138 4.84546 4.88836 5.02454 5.05162 5.23556 5.35149 5.36289 5.46657 5.54173 5.63453 5.65542 5.73718 5.78690 5.85676 5.91579 5.96967 5.98523 6.05727 6.08408 6.26128 6.28928 6.36657 6.59492 6.80346 6.83878 6.99751 7.35805 7.40624 7.70462 7.78959 7.98821 8.22743 8.93865 9.04597 10.46105 10.70870 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002180 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.290086 B =12839.629475 C =13464.422692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.514 3.486 5 O -0.508 6.508 6 C -0.136 4.136 7 C -0.040 4.040 8 C -0.128 4.128 9 C 0.178 3.822 10 N -0.417 5.417 11 C -0.016 4.016 12 C -0.076 4.076 13 C -0.147 4.147 14 C -0.173 4.173 15 C 0.420 3.580 16 O -0.548 6.548 17 C -0.514 4.514 18 H 0.070 0.930 19 C 0.080 3.920 20 N -0.741 5.741 21 Si 0.903 3.097 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.262 1.262 25 C 0.042 3.958 26 C -0.076 4.076 27 C -0.128 4.128 28 C -0.047 4.047 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.142 0.858 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.103 0.897 44 H 0.140 0.860 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -20.612 -8.206 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.360 3.640 5 O -0.397 6.397 6 C -0.137 4.137 7 C -0.059 4.059 8 C -0.148 4.148 9 C 0.087 3.913 10 N -0.096 5.096 11 C -0.120 4.120 12 C -0.133 4.133 13 C -0.171 4.171 14 C -0.180 4.180 15 C 0.316 3.684 16 O -0.438 6.438 17 C -0.546 4.546 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.370 5.370 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.066 4.066 26 C -0.134 4.134 27 C -0.148 4.148 28 C -0.066 4.066 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.160 0.840 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.877 -21.099 -7.530 23.747 hybrid contribution 0.587 0.541 -0.571 0.981 sum -7.290 -20.558 -8.101 23.268 Atomic orbital electron populations 1.21821 0.92389 1.03105 1.03733 1.23063 0.95477 0.79789 1.02754 1.86549 1.23707 1.32627 1.84183 1.21069 0.80623 0.89752 0.72595 1.90840 1.60408 1.42441 1.46051 1.19116 0.94008 0.90020 1.10585 1.21111 0.93248 0.97372 0.94167 1.21242 1.00741 0.90874 1.01894 1.18060 0.92120 0.84470 0.96629 1.40950 1.43837 1.08999 1.15787 1.20157 1.04140 0.95487 0.92167 1.20228 1.00748 0.99752 0.92599 1.21944 1.03939 0.94202 0.97049 1.22742 1.02466 0.96658 0.96146 1.17359 0.81670 0.83867 0.85510 1.90475 1.48098 1.83549 1.21693 1.20785 1.31923 0.97889 1.03959 0.91190 1.25981 0.94328 0.99730 0.94144 1.69981 1.31777 1.26200 1.09057 0.86435 0.80352 0.81080 0.79378 1.19565 1.20348 1.18631 1.20997 1.04944 0.89412 0.91215 1.20358 0.99243 1.00383 0.93372 1.21320 0.93917 0.98093 1.01437 1.21330 1.00446 0.90642 0.94140 0.91303 0.91348 0.90105 0.91094 0.91059 0.83857 0.84240 0.91784 0.90480 0.92658 0.84032 0.91819 0.91804 0.93692 0.87889 0.84240 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.46 9.46 -40.60 -0.38 -3.85 16 4 C 0.51 5.88 7.89 34.51 0.27 6.15 16 5 O -0.51 -6.83 16.13 -19.27 -0.31 -7.14 16 6 C -0.14 -1.50 5.87 -104.96 -0.62 -2.12 16 7 C -0.04 -0.44 9.58 -39.21 -0.38 -0.82 16 8 C -0.13 -1.56 9.59 -39.46 -0.38 -1.94 16 9 C 0.18 2.52 4.44 -83.62 -0.37 2.15 16 10 N -0.42 -7.31 2.73 -52.02 -0.14 -7.45 16 11 C -0.02 -0.27 6.76 -81.63 -0.55 -0.82 16 12 C -0.08 -0.96 9.81 36.01 0.35 -0.61 16 13 C -0.15 -3.01 10.39 -37.53 -0.39 -3.40 16 14 C -0.17 -4.19 6.30 -102.77 -0.65 -4.83 16 15 C 0.42 12.08 6.92 -34.63 -0.24 11.84 16 16 O -0.55 -17.21 13.44 5.01 0.07 -17.14 16 17 C -0.51 -14.47 9.04 -37.52 -0.34 -14.81 16 18 H 0.07 1.82 7.03 -52.48 -0.37 1.45 16 19 C 0.08 2.20 5.50 -17.32 -0.10 2.11 16 20 N -0.74 -21.54 11.73 55.56 0.65 -20.89 16 21 Si 0.90 19.68 29.56 -169.99 -5.03 14.66 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 25 C 0.04 0.88 6.85 -81.13 -0.56 0.33 16 26 C -0.08 -1.47 9.29 36.01 0.33 -1.13 16 27 C -0.13 -1.58 9.57 -39.46 -0.38 -1.96 16 28 C -0.05 -0.49 9.61 -39.21 -0.38 -0.86 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 39 H 0.14 2.72 7.56 -52.49 -0.40 2.32 16 40 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.04 0.74 7.77 -51.93 -0.40 0.33 16 43 H 0.10 2.29 6.53 -51.93 -0.34 1.95 16 44 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.14 1.20 7.60 -52.48 -0.40 0.80 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -34.64 389.67 -9.08 -43.72 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.07 Total: 2.63 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.74 Total: -10.40 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.51 Total: -28.34 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.63 Total: -28.14 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.64 -9.08 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085396868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.862 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds