Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45190 * 109.47278 * 2 1 4 4 C 1.34738 * 117.00457 * 179.97438 * 3 2 1 5 5 O 1.21499 * 119.99585 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.00716 * 179.97438 * 4 3 2 7 7 C 1.39773 * 120.08466 * 180.02562 * 6 4 3 8 8 C 1.37693 * 119.91725 * 180.02562 * 7 6 4 9 9 C 1.39089 * 120.08457 * 359.97438 * 8 7 6 10 10 N 1.39728 * 119.92158 * 179.97438 * 9 8 7 11 11 C 1.36904 * 124.87492 * 65.02007 * 10 9 8 12 12 C 1.50703 * 125.42939 * 0.02562 * 11 10 9 13 13 C 1.34544 * 109.13920 * 179.73858 * 11 10 9 14 14 C 1.46571 * 106.50583 * 0.26674 * 13 11 10 15 15 C 1.47263 * 126.99784 * 180.02562 * 14 13 11 16 16 O 1.21899 * 120.00093 * 179.97438 * 15 14 13 17 17 C 1.41617 * 120.00106 * 359.97438 * 15 14 13 18 18 H 1.08003 * 119.99582 * 0.02562 * 17 15 14 19 19 C 1.40305 * 120.00355 * 179.97438 * 17 15 14 20 20 N 1.30552 * 119.99615 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00519 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46958 * 90.00314 * 21 19 17 23 23 H 1.48499 * 109.47499 * 210.00333 * 21 19 17 24 24 H 1.48504 * 109.47040 * 330.01025 * 21 19 17 25 25 C 1.34922 * 124.87098 * 245.23997 * 10 9 8 26 26 C 1.50708 * 125.94790 * 359.94754 * 25 10 9 27 27 C 1.39099 * 120.16126 * 0.26041 * 9 8 7 28 28 C 1.37686 * 120.07851 * 359.48359 * 27 9 8 29 29 H 1.09001 * 109.47331 * 300.00369 * 1 2 3 30 30 H 1.09002 * 109.47332 * 59.99944 * 1 2 3 31 31 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46924 * 239.99898 * 2 1 3 33 33 H 1.09003 * 109.46602 * 119.99920 * 2 1 3 34 34 H 1.08000 * 120.04478 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.95909 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47152 * 269.71609 * 12 11 10 37 37 H 1.09001 * 109.46980 * 149.71709 * 12 11 10 38 38 H 1.09004 * 109.47113 * 29.71690 * 12 11 10 39 39 H 1.08001 * 126.74241 * 180.30304 * 13 11 10 40 40 H 0.97003 * 119.99977 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47021 * 270.33175 * 26 25 10 42 42 H 1.08996 * 109.46970 * 30.33804 * 26 25 10 43 43 H 1.08998 * 109.46487 * 150.33504 * 26 25 10 44 44 H 1.07998 * 119.95922 * 179.72159 * 27 9 8 45 45 H 1.08006 * 120.03869 * 180.23314 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0899 0.5819 0.0005 6 6 3.9137 2.9086 0.0000 7 6 5.2991 3.0937 0.0000 8 6 5.8218 4.3676 0.0000 9 6 4.9730 5.4695 -0.0005 10 7 5.5071 6.7606 0.0001 11 6 6.2454 7.3028 -1.0174 12 6 6.6055 6.6048 -2.3035 13 6 6.5928 8.5604 -0.6886 14 6 6.0296 8.8141 0.6406 15 6 6.1394 10.0539 1.4276 16 8 5.6172 10.1263 2.5268 17 6 6.8515 11.1620 0.9077 18 1 7.3138 11.0980 -0.0663 19 6 6.9557 12.3434 1.6573 20 7 6.3964 12.4210 2.8344 21 14 7.8956 13.8049 0.9718 22 1 6.9692 14.6709 0.1991 23 1 8.4841 14.5840 2.0907 24 1 8.9807 13.3217 0.0805 25 6 5.3727 7.6505 1.0053 26 6 4.6306 7.4211 2.2968 27 6 3.5938 5.2892 0.0044 28 6 3.0639 4.0184 -0.0009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9589 2.2387 0.0008 35 1 6.8922 4.5114 -0.0004 36 1 7.5552 6.0842 -2.1808 37 1 6.6949 7.3401 -3.1032 38 1 5.8268 5.8853 -2.5568 39 1 7.1723 9.2479 -1.2869 40 1 6.4687 13.2376 3.3529 41 1 3.5889 7.7176 2.1748 42 1 4.6793 6.3647 2.5610 43 1 5.0872 8.0150 3.0885 44 1 2.9377 6.1471 0.0086 45 1 1.9928 3.8792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085396868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = -76.707116 kcal Electronic energy + Delta-G solvation = -28363.427920 eV Core-core repulsion = 24310.896554 eV Total energy + Delta-G solvation = -4052.531366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61210 -41.62673 -39.71876 -38.31989 -37.69868 -34.72255 -34.24171 -33.43282 -32.65324 -32.19792 -30.58187 -30.08331 -28.70054 -25.82188 -25.42250 -24.15117 -23.79198 -22.97127 -22.08386 -21.08991 -19.84362 -19.21769 -18.29069 -18.09677 -17.64282 -17.47977 -16.85627 -16.77424 -15.82009 -15.46558 -15.40728 -15.22778 -14.96152 -14.87615 -14.72203 -14.55864 -14.13441 -14.01900 -13.84058 -13.71895 -13.62782 -13.58146 -13.40258 -13.12650 -13.03570 -12.95058 -12.91315 -12.70277 -12.53357 -12.43557 -12.17693 -12.09234 -11.91364 -11.76057 -11.55771 -10.92783 -10.38164 -10.28330 -9.47586 -9.30458 -8.73196 -8.24151 -6.93838 -0.72220 0.12089 0.96238 1.27245 1.39033 1.41946 1.50136 1.55702 1.66294 1.83670 2.25750 2.47593 2.61788 3.46350 3.65917 3.67685 3.76802 3.86352 4.01598 4.03343 4.05743 4.06121 4.15071 4.29654 4.34534 4.44680 4.49815 4.57834 4.68814 4.70619 4.78240 4.80994 4.89379 4.93545 5.00535 5.03409 5.07480 5.13379 5.13848 5.14388 5.24158 5.29213 5.37710 5.40356 5.49584 6.05953 6.11807 6.21731 6.56117 6.59001 6.81054 6.97879 8.39323 8.61420 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002180 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.290086 B =12839.629475 C =13464.422692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.517 3.483 5 O -0.531 6.531 6 C -0.133 4.133 7 C -0.034 4.034 8 C -0.121 4.121 9 C 0.147 3.853 10 N -0.406 5.406 11 C 0.010 3.990 12 C -0.072 4.072 13 C -0.177 4.177 14 C -0.232 4.232 15 C 0.397 3.603 16 O -0.594 6.594 17 C -0.544 4.544 18 H 0.082 0.918 19 C 0.024 3.976 20 N -0.791 5.791 21 Si 0.992 3.008 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.250 1.250 25 C 0.045 3.955 26 C -0.067 4.067 27 C -0.128 4.128 28 C -0.032 4.032 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.279 0.721 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.138 0.862 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 -22.708 -10.462 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.270 6.270 4 C 0.364 3.636 5 O -0.422 6.422 6 C -0.134 4.134 7 C -0.052 4.052 8 C -0.140 4.140 9 C 0.057 3.943 10 N -0.083 5.083 11 C -0.095 4.095 12 C -0.130 4.130 13 C -0.200 4.200 14 C -0.239 4.239 15 C 0.297 3.703 16 O -0.489 6.489 17 C -0.576 4.576 18 H 0.100 0.900 19 C -0.194 4.194 20 N -0.420 5.420 21 Si 0.811 3.189 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.173 1.173 25 C -0.066 4.066 26 C -0.125 4.125 27 C -0.147 4.147 28 C -0.050 4.050 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.156 0.844 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.144 -23.237 -9.815 26.507 hybrid contribution 0.542 0.935 0.117 1.087 sum -7.602 -22.302 -9.698 25.480 Atomic orbital electron populations 1.21843 0.90402 1.04466 1.03799 1.23356 0.97016 0.78594 1.02910 1.86547 1.22647 1.34207 1.83605 1.21078 0.81070 0.89457 0.72024 1.90837 1.61040 1.43105 1.47205 1.19258 0.94235 0.90207 1.09715 1.21225 0.93520 0.97192 0.93279 1.21234 1.00835 0.90553 1.01395 1.18295 0.93169 0.83067 0.99762 1.40988 1.42845 1.09804 1.14628 1.20787 1.01302 0.94391 0.93064 1.20387 1.02174 1.00250 0.90143 1.21963 1.05834 0.96123 0.96111 1.22403 1.06595 0.96592 0.98324 1.17986 0.80932 0.85986 0.85390 1.90413 1.49931 1.84949 1.23569 1.21243 1.32625 0.98899 1.04813 0.90024 1.27198 0.94928 1.03159 0.94123 1.70122 1.33354 1.27696 1.10877 0.85108 0.78826 0.76129 0.78852 1.18352 1.19267 1.17304 1.21004 1.03968 0.89408 0.92192 1.20223 0.98989 1.01456 0.91798 1.21335 0.93111 0.98901 1.01373 1.21482 1.01550 0.89423 0.92567 0.91325 0.91146 0.88120 0.90857 0.91076 0.82521 0.83646 0.89645 0.88931 0.91064 0.83744 0.91085 0.91050 0.90709 0.91584 0.84410 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 71.98 0.74 -0.32 16 2 C 0.05 0.68 6.19 71.98 0.45 1.12 16 3 O -0.35 -6.00 9.46 -56.49 -0.53 -6.53 16 4 C 0.52 10.50 7.89 70.27 0.55 11.05 16 5 O -0.53 -13.13 16.13 19.84 0.32 -12.81 16 6 C -0.13 -2.54 5.87 -20.09 -0.12 -2.66 16 7 C -0.03 -0.64 9.58 22.51 0.22 -0.42 16 8 C -0.12 -2.63 9.59 22.35 0.21 -2.42 16 9 C 0.15 3.85 4.44 38.29 0.17 4.02 16 10 N -0.41 -13.92 2.73 -318.49 -0.87 -14.79 16 11 C 0.01 0.34 6.76 40.92 0.28 0.62 16 12 C -0.07 -1.61 9.81 71.24 0.70 -0.91 16 13 C -0.18 -7.40 10.39 23.60 0.25 -7.15 16 14 C -0.23 -11.81 6.30 -18.67 -0.12 -11.93 16 15 C 0.40 24.44 6.92 25.48 0.18 24.61 16 16 O -0.59 -40.20 13.44 -4.99 -0.07 -40.27 16 17 C -0.54 -32.20 9.04 23.61 0.21 -31.99 16 18 H 0.08 4.43 7.03 -2.91 -0.02 4.41 16 19 C 0.02 1.35 5.50 85.39 0.47 1.82 16 20 N -0.79 -48.24 11.73 21.88 0.26 -47.98 16 21 Si 0.99 41.17 29.56 68.60 2.03 43.19 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 25 C 0.04 1.93 6.85 42.15 0.29 2.22 16 26 C -0.07 -2.68 9.29 71.24 0.66 -2.02 16 27 C -0.13 -2.86 9.57 22.35 0.21 -2.65 16 28 C -0.03 -0.56 9.61 22.51 0.22 -0.35 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.16 2.60 7.64 -2.91 -0.02 2.58 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.40 7.75 -2.38 -0.02 1.38 16 39 H 0.14 5.71 7.56 -2.91 -0.02 5.69 16 40 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.07 2.45 7.77 -2.39 -0.02 2.43 16 43 H 0.07 3.15 6.53 -2.39 -0.02 3.14 16 44 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 45 H 0.17 2.18 7.60 -2.91 -0.02 2.16 16 Total: -1.00 -81.27 389.67 7.71 -73.56 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.01 Total: 22.99 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 5.57 Total: -17.36 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.61 Total: -62.77 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -0.28 Total: -59.62 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -81.27 7.71 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085396868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.144 kcal (2) G-P(sol) polarization free energy of solvation -81.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds