Wall clock time and date at job start Tue Mar 31 2020 05:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 S 1.81003 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.76196 * 99.99843 * 180.02562 * 10 9 7 12 12 N 1.32445 * 119.15975 * 179.73686 * 11 10 9 13 13 C 1.33075 * 120.60451 * 179.72226 * 12 11 10 14 14 C 1.48312 * 120.50487 * 180.24730 * 13 12 11 15 15 C 1.39374 * 120.12369 * 180.02562 * 14 13 12 16 16 C 1.38009 * 119.87313 * 179.70046 * 15 14 13 17 17 C 1.38325 * 120.12361 * 0.57300 * 16 15 14 18 18 C 1.38335 * 120.25273 * 359.72493 * 17 16 15 19 19 C 1.38006 * 120.12458 * 359.97354 * 18 17 16 20 20 C 1.39761 * 118.98927 * 0.53538 * 13 12 11 21 21 C 1.38350 * 118.46175 * 359.73420 * 20 13 12 22 22 C 1.50702 * 120.35630 * 180.02562 * 21 20 13 23 23 F 1.39899 * 109.47341 * 184.97800 * 22 21 20 24 24 F 1.39897 * 109.46910 * 304.97497 * 22 21 20 25 25 F 1.39903 * 109.46926 * 64.97663 * 22 21 20 26 26 N 1.32364 * 119.29397 * 0.02562 * 21 20 13 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 29 29 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 30 30 H 1.08004 * 120.06765 * 359.97438 * 15 14 13 31 31 H 1.07997 * 119.93853 * 180.32134 * 16 15 14 32 32 H 1.07999 * 119.87572 * 179.74357 * 17 16 15 33 33 H 1.08005 * 119.93721 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.06347 * 180.02562 * 19 18 17 35 35 H 1.08001 * 120.77233 * 179.75951 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 16 2.4272 -3.8749 -0.0029 11 6 1.3071 -5.2350 -0.0049 12 7 1.7897 -6.4684 -0.0115 13 6 0.9699 -7.5167 -0.0077 14 6 1.5127 -8.8969 -0.0096 15 6 0.6468 -9.9890 -0.0060 16 6 1.1575 -11.2711 -0.0141 17 6 2.5259 -11.4734 -0.0137 18 6 3.3901 -10.3932 -0.0109 19 6 2.8906 -9.1066 -0.0092 20 6 -0.4103 -7.2971 -0.0079 21 6 -0.8705 -5.9924 -0.0066 22 6 -2.3501 -5.7066 -0.0062 23 9 -2.5589 -4.3279 -0.1192 24 9 -2.9514 -6.3594 -1.0876 25 9 -2.9137 -6.1672 1.1886 26 7 0.0028 -4.9977 -0.0056 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6247 -2.5562 -0.8920 30 1 -0.4218 -9.8324 -0.0014 31 1 0.4875 -12.1182 -0.0166 32 1 2.9212 -12.4784 -0.0158 33 1 4.4576 -10.5569 -0.0102 34 1 3.5662 -8.2640 -0.0075 35 1 -1.1018 -8.1268 -0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085565104.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:13 Heat of formation + Delta-G solvation = -96.029081 kcal Electronic energy + Delta-G solvation = -25788.236783 eV Core-core repulsion = 21461.816158 eV Total energy + Delta-G solvation = -4326.420625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.40308 -48.91784 -48.85618 -42.36494 -39.92190 -35.79230 -35.30819 -34.37105 -31.90704 -31.46784 -30.67222 -28.44485 -26.40653 -25.51978 -24.62681 -23.22419 -22.65495 -20.28233 -19.96221 -19.80223 -18.71042 -18.65345 -17.88879 -17.77447 -16.89557 -16.63593 -16.56877 -16.21506 -15.72957 -15.63764 -15.50701 -15.29361 -15.18030 -14.99253 -14.98151 -14.58266 -14.51637 -14.34162 -14.30956 -13.93388 -13.78695 -12.98964 -12.76205 -12.57271 -12.43812 -12.29563 -12.21509 -11.78269 -11.70849 -11.65531 -11.32839 -10.77319 -10.75740 -9.89987 -9.68748 -8.85615 -8.33603 -6.51357 -0.86656 -0.77333 0.19693 0.46582 0.56439 1.02435 1.40735 1.42888 1.45263 1.56393 2.10548 2.21591 2.35719 2.49101 2.82796 2.90535 3.00683 3.10253 3.31690 3.41750 3.70395 3.79105 4.08654 4.10202 4.30617 4.49429 4.60684 4.63766 4.88972 4.97295 5.01386 5.13136 5.31740 5.48593 5.51796 5.56780 5.60980 5.78458 5.99806 6.43923 6.57080 7.18037 8.77968 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.003467 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.060962 B = 8073.641849 C =10187.894585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.078 3.922 10 S -0.004 6.004 11 C 0.301 3.699 12 N -0.495 5.495 13 C 0.237 3.763 14 C -0.086 4.086 15 C -0.087 4.087 16 C -0.123 4.123 17 C -0.091 4.091 18 C -0.132 4.132 19 C -0.086 4.086 20 C -0.179 4.179 21 C 0.089 3.911 22 C 0.531 3.469 23 F -0.171 7.171 24 F -0.156 7.156 25 F -0.159 7.159 26 N -0.521 5.521 27 H 0.271 0.729 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -25.286 -0.024 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.588 4.588 8 H 0.091 0.909 9 C -0.070 4.070 10 S 0.235 5.765 11 C -0.073 4.073 12 N -0.212 5.212 13 C 0.088 3.912 14 C -0.087 4.087 15 C -0.106 4.106 16 C -0.141 4.141 17 C -0.109 4.109 18 C -0.149 4.149 19 C -0.105 4.105 20 C -0.205 4.205 21 C -0.061 4.061 22 C 0.475 3.525 23 F -0.153 7.153 24 F -0.138 7.138 25 F -0.140 7.140 26 N -0.239 5.239 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.138 0.862 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.215 -24.196 -0.026 24.226 hybrid contribution -2.076 0.825 -0.002 2.234 sum -0.861 -23.371 -0.028 23.387 Atomic orbital electron populations 1.70115 1.07903 1.28685 1.48900 1.25956 0.95826 1.03151 0.93416 0.85226 0.78544 0.77104 0.78867 1.19301 1.20226 1.18390 1.20986 0.93709 0.89667 1.54481 0.90925 1.20955 0.94545 0.91905 0.99638 1.85498 1.10070 0.93203 1.87740 1.25329 0.91029 0.96442 0.94518 1.68610 1.39568 0.97739 1.15263 1.20744 0.89112 0.93322 0.88068 1.18401 0.94783 0.87899 1.07593 1.21541 1.00428 0.91663 0.97016 1.21500 0.96229 0.96815 0.99534 1.21804 0.93544 1.00204 0.95397 1.21450 1.01660 0.91494 1.00325 1.21447 0.94138 0.98653 0.96307 1.22693 0.97940 0.97230 1.02676 1.21590 0.93781 0.91829 0.98881 1.17618 0.85544 0.74693 0.74640 1.93293 1.95502 1.30836 1.95628 1.93246 1.84707 1.80894 1.54921 1.93248 1.86241 1.88548 1.46010 1.68478 1.03195 1.36450 1.15793 0.91997 0.95843 0.95827 0.83188 0.82076 0.82495 0.83557 0.86181 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.17 13.29 21.45 0.28 -54.88 16 2 C 0.02 1.05 5.46 84.66 0.46 1.51 16 3 Si 0.98 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.55 -31.26 9.13 25.60 0.23 -31.03 16 8 H 0.07 3.96 7.71 -2.91 -0.02 3.94 16 9 C 0.08 4.30 4.56 71.24 0.32 4.62 16 10 S 0.00 -0.19 22.17 -56.49 -1.25 -1.44 16 11 C 0.30 12.72 7.85 180.45 1.42 14.13 16 12 N -0.49 -18.00 9.55 -185.50 -1.77 -19.77 16 13 C 0.24 6.87 6.76 42.01 0.28 7.16 16 14 C -0.09 -1.90 5.88 -20.05 -0.12 -2.01 16 15 C -0.09 -1.28 9.44 22.49 0.21 -1.07 16 16 C -0.12 -1.28 10.03 22.24 0.22 -1.06 16 17 C -0.09 -0.96 10.04 22.31 0.22 -0.74 16 18 C -0.13 -1.94 10.03 22.24 0.22 -1.72 16 19 C -0.09 -1.85 9.59 22.49 0.22 -1.64 16 20 C -0.18 -4.66 9.09 22.66 0.21 -4.46 16 21 C 0.09 3.04 6.28 42.51 0.27 3.30 16 22 C 0.53 16.49 3.34 71.24 0.24 16.73 16 23 F -0.17 -6.68 16.89 44.97 0.76 -5.92 16 24 F -0.16 -4.14 17.18 44.97 0.77 -3.37 16 25 F -0.16 -4.39 17.29 44.97 0.78 -3.62 16 26 N -0.52 -22.33 8.55 -184.72 -1.58 -23.91 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.02 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.02 1.40 8.11 -2.39 -0.02 1.38 16 30 H 0.15 1.45 6.27 -2.91 -0.02 1.43 16 31 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 33 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.12 2.97 7.58 -2.91 -0.02 2.95 16 35 H 0.20 3.18 6.32 -2.91 -0.02 3.16 16 Total: -1.00 -70.11 339.84 5.59 -64.52 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.16 Total: -0.82 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.41 Total: 3.75 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -3.07 Total: -98.57 kcal Atomic # 9 Polarization: -15.21 SS G_CDS: 2.31 Total: -12.90 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -1.25 Total: -1.44 kcal Total: -70.11 5.59 -64.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085565104.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.511 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds