Wall clock time and date at job start Tue Mar 31 2020 06:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46992 * 2 1 4 4 C 1.50705 * 109.46739 * 119.99674 * 2 1 3 5 5 H 1.07995 * 120.00023 * 119.99834 * 4 2 1 6 6 C 1.37885 * 119.99943 * 299.99916 * 4 2 1 7 7 N 1.31515 * 119.99688 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99883 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47381 * 90.00156 * 8 6 4 10 10 H 1.48496 * 109.46791 * 209.99835 * 8 6 4 11 11 H 1.48496 * 109.46924 * 329.99694 * 8 6 4 12 12 N 1.46497 * 109.47159 * 239.99264 * 2 1 3 13 13 C 1.46498 * 120.00512 * 300.00507 * 12 2 1 14 14 C 1.34779 * 119.99681 * 120.00447 * 12 2 1 15 15 O 1.21586 * 119.99976 * 359.97438 * 14 12 2 16 16 N 1.34773 * 119.99860 * 180.02562 * 14 12 2 17 17 C 1.39562 * 119.99715 * 174.10238 * 16 14 12 18 18 C 1.39571 * 120.82385 * 154.01100 * 17 16 14 19 19 C 1.37809 * 119.20252 * 179.97438 * 18 17 16 20 20 N 1.32049 * 120.90712 * 359.97438 * 19 18 17 21 21 C 1.32367 * 121.81609 * 0.02562 * 20 19 18 22 22 O 1.35682 * 119.64785 * 180.02562 * 21 20 19 23 23 C 1.35898 * 117.99826 * 4.95222 * 22 21 20 24 24 C 1.38748 * 120.05569 * 245.29406 * 23 22 21 25 25 C 1.38149 * 119.93771 * 179.72406 * 24 23 22 26 26 C 1.38265 * 120.05828 * 0.53257 * 25 24 23 27 27 C 1.38270 * 120.11495 * 359.77180 * 26 25 24 28 28 C 1.38141 * 120.05775 * 359.94660 * 27 26 25 29 29 C 1.38665 * 120.70261 * 359.72186 * 21 20 19 30 30 H 1.09005 * 109.47426 * 300.00732 * 1 2 3 31 31 H 1.09007 * 109.46824 * 60.00616 * 1 2 3 32 32 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99377 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47074 * 89.99762 * 13 12 2 35 35 H 1.08996 * 109.47346 * 210.00456 * 13 12 2 36 36 H 1.09004 * 109.46995 * 329.99752 * 13 12 2 37 37 H 0.96994 * 120.00087 * 354.10450 * 16 14 12 38 38 H 1.08004 * 120.40140 * 359.97438 * 18 17 16 39 39 H 1.08001 * 119.54298 * 180.02562 * 19 18 17 40 40 H 1.07992 * 120.02983 * 0.02562 * 24 23 22 41 41 H 1.07995 * 119.96643 * 180.28123 * 25 24 23 42 42 H 1.07999 * 119.94564 * 179.74396 * 26 25 24 43 43 H 1.07997 * 119.97623 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.03111 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.49164 * 180.28095 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4829 7 7 2.1378 -0.8589 3.5567 8 14 0.6246 1.2792 2.6540 9 1 -0.8029 0.8729 2.6997 10 1 0.9757 1.9953 3.9067 11 1 0.8470 2.1765 1.4919 12 7 2.0183 -0.6907 -1.1960 13 6 1.6644 -2.0933 -1.4279 14 6 2.7933 -0.0358 -2.0832 15 8 3.0866 1.1284 -1.8911 16 7 3.2421 -0.6711 -3.1838 17 6 3.9401 0.0377 -4.1627 18 6 4.8530 -0.6074 -4.9984 19 6 5.5236 0.1249 -5.9541 20 7 5.3123 1.4216 -6.0867 21 6 4.4555 2.0716 -5.3151 22 8 4.2723 3.4046 -5.4900 23 6 4.9088 4.0050 -6.5298 24 6 5.8909 4.9549 -6.2884 25 6 6.5404 5.5595 -7.3472 26 6 6.2048 5.2269 -8.6466 27 6 5.2220 4.2852 -8.8899 28 6 4.5736 3.6734 -7.8347 29 6 3.7387 1.4036 -4.3339 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.9031 -0.5276 4.4376 34 1 0.7375 -2.1445 -1.9992 35 1 2.4629 -2.5821 -1.9861 36 1 1.5294 -2.5969 -0.4706 37 1 3.0800 -1.6208 -3.2956 38 1 5.0319 -1.6677 -4.8974 39 1 6.2309 -0.3688 -6.6040 40 1 6.1507 5.2177 -5.2737 41 1 7.3080 6.2956 -7.1597 42 1 6.7108 5.7038 -9.4730 43 1 4.9614 4.0274 -9.9058 44 1 3.8057 2.9382 -8.0253 45 1 3.0371 1.9365 -3.7092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086297200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:12 Heat of formation + Delta-G solvation = 34.748597 kcal Electronic energy + Delta-G solvation = -28702.284173 eV Core-core repulsion = 24686.878641 eV Total energy + Delta-G solvation = -4015.405532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23022 -40.30162 -39.09084 -37.62220 -36.04150 -34.89117 -32.89009 -31.32081 -31.20306 -30.98567 -29.77742 -29.53523 -26.46270 -25.21559 -24.18337 -23.86796 -22.84115 -22.37835 -21.20782 -19.54711 -19.07329 -18.07357 -17.28860 -16.67875 -16.34832 -16.20815 -16.13215 -15.89818 -15.48949 -15.16388 -14.78775 -14.37389 -14.18880 -14.10548 -13.80290 -13.63465 -13.36556 -13.02849 -12.86825 -12.72360 -12.36810 -12.30051 -12.12915 -11.99790 -11.83173 -11.68251 -11.31983 -11.12247 -10.88741 -10.75999 -10.25813 -10.00955 -9.68143 -9.44334 -9.34819 -9.15368 -9.01516 -8.69272 -8.57116 -8.46097 -7.86786 -6.20703 -4.22209 0.92777 1.16943 1.21351 1.26376 2.67923 3.00551 3.19898 3.34398 3.36679 3.41882 3.71044 3.87307 4.17019 4.29525 4.30243 4.70596 4.71523 4.85017 4.91555 5.01915 5.11618 5.13677 5.17961 5.32449 5.36454 5.46389 5.65633 5.74426 5.77401 5.78430 6.03714 6.07846 6.15406 6.17861 6.18881 6.24158 6.25301 6.27462 6.39156 6.58730 6.72120 6.75145 6.80110 7.21365 7.35784 7.41885 7.53556 7.89362 8.18461 8.37787 8.77814 8.86594 9.39564 10.91761 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.002448 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.758260 B =11437.277858 C =12371.163845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.243 3.757 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.593 5.593 13 C 0.080 3.920 14 C 0.697 3.303 15 O -0.570 6.570 16 N -0.683 5.683 17 C 0.258 3.742 18 C -0.244 4.244 19 C 0.156 3.844 20 N -0.550 5.550 21 C 0.331 3.669 22 O -0.246 6.246 23 C 0.104 3.896 24 C -0.120 4.120 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.107 4.107 28 C -0.117 4.117 29 C -0.197 4.197 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.410 0.590 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 2.839 -24.200 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.141 3.859 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.327 5.327 13 C -0.064 4.064 14 C 0.399 3.601 15 O -0.446 6.446 16 N -0.331 5.331 17 C 0.151 3.849 18 C -0.268 4.268 19 C 0.000 4.000 20 N -0.274 5.274 21 C 0.155 3.845 22 O -0.152 6.152 23 C 0.062 3.938 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.135 4.135 29 C -0.221 4.221 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.248 0.752 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.109 4.283 -24.177 25.079 hybrid contribution -1.019 -0.485 0.872 1.426 sum 4.090 3.798 -23.305 23.964 Atomic orbital electron populations 1.22464 0.98858 1.01186 0.99402 1.19288 0.89921 0.95038 0.81605 0.91667 1.21133 1.32959 1.14419 0.88436 0.90292 1.24855 0.95631 0.96598 0.95579 1.69867 1.44966 1.40151 0.98020 0.86915 0.80370 0.83776 0.77657 1.20341 1.22068 1.18687 1.47240 1.50353 1.11862 1.23224 1.21660 0.98578 0.82777 1.03374 1.15946 0.79629 0.85072 0.79467 1.90894 1.61831 1.15350 1.76571 1.42911 1.57780 1.12841 1.19532 1.17424 0.89491 0.90790 0.87171 1.21670 1.01131 1.02203 1.01820 1.22069 0.95657 0.87703 0.94584 1.67323 1.19972 1.11325 1.28821 1.19559 0.90837 0.83202 0.90900 1.84629 1.65171 1.18358 1.47044 1.18599 0.94023 0.95126 0.86052 1.21126 0.94029 0.98276 1.00399 1.20988 0.99545 0.99822 0.92150 1.21172 0.98127 0.98188 0.96887 1.20977 0.96349 0.96601 0.98615 1.21283 1.00261 1.00212 0.91773 1.21139 1.05678 0.93811 1.01457 0.92974 0.94728 0.92517 0.92334 0.93342 0.93157 0.88872 0.75189 0.84323 0.82189 0.85194 0.85405 0.85822 0.85676 0.85883 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.67 37.16 0.32 -3.02 16 2 C 0.24 5.68 2.23 -69.08 -0.15 5.52 16 3 H 0.07 1.71 5.96 -51.93 -0.31 1.40 16 4 C -0.53 -14.23 8.57 -34.44 -0.30 -14.53 16 5 H 0.08 2.27 7.58 -52.49 -0.40 1.87 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 8 Si 0.88 21.46 24.37 -169.99 -4.14 17.32 16 9 H -0.28 -6.40 6.87 56.52 0.39 -6.02 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.30 6.53 56.52 0.37 -5.94 16 12 N -0.59 -11.57 2.75 -181.01 -0.50 -12.07 16 13 C 0.08 1.17 9.25 59.85 0.55 1.73 16 14 C 0.70 13.54 8.09 -86.92 -0.70 12.83 16 15 O -0.57 -13.22 12.99 5.29 0.07 -13.15 16 16 N -0.68 -9.96 5.24 -14.08 -0.07 -10.04 16 17 C 0.26 3.74 6.44 -83.51 -0.54 3.20 16 18 C -0.24 -2.74 10.04 -39.24 -0.39 -3.13 16 19 C 0.16 1.74 11.17 -17.61 -0.20 1.55 16 20 N -0.55 -7.66 8.82 -13.41 -0.12 -7.78 16 21 C 0.33 5.18 7.29 -17.16 -0.13 5.05 16 22 O -0.25 -3.88 9.98 -2.94 -0.03 -3.91 16 23 C 0.10 1.41 5.39 -39.20 -0.21 1.19 16 24 C -0.12 -1.41 9.99 -39.43 -0.39 -1.81 16 25 C -0.11 -1.00 10.04 -39.60 -0.40 -1.40 16 26 C -0.13 -1.08 10.04 -39.56 -0.40 -1.47 16 27 C -0.11 -1.00 10.04 -39.61 -0.40 -1.39 16 28 C -0.12 -1.35 9.10 -39.43 -0.36 -1.71 16 29 C -0.20 -3.26 8.70 -39.09 -0.34 -3.60 16 30 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.57 6.28 -51.93 -0.33 0.24 16 36 H 0.09 1.53 7.02 -51.93 -0.36 1.17 16 37 H 0.41 4.51 6.49 -40.82 -0.27 4.24 16 38 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.16 3.10 6.02 -52.49 -0.32 2.78 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -33.74 370.39 -8.10 -41.84 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.53 Total: 6.76 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -4.12 Total: 1.06 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.08 Total: -55.49 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.04 Total: -17.06 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.74 -8.10 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086297200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.587 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds