Wall clock time and date at job start Tue Mar 31 2020 05:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46992 * 2 1 4 4 C 1.46499 * 120.00030 * 269.99890 * 3 2 1 5 5 C 1.50704 * 109.47043 * 270.00225 * 4 3 2 6 6 H 1.07998 * 120.00295 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00222 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47076 * 90.00315 * 9 7 5 11 11 H 1.48499 * 109.47190 * 210.00102 * 9 7 5 12 12 H 1.48498 * 109.47260 * 330.00120 * 9 7 5 13 13 C 1.34779 * 119.99765 * 90.00461 * 3 2 1 14 14 O 1.21278 * 119.99592 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99839 * 359.97438 * 13 3 2 16 16 N 1.46511 * 109.46871 * 180.02562 * 15 13 3 17 17 C 1.39720 * 119.99742 * 180.02562 * 16 15 13 18 18 C 1.38895 * 120.07968 * 0.02562 * 17 16 15 19 19 C 1.38115 * 119.93110 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.09359 * 0.02562 * 19 18 17 21 21 C 1.38268 * 120.15321 * 0.02562 * 20 19 18 22 22 C 1.38196 * 120.06895 * 359.97438 * 21 20 19 23 23 Br 1.89091 * 120.04724 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47282 * 299.99914 * 1 2 3 25 25 H 1.09004 * 109.46876 * 59.99771 * 1 2 3 26 26 H 1.08996 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47282 * 240.00086 * 2 1 3 28 28 H 1.08995 * 109.47282 * 119.99810 * 2 1 3 29 29 H 1.09001 * 109.46980 * 30.00176 * 4 3 2 30 30 H 1.08995 * 109.47317 * 150.00283 * 4 3 2 31 31 H 0.97004 * 120.00280 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47153 * 60.00803 * 15 13 3 33 33 H 1.08998 * 109.47717 * 300.00021 * 15 13 3 34 34 H 0.96992 * 119.99735 * 0.02562 * 16 15 13 35 35 H 1.07994 * 120.03520 * 0.25669 * 18 17 16 36 36 H 1.07999 * 119.94973 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.92358 * 179.97438 * 20 19 18 38 38 H 1.08007 * 119.96660 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 5.3913 2.1835 -3.2574 9 14 3.0130 3.4361 -3.9286 10 1 3.1157 4.8562 -3.5068 11 1 3.4066 3.3138 -5.3553 12 1 1.6135 2.9694 -3.7595 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3063 2.4722 16 7 2.3083 2.2040 3.5859 17 6 2.1531 1.7648 4.9031 18 6 1.6990 0.4773 5.1587 19 6 1.5472 0.0461 6.4621 20 6 1.8462 0.8946 7.5124 21 6 2.2975 2.1774 7.2622 22 6 2.4518 2.6156 5.9606 23 35 3.0697 4.3697 5.6191 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6878 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 5.7174 2.5740 -4.0833 32 1 2.6214 0.4186 2.5301 33 1 0.9433 1.0124 2.5299 34 1 2.6259 3.1032 3.4086 35 1 1.4692 -0.1875 4.3393 36 1 1.1945 -0.9550 6.6611 37 1 1.7261 0.5548 8.5304 38 1 2.5305 2.8374 8.0848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088522977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:11 Heat of formation + Delta-G solvation = -1.627422 kcal Electronic energy + Delta-G solvation = -21142.810072 eV Core-core repulsion = 17838.559439 eV Total energy + Delta-G solvation = -3304.250634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91417 -39.07253 -35.84121 -35.16699 -32.80029 -32.35526 -30.55494 -30.11020 -29.33993 -28.05868 -26.19967 -23.12283 -22.90478 -22.16958 -21.43172 -18.73513 -17.79332 -17.00454 -16.63785 -16.17056 -15.69906 -15.38896 -15.10723 -14.26135 -14.15996 -13.96443 -13.62986 -13.57487 -13.51206 -13.05866 -12.73894 -12.45194 -12.23798 -11.89256 -11.80792 -11.52046 -11.18578 -11.05894 -10.89571 -10.86094 -10.56560 -10.27603 -10.22377 -10.20650 -9.61796 -9.26392 -8.89034 -8.64050 -7.89080 -7.55036 -6.13729 -4.13332 1.07689 1.41558 1.69592 3.08415 3.13833 3.25609 3.31325 3.33567 3.61490 3.78632 4.34761 4.65627 4.72588 4.83908 5.06802 5.15779 5.19501 5.22442 5.23692 5.33931 5.43756 5.45378 5.61235 5.68376 5.87014 5.95458 6.05133 6.13573 6.29951 6.37814 6.55010 6.63678 6.84336 7.07818 7.20011 7.53992 7.65630 8.07169 8.39107 8.72480 8.89378 9.45742 10.99508 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003356 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.306276 B = 8341.945340 C = 9581.424299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.217 3.783 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.502 3.498 14 O -0.534 6.534 15 C 0.101 3.899 16 N -0.724 5.724 17 C 0.253 3.747 18 C -0.199 4.199 19 C -0.054 4.054 20 C -0.184 4.184 21 C -0.041 4.041 22 C -0.174 4.174 23 Br -0.052 7.052 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 -4.543 20.387 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.096 3.904 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.288 3.712 14 O -0.411 6.411 15 C -0.027 4.027 16 N -0.356 5.356 17 C 0.144 3.856 18 C -0.222 4.222 19 C -0.073 4.073 20 C -0.205 4.205 21 C -0.061 4.061 22 C -0.258 4.258 23 Br 0.032 6.968 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.258 0.742 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.050 -3.341 19.862 22.509 hybrid contribution -0.406 0.371 -0.735 0.918 sum -10.456 -2.970 19.127 22.000 Atomic orbital electron populations 1.22244 0.96487 1.01834 1.02363 1.21523 0.93591 0.83562 1.03461 1.47893 1.63578 1.13492 1.06791 1.19694 0.97509 0.93402 0.79754 1.21301 0.95246 1.33163 1.07298 0.90723 1.24854 0.95002 0.95749 0.97332 1.69893 1.15119 1.44801 1.23549 0.86853 0.81400 0.81622 0.79822 1.19885 1.21001 1.19072 1.20132 0.78822 0.87099 0.85158 1.90683 1.45685 1.18014 1.86684 1.21250 1.01818 0.93771 0.85851 1.44878 1.71732 1.17932 1.01017 1.17518 0.91829 0.92331 0.83967 1.20666 1.09094 0.94582 0.97890 1.21003 0.95338 0.99097 0.91911 1.20853 1.06351 0.94117 0.99200 1.20846 0.95291 0.96024 0.93985 1.21236 1.16394 0.93043 0.95161 1.96692 1.87957 1.16208 1.95901 0.92946 0.92069 0.91707 0.89302 0.91284 0.94997 0.94509 0.92485 0.89226 0.89393 0.74174 0.85270 0.85638 0.85767 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.10 1.45 5.93 -4.04 -0.02 1.42 16 3 N -0.59 -11.33 2.46 -175.06 -0.43 -11.76 16 4 C 0.22 5.12 4.23 -5.19 -0.02 5.10 16 5 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 9 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 13 C 0.50 9.74 7.74 -10.99 -0.09 9.65 16 14 O -0.53 -12.66 15.25 5.56 0.08 -12.58 16 15 C 0.10 1.43 3.95 -5.19 -0.02 1.41 16 16 N -0.72 -10.92 5.65 -59.78 -0.34 -11.25 16 17 C 0.25 3.35 6.65 -83.75 -0.56 2.79 16 18 C -0.20 -2.15 9.31 -39.38 -0.37 -2.52 16 19 C -0.05 -0.49 10.04 -39.61 -0.40 -0.89 16 20 C -0.18 -1.68 10.04 -39.55 -0.40 -2.08 16 21 C -0.04 -0.43 9.78 -39.59 -0.39 -0.82 16 22 C -0.17 -2.24 6.24 -39.33 -0.25 -2.48 16 23 Br -0.05 -0.70 32.12 -68.01 -2.18 -2.88 16 24 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.09 1.12 7.20 -51.93 -0.37 0.75 16 33 H 0.09 1.01 7.00 -51.93 -0.36 0.64 16 34 H 0.42 7.13 5.84 -40.82 -0.24 6.89 16 35 H 0.13 1.18 6.74 -52.49 -0.35 0.83 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -33.19 336.52 -9.14 -42.33 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.89 Total: 4.30 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.56 Total: -3.27 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.01 Total: -49.60 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.18 Total: -2.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.19 -9.14 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088522977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.703 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds