Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34163 * 125.15871 * 2 1 4 4 C 1.37966 * 107.88604 * 179.71895 * 3 2 1 5 5 C 1.47282 * 126.81152 * 180.27808 * 4 3 2 6 6 O 1.21617 * 120.00145 * 125.70195 * 5 4 3 7 7 N 1.34783 * 119.99846 * 305.70596 * 5 4 3 8 8 C 1.46970 * 120.59182 * 3.27388 * 7 5 4 9 9 C 1.53817 * 108.39619 * 124.76200 * 8 7 5 10 10 N 1.46960 * 108.58129 * 49.63362 * 9 8 7 11 11 C 1.36938 * 120.59459 * 124.62598 * 10 9 8 12 12 H 1.07997 * 120.00057 * 203.11348 * 11 10 9 13 13 C 1.38808 * 119.99883 * 23.11101 * 11 10 9 14 14 N 1.31624 * 120.00209 * 217.78945 * 13 11 10 15 15 Si 1.86807 * 120.00113 * 37.78528 * 13 11 10 16 16 H 1.48500 * 109.47054 * 95.41145 * 15 13 11 17 17 H 1.48500 * 109.47002 * 215.41247 * 15 13 11 18 18 H 1.48505 * 109.46797 * 335.40983 * 15 13 11 19 19 C 1.46973 * 118.81302 * 304.64822 * 10 9 8 20 20 C 1.46960 * 120.59298 * 183.55416 * 7 5 4 21 21 C 1.46596 * 106.37886 * 0.39794 * 4 3 2 22 22 C 1.48292 * 126.51097 * 179.86458 * 21 4 3 23 23 C 1.39380 * 120.12653 * 144.71015 * 22 21 4 24 24 C 1.38007 * 119.87172 * 179.97438 * 23 22 21 25 25 C 1.38326 * 120.13063 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.25006 * 359.97438 * 25 24 23 27 27 C 1.38014 * 120.12335 * 0.02562 * 26 25 24 28 28 N 1.31365 * 106.97904 * 359.60300 * 21 4 3 29 29 H 1.09001 * 109.47065 * 269.99239 * 1 2 3 30 30 H 1.09002 * 109.46961 * 29.99580 * 1 2 3 31 31 H 1.09005 * 109.46648 * 149.99596 * 1 2 3 32 32 H 1.07999 * 126.05887 * 0.02765 * 3 2 1 33 33 H 1.09007 * 109.60499 * 244.53863 * 8 7 5 34 34 H 1.08994 * 109.61008 * 5.05173 * 8 7 5 35 35 H 1.08996 * 109.73413 * 289.84402 * 9 8 7 36 36 H 1.08994 * 109.53039 * 169.30127 * 9 8 7 37 37 H 0.97000 * 120.00209 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.60534 * 295.48219 * 19 10 9 39 39 H 1.08999 * 109.74741 * 175.05329 * 19 10 9 40 40 H 1.09003 * 109.61146 * 354.94718 * 20 7 5 41 41 H 1.09002 * 109.61055 * 115.45653 * 20 7 5 42 42 H 1.07995 * 120.06567 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.93415 * 179.72550 * 24 23 22 44 44 H 1.07998 * 119.87451 * 179.97438 * 25 24 23 45 45 H 1.07990 * 119.93728 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.05830 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.0969 0.0000 4 6 3.5550 0.6872 0.0064 5 6 4.7478 1.5512 0.0145 6 8 5.5962 1.4086 0.8742 7 7 4.8991 2.4999 -0.9308 8 6 3.8491 2.7316 -1.9328 9 6 3.4479 4.2156 -1.8812 10 7 4.6684 5.0327 -1.9322 11 6 4.8225 5.9960 -2.8932 12 1 5.8119 6.3268 -3.1724 13 6 3.7070 6.5473 -3.5085 14 7 3.7399 6.8387 -4.7917 15 14 2.1591 6.8754 -2.5156 16 1 2.1547 8.2882 -2.0581 17 1 0.9654 6.6256 -3.3628 18 1 2.1269 5.9731 -1.3365 19 6 5.7207 4.7972 -0.9336 20 6 6.1196 3.3170 -0.9818 21 6 3.5322 -0.7785 0.0007 22 6 4.7102 -1.6793 0.0016 23 6 4.6656 -2.8886 0.6933 24 6 5.7648 -3.7231 0.6902 25 6 6.9094 -3.3613 0.0029 26 6 6.9593 -2.1623 -0.6853 27 6 5.8662 -1.3198 -0.6892 28 7 2.2700 -1.1425 0.0004 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.8899 2.1193 0.0004 33 1 4.2296 2.4870 -2.9246 34 1 2.9837 2.1089 -1.7064 35 1 2.9096 4.4194 -0.9556 36 1 2.8138 4.4515 -2.7357 37 1 2.9605 7.2243 -5.2216 38 1 5.3442 5.0425 0.0594 39 1 6.5882 5.4174 -1.1595 40 1 6.7538 3.0811 -0.1273 41 1 6.6579 3.1131 -1.9074 42 1 3.7725 -3.1723 1.2299 43 1 5.7329 -4.6583 1.2294 44 1 7.7673 -4.0173 0.0035 45 1 7.8554 -1.8851 -1.2206 46 1 5.9062 -0.3842 -1.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089246948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = 117.569936 kcal Electronic energy + Delta-G solvation = -29813.091351 eV Core-core repulsion = 25898.995884 eV Total energy + Delta-G solvation = -3914.095467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.34079 -39.26915 -38.94741 -36.91455 -33.93523 -33.84747 -31.90782 -31.17036 -30.98804 -30.75094 -29.93006 -27.45783 -26.57709 -24.09399 -23.24818 -23.08204 -22.75093 -21.83712 -20.69307 -19.96457 -18.90515 -17.52473 -16.99254 -16.48020 -16.20019 -15.72124 -15.57873 -15.18647 -15.04736 -14.81493 -14.50378 -14.25931 -14.00003 -13.73283 -13.47038 -13.43762 -13.34953 -12.99121 -12.87531 -12.84864 -12.56513 -12.32885 -12.17820 -11.92171 -11.40233 -11.27710 -11.06438 -10.95010 -10.82883 -10.47752 -10.38577 -10.23127 -9.92128 -9.61124 -9.50086 -8.98490 -8.86002 -8.73542 -8.35546 -8.19325 -7.10250 -6.13436 -3.29658 0.92835 1.36936 1.59491 2.18536 2.33418 3.09303 3.28524 3.41690 3.43642 3.47954 3.81198 4.13757 4.43978 4.46754 4.67952 4.80302 4.84879 4.87165 4.90408 4.97332 5.05871 5.13245 5.21912 5.25997 5.37230 5.42658 5.55461 5.58068 5.61717 5.79683 5.83168 5.89283 5.97157 6.06544 6.07079 6.16401 6.25752 6.41890 6.43276 6.46163 6.50524 6.52993 6.67245 6.71715 6.88401 6.95760 7.42998 7.78945 7.81881 8.18946 8.52280 8.83102 9.62554 10.01268 11.00568 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.003567 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.602033 B = 7847.352850 C = 9177.284596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.096 3.904 4 C -0.264 4.264 5 C 0.590 3.410 6 O -0.543 6.543 7 N -0.594 5.594 8 C 0.082 3.918 9 C 0.134 3.866 10 N -0.599 5.599 11 C -0.273 4.273 12 H 0.085 0.915 13 C 0.037 3.963 14 N -0.877 5.877 15 Si 0.831 3.169 16 H -0.293 1.293 17 H -0.294 1.294 18 H -0.257 1.257 19 C 0.134 3.866 20 C 0.097 3.903 21 C 0.156 3.844 22 C -0.012 4.012 23 C -0.090 4.090 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.119 4.119 27 C -0.076 4.076 28 N -0.283 5.283 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.187 0.813 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -18.349 8.960 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 C -0.052 4.052 4 C -0.279 4.279 5 C 0.377 3.623 6 O -0.422 6.422 7 N -0.327 5.327 8 C -0.042 4.042 9 C 0.007 3.993 10 N -0.322 5.322 11 C -0.400 4.400 12 H 0.103 0.897 13 C -0.164 4.164 14 N -0.517 5.517 15 Si 0.657 3.343 16 H -0.221 1.221 17 H -0.221 1.221 18 H -0.182 1.182 19 C 0.007 3.993 20 C -0.027 4.027 21 C -0.011 4.011 22 C -0.014 4.014 23 C -0.109 4.109 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.096 4.096 28 N -0.103 5.103 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.204 0.796 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.370 -19.265 9.228 21.626 hybrid contribution -0.776 1.338 0.384 1.593 sum -4.146 -17.928 9.612 20.760 Atomic orbital electron populations 1.21995 0.73552 1.05068 1.03761 1.48074 1.07043 1.03158 1.56314 1.22942 0.90186 0.93524 0.98502 1.21228 0.93097 0.92726 1.20825 1.17213 0.84753 0.79221 0.81111 1.90754 1.43995 1.70440 1.36964 1.47940 1.19870 1.34998 1.29847 1.22715 0.90370 0.99343 0.91820 1.21780 0.89827 0.87961 0.99775 1.44292 1.16416 1.38499 1.33023 1.18803 0.94092 1.15782 1.11321 0.89746 1.25126 0.96992 0.99009 0.95286 1.70139 1.30616 1.42925 1.08058 0.87713 0.84487 0.79525 0.82528 1.22089 1.22076 1.18214 1.21331 0.93078 0.92788 0.92106 1.22223 0.85963 0.92259 1.02224 1.21694 0.91120 0.90469 0.97833 1.17667 0.90765 0.93198 0.99776 1.21147 0.98700 0.92840 0.98229 1.21033 0.93347 0.99777 1.00238 1.21230 0.97986 0.96703 0.97094 1.21061 0.98282 0.94437 0.99903 1.21130 0.91911 0.99067 0.97460 1.77270 1.01131 1.06915 1.24991 0.90409 0.88869 0.88909 0.79636 0.91000 0.90695 0.95151 0.90577 0.92740 0.95528 0.90678 0.89511 0.91391 0.85753 0.85806 0.85936 0.85581 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.40 59.85 0.68 1.34 16 2 N -0.37 -4.31 3.95 -67.64 -0.27 -4.58 16 3 C 0.10 1.22 9.17 -16.63 -0.15 1.07 16 4 C -0.26 -4.11 5.23 -102.95 -0.54 -4.65 16 5 C 0.59 10.32 5.85 -12.58 -0.07 10.25 16 6 O -0.54 -10.92 16.30 5.26 0.09 -10.84 16 7 N -0.59 -10.23 2.94 -173.53 -0.51 -10.74 16 8 C 0.08 1.38 6.42 -3.36 -0.02 1.36 16 9 C 0.13 2.66 4.53 -3.37 -0.02 2.64 16 10 N -0.60 -13.42 2.76 -171.76 -0.47 -13.89 16 11 C -0.27 -7.19 9.88 -15.06 -0.15 -7.34 16 12 H 0.08 2.37 8.03 -52.49 -0.42 1.95 16 13 C 0.04 1.01 4.83 -17.43 -0.08 0.92 16 14 N -0.88 -25.41 13.97 55.49 0.78 -24.64 16 15 Si 0.83 19.90 26.33 -169.99 -4.48 15.42 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.26 -5.74 4.88 56.52 0.28 -5.46 16 19 C 0.13 2.55 6.67 -3.59 -0.02 2.53 16 20 C 0.10 1.67 6.60 -3.60 -0.02 1.65 16 21 C 0.16 2.40 6.94 -80.56 -0.56 1.84 16 22 C -0.01 -0.17 5.84 -104.91 -0.61 -0.79 16 23 C -0.09 -1.12 9.76 -39.24 -0.38 -1.50 16 24 C -0.13 -1.31 10.03 -39.63 -0.40 -1.71 16 25 C -0.11 -1.14 10.04 -39.51 -0.40 -1.54 16 26 C -0.12 -1.39 10.03 -39.63 -0.40 -1.79 16 27 C -0.08 -1.07 8.98 -39.24 -0.35 -1.43 16 28 N -0.28 -4.03 12.47 34.57 0.43 -3.60 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.45 8.13 -51.93 -0.42 0.02 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.19 1.96 7.79 -52.49 -0.41 1.55 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.08 4.42 -51.93 -0.23 0.85 16 35 H 0.03 0.60 6.80 -51.93 -0.35 0.25 16 36 H 0.08 1.63 5.28 -51.93 -0.27 1.35 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 1.38 7.92 -51.93 -0.41 0.97 16 40 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.83 6.88 -52.49 -0.36 1.47 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.79 373.50 -8.62 -42.40 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.31 Total: 1.97 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -3.50 Total: 2.85 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.05 Total: -57.44 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.48 Total: 15.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.79 -8.62 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089246948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.973 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds