Wall clock time and date at job start Tue Mar 31 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34163 * 125.15871 * 2 1 4 4 C 1.37966 * 107.88604 * 179.71895 * 3 2 1 5 5 C 1.47282 * 126.81152 * 180.27808 * 4 3 2 6 6 O 1.21617 * 120.00145 * 125.70195 * 5 4 3 7 7 N 1.34783 * 119.99846 * 305.70596 * 5 4 3 8 8 C 1.46970 * 120.59182 * 3.27388 * 7 5 4 9 9 C 1.53817 * 108.39619 * 124.76200 * 8 7 5 10 10 N 1.46960 * 108.58129 * 49.63362 * 9 8 7 11 11 C 1.36938 * 120.59459 * 124.62598 * 10 9 8 12 12 H 1.07997 * 120.00057 * 203.11348 * 11 10 9 13 13 C 1.38808 * 119.99883 * 23.11101 * 11 10 9 14 14 N 1.31624 * 120.00209 * 217.78945 * 13 11 10 15 15 Si 1.86807 * 120.00113 * 37.78528 * 13 11 10 16 16 H 1.48500 * 109.47054 * 95.41145 * 15 13 11 17 17 H 1.48500 * 109.47002 * 215.41247 * 15 13 11 18 18 H 1.48505 * 109.46797 * 335.40983 * 15 13 11 19 19 C 1.46973 * 118.81302 * 304.64822 * 10 9 8 20 20 C 1.46960 * 120.59298 * 183.55416 * 7 5 4 21 21 C 1.46596 * 106.37886 * 0.39794 * 4 3 2 22 22 C 1.48292 * 126.51097 * 179.86458 * 21 4 3 23 23 C 1.39380 * 120.12653 * 144.71015 * 22 21 4 24 24 C 1.38007 * 119.87172 * 179.97438 * 23 22 21 25 25 C 1.38326 * 120.13063 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.25006 * 359.97438 * 25 24 23 27 27 C 1.38014 * 120.12335 * 0.02562 * 26 25 24 28 28 N 1.31365 * 106.97904 * 359.60300 * 21 4 3 29 29 H 1.09001 * 109.47065 * 269.99239 * 1 2 3 30 30 H 1.09002 * 109.46961 * 29.99580 * 1 2 3 31 31 H 1.09005 * 109.46648 * 149.99596 * 1 2 3 32 32 H 1.07999 * 126.05887 * 0.02765 * 3 2 1 33 33 H 1.09007 * 109.60499 * 244.53863 * 8 7 5 34 34 H 1.08994 * 109.61008 * 5.05173 * 8 7 5 35 35 H 1.08996 * 109.73413 * 289.84402 * 9 8 7 36 36 H 1.08994 * 109.53039 * 169.30127 * 9 8 7 37 37 H 0.97000 * 120.00209 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.60534 * 295.48219 * 19 10 9 39 39 H 1.08999 * 109.74741 * 175.05329 * 19 10 9 40 40 H 1.09003 * 109.61146 * 354.94718 * 20 7 5 41 41 H 1.09002 * 109.61055 * 115.45653 * 20 7 5 42 42 H 1.07995 * 120.06567 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.93415 * 179.72550 * 24 23 22 44 44 H 1.07998 * 119.87451 * 179.97438 * 25 24 23 45 45 H 1.07990 * 119.93728 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.05830 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.0969 0.0000 4 6 3.5550 0.6872 0.0064 5 6 4.7478 1.5512 0.0145 6 8 5.5962 1.4086 0.8742 7 7 4.8991 2.4999 -0.9308 8 6 3.8491 2.7316 -1.9328 9 6 3.4479 4.2156 -1.8812 10 7 4.6684 5.0327 -1.9322 11 6 4.8225 5.9960 -2.8932 12 1 5.8119 6.3268 -3.1724 13 6 3.7070 6.5473 -3.5085 14 7 3.7399 6.8387 -4.7917 15 14 2.1591 6.8754 -2.5156 16 1 2.1547 8.2882 -2.0581 17 1 0.9654 6.6256 -3.3628 18 1 2.1269 5.9731 -1.3365 19 6 5.7207 4.7972 -0.9336 20 6 6.1196 3.3170 -0.9818 21 6 3.5322 -0.7785 0.0007 22 6 4.7102 -1.6793 0.0016 23 6 4.6656 -2.8886 0.6933 24 6 5.7648 -3.7231 0.6902 25 6 6.9094 -3.3613 0.0029 26 6 6.9593 -2.1623 -0.6853 27 6 5.8662 -1.3198 -0.6892 28 7 2.2700 -1.1425 0.0004 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.8899 2.1193 0.0004 33 1 4.2296 2.4870 -2.9246 34 1 2.9837 2.1089 -1.7064 35 1 2.9096 4.4194 -0.9556 36 1 2.8138 4.4515 -2.7357 37 1 2.9605 7.2243 -5.2216 38 1 5.3442 5.0425 0.0594 39 1 6.5882 5.4174 -1.1595 40 1 6.7538 3.0811 -0.1273 41 1 6.6579 3.1131 -1.9074 42 1 3.7725 -3.1723 1.2299 43 1 5.7329 -4.6583 1.2294 44 1 7.7673 -4.0173 0.0035 45 1 7.8554 -1.8851 -1.2206 46 1 5.9062 -0.3842 -1.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089246948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:24 Heat of formation + Delta-G solvation = 96.666888 kcal Electronic energy + Delta-G solvation = -29813.997775 eV Core-core repulsion = 25898.995884 eV Total energy + Delta-G solvation = -3915.001892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.37256 -40.63418 -39.83234 -38.47901 -35.60509 -34.72402 -33.63457 -32.61164 -31.91378 -31.73529 -31.09328 -28.96149 -27.55539 -25.60217 -24.78834 -24.27667 -23.66255 -23.01189 -21.95667 -21.04072 -20.27755 -18.95202 -18.14701 -17.84633 -17.43935 -16.92222 -16.67011 -16.50705 -16.16259 -16.04641 -15.91151 -15.70873 -15.35095 -14.92432 -14.69659 -14.66337 -14.37335 -14.25945 -14.15464 -13.97981 -13.66490 -13.51096 -13.50139 -13.23944 -12.76544 -12.53775 -12.32921 -12.22414 -12.12540 -12.09619 -11.89724 -11.87174 -11.35133 -10.98261 -10.84803 -10.66610 -9.95500 -9.88755 -9.76670 -9.29907 -8.91294 -8.20281 -5.34184 -0.00980 0.46699 0.57635 1.24029 1.36622 1.37440 1.50791 1.55396 1.82682 2.12655 2.46883 2.89045 2.93874 3.17398 3.39208 3.52763 3.78684 3.92591 4.02017 4.07004 4.10864 4.16685 4.24429 4.34718 4.37439 4.43266 4.43763 4.44421 4.52825 4.58771 4.68092 4.69202 4.71023 4.77438 4.85999 4.90916 4.99723 5.09145 5.16745 5.18487 5.51668 5.51979 5.56178 5.57986 5.82901 5.85056 6.02891 6.11180 6.39977 6.47039 6.89845 7.17275 7.63987 8.05076 8.97125 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.003567 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.602033 B = 7847.352850 C = 9177.284596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.357 5.357 3 C 0.109 3.891 4 C -0.301 4.301 5 C 0.598 3.402 6 O -0.575 6.575 7 N -0.596 5.596 8 C 0.096 3.904 9 C 0.130 3.870 10 N -0.612 5.612 11 C -0.265 4.265 12 H 0.052 0.948 13 C -0.015 4.015 14 N -0.928 5.928 15 Si 0.897 3.103 16 H -0.308 1.308 17 H -0.292 1.292 18 H -0.227 1.227 19 C 0.135 3.865 20 C 0.105 3.895 21 C 0.144 3.856 22 C -0.038 4.038 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.107 4.107 26 C -0.127 4.127 27 C -0.099 4.099 28 N -0.298 5.298 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.214 0.786 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.141 0.859 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -20.400 10.745 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.136 5.136 3 C -0.040 4.040 4 C -0.316 4.316 5 C 0.387 3.613 6 O -0.455 6.455 7 N -0.328 5.328 8 C -0.028 4.028 9 C 0.004 3.996 10 N -0.336 5.336 11 C -0.394 4.394 12 H 0.070 0.930 13 C -0.213 4.213 14 N -0.571 5.571 15 Si 0.724 3.276 16 H -0.237 1.237 17 H -0.219 1.219 18 H -0.151 1.151 19 C 0.009 3.991 20 C -0.018 4.018 21 C -0.023 4.023 22 C -0.040 4.040 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.145 4.145 27 C -0.119 4.119 28 N -0.119 5.119 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.230 0.770 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.174 0.826 44 H 0.174 0.826 45 H 0.159 0.841 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.025 -21.365 11.048 24.572 hybrid contribution -0.220 1.897 -0.160 1.916 sum -5.245 -19.468 10.888 22.914 Atomic orbital electron populations 1.22464 0.70578 1.06865 1.05508 1.48504 1.08571 1.02249 1.54235 1.23263 0.89289 0.94757 0.96704 1.21161 0.93469 0.92825 1.24129 1.17423 0.84940 0.78787 0.80173 1.90722 1.45408 1.71199 1.38174 1.47957 1.19765 1.35140 1.29922 1.22526 0.91240 0.97670 0.91358 1.21863 0.88808 0.89244 0.99699 1.44387 1.17930 1.38098 1.33158 1.18720 0.92827 1.16290 1.11559 0.93047 1.25649 1.00318 0.99583 0.95735 1.70226 1.31875 1.45314 1.09682 0.86657 0.80485 0.78679 0.81775 1.23703 1.21880 1.15069 1.21401 0.92329 0.93952 0.91419 1.22057 0.86300 0.91074 1.02404 1.21900 0.91729 0.90594 0.98043 1.17903 0.90905 0.94255 1.00975 1.21332 0.99792 0.92603 0.98268 1.21442 0.92489 1.00401 0.99551 1.21632 0.98996 0.96255 0.95663 1.21342 0.98103 0.94835 1.00187 1.21108 0.93118 0.99097 0.98575 1.77223 1.01005 1.08159 1.25469 0.88638 0.86168 0.88119 0.77002 0.92024 0.87815 0.93662 0.91884 0.92862 0.94891 0.90684 0.88955 0.91559 0.85263 0.82595 0.82601 0.84080 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 11.40 127.77 1.46 2.30 16 2 N -0.36 -7.45 3.95 -367.91 -1.45 -8.90 16 3 C 0.11 2.50 9.17 84.27 0.77 3.27 16 4 C -0.30 -9.07 5.23 -18.78 -0.10 -9.17 16 5 C 0.60 20.64 5.85 86.62 0.51 21.15 16 6 O -0.57 -23.21 16.30 -4.08 -0.07 -23.28 16 7 N -0.60 -20.06 2.94 -821.16 -2.42 -22.47 16 8 C 0.10 3.10 6.42 86.57 0.56 3.66 16 9 C 0.13 4.92 4.53 86.57 0.39 5.31 16 10 N -0.61 -27.05 2.76 -697.34 -1.93 -28.98 16 11 C -0.27 -14.20 9.88 84.03 0.83 -13.37 16 12 H 0.05 3.02 8.03 -2.91 -0.02 3.00 16 13 C -0.02 -0.83 4.83 84.86 0.41 -0.42 16 14 N -0.93 -55.08 13.97 21.65 0.30 -54.78 16 15 Si 0.90 41.04 26.33 68.60 1.81 42.84 16 16 H -0.31 -14.81 7.11 99.48 0.71 -14.11 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.23 -9.17 4.88 99.48 0.49 -8.68 16 19 C 0.13 5.09 6.67 86.41 0.58 5.66 16 20 C 0.11 3.61 6.60 86.42 0.57 4.18 16 21 C 0.14 4.36 6.94 44.07 0.31 4.67 16 22 C -0.04 -1.12 5.84 -20.05 -0.12 -1.23 16 23 C -0.10 -2.41 9.76 22.49 0.22 -2.19 16 24 C -0.12 -2.25 10.03 22.24 0.22 -2.02 16 25 C -0.11 -1.95 10.04 22.31 0.22 -1.72 16 26 C -0.13 -2.88 10.03 22.24 0.22 -2.66 16 27 C -0.10 -2.86 8.98 22.49 0.20 -2.65 16 28 N -0.30 -8.09 12.47 -44.53 -0.56 -8.65 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.12 0.60 8.13 -2.39 -0.02 0.58 16 31 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.21 3.57 7.79 -2.91 -0.02 3.55 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.10 2.74 4.42 -2.39 -0.01 2.73 16 35 H 0.05 1.61 6.80 -2.39 -0.02 1.59 16 36 H 0.06 2.58 5.28 -2.39 -0.01 2.56 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 2.79 7.92 -2.39 -0.02 2.77 16 40 H 0.09 3.09 6.99 -2.39 -0.02 3.07 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.14 2.62 8.06 -2.92 -0.02 2.60 16 46 H 0.10 3.22 6.88 -2.91 -0.02 3.20 16 Total: -1.00 -75.37 373.50 3.72 -71.64 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.78 Total: 17.82 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 7.25 Total: 14.75 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.05 Total: -123.78 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.81 Total: 42.84 kcal Total: -75.37 3.72 -71.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089246948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.312 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds