Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35814 * 117.00074 * 2 1 4 4 C 1.38896 * 119.89408 * 359.97180 * 3 2 1 5 5 C 1.37721 * 120.17351 * 179.69727 * 4 3 2 6 6 C 1.40024 * 119.97322 * 0.60578 * 5 4 3 7 7 C 1.46888 * 120.10295 * 179.69185 * 6 5 4 8 8 C 1.35234 * 120.00045 * 359.73071 * 7 6 5 9 9 C 1.41811 * 119.99961 * 179.97438 * 8 7 6 10 10 O 1.21798 * 120.00281 * 359.72028 * 9 8 7 11 11 C 1.47685 * 119.99562 * 179.97438 * 9 8 7 12 12 C 1.39798 * 120.07533 * 359.45029 * 11 9 8 13 13 C 1.37643 * 119.91724 * 179.76259 * 12 11 9 14 14 C 1.39158 * 120.08076 * 0.48995 * 13 12 11 15 15 O 1.35564 * 119.93032 * 179.74472 * 14 13 12 16 16 C 1.34771 * 117.00094 * 174.46760 * 15 14 13 17 17 H 1.07993 * 120.00200 * 5.05693 * 16 15 14 18 18 C 1.38747 * 119.99544 * 185.05305 * 16 15 14 19 19 N 1.31494 * 119.99874 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00236 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47194 * 89.99717 * 20 18 16 22 22 H 1.48501 * 109.47217 * 209.99612 * 20 18 16 23 23 H 1.48504 * 109.46813 * 329.99766 * 20 18 16 24 24 C 1.39161 * 120.14967 * 359.76173 * 14 13 12 25 25 C 1.37640 * 120.08172 * 0.02562 * 24 14 13 26 26 C 1.40028 * 119.79603 * 359.42281 * 6 5 4 27 27 C 1.38062 * 119.82431 * 0.27371 * 26 6 5 28 28 O 1.35994 * 119.98529 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.47156 * 299.99918 * 1 2 3 30 30 H 1.09004 * 109.47236 * 60.00645 * 1 2 3 31 31 H 1.09003 * 109.46654 * 180.02562 * 1 2 3 32 32 H 1.07995 * 119.91153 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.01275 * 180.30116 * 5 4 3 34 34 H 1.07997 * 119.99978 * 179.72484 * 7 6 5 35 35 H 1.08006 * 119.99705 * 359.97438 * 8 7 6 36 36 H 1.07994 * 120.04394 * 0.02562 * 12 11 9 37 37 H 1.07998 * 119.96196 * 180.21013 * 13 12 11 38 38 H 0.96998 * 119.99540 * 179.97438 * 19 18 16 39 39 H 1.08008 * 119.96119 * 179.97438 * 24 14 13 40 40 H 1.07998 * 120.04664 * 179.97438 * 25 24 14 41 41 H 1.08001 * 120.08987 * 180.29925 * 26 6 5 42 42 H 0.96707 * 114.00020 * 90.00543 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2870 2.3736 -0.0006 5 6 1.9062 3.6037 0.0057 6 6 3.3042 3.6832 -0.0001 7 6 3.9676 4.9937 -0.0003 8 6 3.2281 6.1260 -0.0003 9 6 3.8686 7.3912 0.0001 10 8 5.0847 7.4582 0.0056 11 6 3.0609 8.6276 -0.0005 12 6 1.6650 8.5526 -0.0131 13 6 0.9154 9.7069 -0.0086 14 6 1.5454 10.9477 -0.0020 15 8 0.8041 12.0827 -0.0029 16 6 1.4696 13.2482 0.1195 17 1 2.5495 13.2549 0.1304 18 6 0.7673 14.4396 0.2315 19 7 1.4165 15.5767 0.3515 20 14 -1.1006 14.4279 0.2134 21 1 -1.6083 14.2863 1.6018 22 1 -1.5980 15.7007 -0.3681 23 1 -1.5805 13.2875 -0.6079 24 6 2.9348 11.0261 0.0052 25 6 3.6907 9.8758 0.0053 26 6 4.0679 2.5095 -0.0001 27 6 3.4384 1.2807 0.0000 28 8 4.1769 0.1388 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2087 2.3134 -0.0006 33 1 1.3138 4.5067 0.0101 34 1 5.0459 5.0531 -0.0003 35 1 2.1497 6.0666 -0.0006 36 1 1.1753 7.5900 -0.0219 37 1 -0.1631 9.6498 -0.0149 38 1 0.9255 16.4096 0.4294 39 1 3.4206 11.9907 0.0100 40 1 4.7689 9.9373 0.0105 41 1 5.1465 2.5653 0.0003 42 1 4.3908 -0.1917 0.8828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089459720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -68.812362 kcal Electronic energy + Delta-G solvation = -26637.626095 eV Core-core repulsion = 22515.029888 eV Total energy + Delta-G solvation = -4122.596207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83732 -39.77187 -38.85574 -38.28656 -37.21441 -36.37199 -33.54956 -32.62972 -30.96347 -30.47913 -30.11702 -29.17910 -27.56265 -25.74257 -24.62035 -23.16205 -22.34015 -22.08613 -20.72950 -19.14590 -18.90117 -18.06244 -17.83647 -17.66237 -16.77714 -16.49919 -16.23787 -15.35991 -15.26474 -15.02253 -14.79731 -14.47369 -14.28904 -14.19597 -14.03547 -13.90320 -13.79759 -13.03022 -12.97686 -12.85995 -12.64037 -12.44755 -12.40423 -12.01546 -11.84210 -11.79681 -11.52759 -11.43703 -11.02066 -10.89898 -10.81412 -10.29495 -10.04051 -9.61339 -9.39605 -9.28495 -9.06144 -8.46598 -8.15173 -7.55937 -6.62349 -4.26712 0.14809 0.79961 1.28565 1.99145 2.05570 2.74239 3.08926 3.13620 3.19105 3.27240 3.53820 3.73591 4.06855 4.27312 4.28722 4.45336 4.52215 4.58517 4.67552 4.69652 4.81423 4.82461 4.92420 4.98692 5.03296 5.15075 5.36895 5.42910 5.50288 5.66355 5.69146 5.73736 5.82891 5.96097 6.04063 6.17299 6.32244 6.35400 6.36321 6.63161 6.72913 6.83260 6.98828 7.14363 7.31848 7.39959 7.61974 7.82005 8.00056 8.70507 9.30079 10.43693 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.001824 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.665977 B =15344.486068 C =16661.687046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.112 3.888 4 C -0.197 4.197 5 C -0.066 4.066 6 C -0.093 4.093 7 C -0.024 4.024 8 C -0.220 4.220 9 C 0.428 3.572 10 O -0.488 6.488 11 C -0.261 4.261 12 C -0.031 4.031 13 C -0.206 4.206 14 C 0.182 3.818 15 O -0.199 6.199 16 C -0.392 4.392 17 H 0.112 0.888 18 C 0.067 3.933 19 N -0.864 5.864 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.258 1.258 24 C -0.237 4.237 25 C -0.011 4.011 26 C -0.083 4.083 27 C 0.071 3.929 28 O -0.486 6.486 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.284 0.716 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 -28.192 1.008 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.065 3.935 4 C -0.216 4.216 5 C -0.084 4.084 6 C -0.094 4.094 7 C -0.043 4.043 8 C -0.239 4.239 9 C 0.314 3.686 10 O -0.372 6.372 11 C -0.263 4.263 12 C -0.049 4.049 13 C -0.225 4.225 14 C 0.126 3.874 15 O -0.102 6.102 16 C -0.467 4.467 17 H 0.129 0.871 18 C -0.139 4.139 19 N -0.500 5.500 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.182 1.182 24 C -0.256 4.256 25 C -0.029 4.029 26 C -0.102 4.102 27 C 0.025 3.975 28 O -0.295 6.295 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.618 -27.967 0.401 28.017 hybrid contribution -1.068 0.372 0.518 1.244 sum -2.686 -27.595 0.919 27.741 Atomic orbital electron populations 1.23148 0.78120 1.04270 1.01639 1.86110 1.21524 1.26266 1.88062 1.19709 0.91788 0.84980 0.97011 1.21132 1.00391 0.91631 1.08413 1.21329 0.93744 0.97588 0.95696 1.18874 0.92954 0.92773 1.04787 1.22472 1.00367 0.90196 0.91227 1.22710 1.01508 0.93950 1.05710 1.19054 0.88195 0.88859 0.72446 1.90602 1.16105 1.90228 1.40231 1.19831 0.93844 0.94022 1.18594 1.20825 0.92400 0.97029 0.94656 1.20146 0.99729 0.89807 1.12794 1.19393 0.90242 0.86699 0.91023 1.83494 1.36387 1.12967 1.77340 1.20905 0.93826 0.80497 1.51500 0.87095 1.24559 1.00755 0.93518 0.95087 1.69611 1.37249 0.98021 1.45092 0.86153 0.82895 0.78334 0.79417 1.19603 1.20483 1.18179 1.21250 0.93422 0.99499 1.11433 1.20977 0.99440 0.90915 0.91577 1.21503 1.00711 0.90066 0.97873 1.17573 0.86115 0.86576 1.07207 1.84916 1.71984 1.39191 1.33372 0.92386 0.92332 0.87988 0.84535 0.84502 0.84658 0.85193 0.86194 0.85965 0.90599 0.84408 0.86051 0.83986 0.75805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.65 10.26 -33.83 -0.35 -3.00 16 3 C 0.11 1.02 6.71 -38.88 -0.26 0.76 16 4 C -0.20 -1.55 9.01 -39.53 -0.36 -1.91 16 5 C -0.07 -0.56 9.40 -39.10 -0.37 -0.93 16 6 C -0.09 -0.89 5.87 -105.06 -0.62 -1.51 16 7 C -0.02 -0.26 9.42 -37.15 -0.35 -0.61 16 8 C -0.22 -2.67 8.73 -39.29 -0.34 -3.01 16 9 C 0.43 6.81 6.90 -34.36 -0.24 6.57 16 10 O -0.49 -8.96 16.11 5.10 0.08 -8.88 16 11 C -0.26 -4.51 5.88 -104.87 -0.62 -5.12 16 12 C -0.03 -0.48 9.42 -39.22 -0.37 -0.85 16 13 C -0.21 -3.74 9.97 -39.46 -0.39 -4.13 16 14 C 0.18 3.97 6.66 -38.90 -0.26 3.71 16 15 O -0.20 -4.95 8.57 0.79 0.01 -4.95 16 16 C -0.39 -10.50 9.94 30.92 0.31 -10.20 16 17 H 0.11 3.04 5.42 -52.49 -0.28 2.76 16 18 C 0.07 1.77 5.50 -17.51 -0.10 1.68 16 19 N -0.86 -23.79 13.96 55.48 0.77 -23.01 16 20 Si 0.91 20.42 28.62 -169.99 -4.86 15.56 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.24 -4.99 9.15 -39.46 -0.36 -5.35 16 25 C -0.01 -0.20 9.59 -39.21 -0.38 -0.58 16 26 C -0.08 -0.74 9.72 -38.98 -0.38 -1.12 16 27 C 0.07 0.66 6.71 -39.19 -0.26 0.40 16 28 O -0.49 -4.21 13.28 -34.39 -0.46 -4.67 16 29 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.14 0.76 6.27 -52.49 -0.33 0.43 16 33 H 0.14 0.95 6.15 -52.49 -0.32 0.63 16 34 H 0.14 1.49 7.45 -52.49 -0.39 1.10 16 35 H 0.13 1.26 4.23 -52.48 -0.22 1.03 16 36 H 0.12 1.39 6.19 -52.49 -0.32 1.07 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 38 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.14 3.02 5.62 -52.48 -0.29 2.73 16 40 H 0.12 2.20 7.64 -52.49 -0.40 1.80 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.39 1.56 9.07 45.56 0.41 1.98 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.13 366.42 -6.98 -39.12 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.36 Total: 5.42 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -4.35 Total: -21.11 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.77 Total: -23.01 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.71 Total: -21.50 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.86 Total: 15.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.13 -6.98 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089459720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.696 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds