Wall clock time and date at job start Tue Mar 31 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.38161 * 119.97571 * 104.99451 * 14 13 12 16 16 C 1.38709 * 119.95086 * 180.02562 * 15 14 13 17 17 O 1.35923 * 120.04116 * 180.02562 * 16 15 14 18 18 C 1.38742 * 119.91099 * 0.02562 * 16 15 14 19 19 C 1.38126 * 119.95381 * 359.97438 * 18 16 15 20 20 C 1.38319 * 119.97649 * 284.73126 * 14 13 12 21 21 Br 1.89097 * 119.95259 * 359.97438 * 20 14 13 22 22 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 23 23 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 24 24 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 26 26 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 27 27 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 28 28 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 29 29 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 30 30 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 31 31 H 1.07997 * 120.02779 * 0.03385 * 15 14 13 32 32 H 0.96696 * 113.99691 * 90.00336 * 17 16 15 33 33 H 1.07995 * 120.02412 * 179.97438 * 18 16 15 34 34 H 1.07997 * 119.97466 * 180.02562 * 19 18 16 35 35 H 1.09002 * 109.49350 * 303.14487 * 22 12 11 36 36 H 1.08999 * 109.49121 * 183.06761 * 22 12 11 37 37 H 1.08998 * 109.62394 * 350.89040 * 23 9 7 38 38 H 1.09003 * 109.62806 * 111.27869 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.1646 -5.0217 -5.0250 16 6 -1.2473 -4.8894 -5.8819 17 8 -1.0728 -4.3625 -7.1226 18 6 -2.5087 -5.2956 -5.4707 19 6 -2.6837 -5.8312 -4.2096 20 6 -1.6011 -5.9683 -3.3589 21 35 -1.8422 -6.7095 -1.6360 22 6 2.0052 -4.6207 -1.0114 23 6 1.8271 -3.6605 0.1695 24 1 -0.4850 0.8400 0.0004 25 1 -0.6889 -2.6172 -0.6930 26 1 0.0879 -1.3427 -1.6691 27 1 1.2905 -3.0222 -2.9917 28 1 -0.4418 -3.4325 -2.9953 29 1 1.7579 -5.5891 -3.3968 30 1 0.8077 -6.6863 -2.3663 31 1 0.8179 -4.7058 -5.3431 32 1 -0.8669 -5.0181 -7.8029 33 1 -3.3530 -5.1930 -6.1362 34 1 -3.6653 -6.1479 -3.8894 35 1 2.8210 -4.2714 -1.6443 36 1 2.2358 -5.6182 -0.6375 37 1 2.7786 -3.5350 0.6861 38 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:10 Heat of formation + Delta-G solvation = 25.015075 kcal Electronic energy + Delta-G solvation = -21938.583856 eV Core-core repulsion = 18635.488528 eV Total energy + Delta-G solvation = -3303.095328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12788 -38.14981 -36.82843 -34.47237 -32.11692 -31.63527 -30.61669 -29.82151 -28.59228 -27.08810 -24.73344 -22.72215 -22.62382 -22.42493 -21.04842 -19.03956 -18.10675 -16.75472 -16.31086 -16.12047 -15.40778 -15.19439 -14.48332 -14.33015 -14.15462 -13.73168 -13.40382 -13.19623 -13.02896 -12.72752 -12.59755 -12.23397 -11.74369 -11.46690 -11.36845 -11.03028 -10.73202 -10.71128 -10.54454 -10.42374 -10.24682 -10.03816 -9.85958 -9.71338 -9.54779 -9.00550 -8.49132 -8.44876 -7.72010 -6.60735 -5.72732 -3.14035 0.90744 1.11778 1.80698 3.32637 3.40954 3.47570 3.48856 3.94562 4.48798 4.55183 4.63284 4.71172 5.02619 5.22987 5.36556 5.43910 5.50706 5.52635 5.66724 5.82900 5.90956 5.95012 6.01381 6.17225 6.19774 6.26072 6.31493 6.39815 6.50097 6.59735 6.76720 6.99688 7.31337 7.43226 7.61881 7.72336 7.76282 7.87250 8.49051 9.26622 9.90310 10.49242 11.35845 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.004304 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.858695 B = 6504.063432 C = 7507.433730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.182 3.818 11 C 0.035 3.965 12 N -0.515 5.515 13 C 0.084 3.916 14 C -0.029 4.029 15 C -0.135 4.135 16 C 0.118 3.882 17 O -0.496 6.496 18 C -0.145 4.145 19 C -0.077 4.077 20 C -0.080 4.080 21 Br -0.031 7.031 22 C 0.046 3.954 23 C 0.150 3.850 24 H 0.253 0.747 25 H 0.027 0.973 26 H 0.086 0.914 27 H 0.022 0.978 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.390 0.610 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -17.313 -11.355 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.056 3.944 11 C -0.094 4.094 12 N -0.240 5.240 13 C -0.044 4.044 14 C -0.032 4.032 15 C -0.155 4.155 16 C 0.073 3.927 17 O -0.306 6.306 18 C -0.165 4.165 19 C -0.097 4.097 20 C -0.160 4.160 21 Br 0.055 6.945 22 C -0.083 4.083 23 C 0.023 3.977 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.929 -17.018 -10.054 20.372 hybrid contribution 1.173 0.927 -1.325 1.998 sum -3.756 -16.091 -11.379 20.062 Atomic orbital electron populations 1.70034 1.05181 1.25395 1.54098 1.25018 0.95282 0.98292 1.01114 0.86305 0.79092 0.83853 0.77621 1.21561 1.21766 1.20494 1.19193 0.92530 0.84860 1.41490 0.91704 1.44140 1.34389 1.01250 1.52037 1.20916 0.88919 0.96359 0.88239 1.23018 0.98476 0.89319 0.98576 1.62157 1.34562 1.05317 1.21977 1.21239 0.93075 0.98176 0.91901 1.19613 0.94195 0.95428 0.93916 1.21341 0.99434 1.00766 0.93997 1.18469 0.92315 0.95538 0.86387 1.84863 1.92883 1.36665 1.16209 1.21358 0.97292 1.00616 0.97200 1.20986 0.98066 0.97951 0.92739 1.21721 0.95412 1.05476 0.93396 1.96724 1.97143 1.81820 1.18823 1.22626 0.89337 0.99484 0.96874 1.20950 0.97738 0.86467 0.92502 0.93662 0.95525 0.89593 0.95959 0.92205 0.94355 0.89523 0.84906 0.75434 0.84797 0.84661 0.95470 0.91956 0.92725 0.95592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 11.16 55.49 0.62 -26.22 16 2 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 22.12 29.59 -169.99 -5.03 17.10 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 9 N -0.59 -15.38 3.03 -171.73 -0.52 -15.90 16 10 C 0.18 4.55 5.45 -3.36 -0.02 4.53 16 11 C 0.04 0.72 5.13 -3.46 -0.02 0.70 16 12 N -0.52 -9.18 4.54 -235.46 -1.07 -10.25 16 13 C 0.08 1.21 4.67 -4.98 -0.02 1.19 16 14 C -0.03 -0.40 3.46 -104.62 -0.36 -0.76 16 15 C -0.14 -1.74 8.96 -39.44 -0.35 -2.09 16 16 C 0.12 1.39 6.70 -39.22 -0.26 1.12 16 17 O -0.50 -5.14 13.50 -19.50 -0.26 -5.41 16 18 C -0.15 -1.59 9.99 -39.44 -0.39 -1.98 16 19 C -0.08 -0.90 9.78 -39.58 -0.39 -1.29 16 20 C -0.08 -1.08 6.22 -39.50 -0.25 -1.32 16 21 Br -0.03 -0.43 31.92 -68.01 -2.17 -2.60 16 22 C 0.05 0.83 5.58 -3.70 -0.02 0.81 16 23 C 0.15 3.24 6.69 -3.60 -0.02 3.22 16 24 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.19 6.11 -51.93 -0.32 0.87 16 29 H 0.04 0.53 7.89 -51.93 -0.41 0.12 16 30 H 0.09 1.17 7.38 -51.93 -0.38 0.79 16 31 H 0.13 1.61 8.00 -52.49 -0.42 1.19 16 32 H 0.39 1.92 9.06 45.56 0.41 2.33 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 37 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -31.87 327.75 -10.19 -42.05 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.35 Total: -0.60 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.34 Total: -3.11 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.97 Total: -52.37 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.26 Total: -5.41 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.17 Total: -2.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.87 -10.19 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.070 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds