Wall clock time and date at job start Tue Mar 31 2020 05:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38444 * 110.99686 * 176.80840 * 14 13 12 16 16 N 1.32487 * 119.20264 * 123.53063 * 15 14 13 17 17 C 1.32275 * 120.75406 * 179.75871 * 16 15 14 18 18 C 1.38689 * 119.18407 * 0.50718 * 17 16 15 19 19 Br 1.89093 * 120.73099 * 179.72721 * 18 17 16 20 20 C 1.38681 * 118.53443 * 359.74786 * 18 17 16 21 21 N 1.32274 * 119.18768 * 0.02562 * 20 18 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.08001 * 120.41284 * 180.25760 * 17 16 15 34 34 H 1.08000 * 120.40387 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 36 36 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 37 37 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 38 38 H 1.08997 * 109.48515 * 63.19455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1692 -8.7435 0.9102 16 7 0.2461 -9.5292 -0.1538 17 6 -0.3989 -10.6834 -0.1903 18 6 -1.1703 -11.0618 0.8984 19 35 -2.1168 -12.6988 0.8897 20 6 -1.2325 -10.2129 1.9932 21 7 -0.5589 -9.0749 1.9662 22 6 1.6048 -7.3594 -0.3380 23 6 2.4174 -6.0649 -0.2600 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.4682 -5.1797 2.0700 30 1 0.0938 -4.2759 1.3889 31 1 -0.7649 -6.3431 0.3437 32 1 -0.5751 -6.5686 2.0993 33 1 -0.3291 -11.3215 -1.0588 34 1 -1.8237 -10.4778 2.8574 35 1 0.9039 -7.2992 -1.1706 36 1 2.2783 -8.2029 -0.4899 37 1 2.9469 -5.9105 -1.2002 38 1 3.1372 -6.1355 0.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095356522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:27 Heat of formation + Delta-G solvation = 77.092976 kcal Electronic energy + Delta-G solvation = -20958.807982 eV Core-core repulsion = 17690.263672 eV Total energy + Delta-G solvation = -3268.544310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.059 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61850 -39.07781 -35.95374 -34.23525 -33.29584 -32.61155 -30.95291 -30.37180 -29.10269 -26.50634 -25.38074 -23.96930 -23.30055 -22.78808 -20.46131 -19.72577 -18.19937 -18.02329 -16.47176 -15.92385 -15.75491 -15.06268 -14.81109 -14.61285 -14.58337 -14.29017 -14.05650 -13.99682 -13.58965 -12.71319 -12.29162 -11.99705 -11.75783 -11.51578 -11.36240 -11.33552 -11.12405 -11.07587 -10.97001 -10.94004 -10.71159 -10.55203 -10.06734 -9.84234 -9.53704 -9.36807 -9.15512 -8.59080 -8.34267 -7.82439 -6.00951 -4.03426 0.34551 0.67578 1.08259 2.86305 3.30525 3.32911 3.37435 3.39629 3.70984 4.06838 4.29577 4.30888 4.44588 4.50503 4.91551 5.09929 5.13254 5.33723 5.35702 5.40184 5.46182 5.48891 5.73749 5.85873 6.00854 6.09515 6.16746 6.25532 6.33777 6.41639 6.53558 6.87608 6.92300 7.40679 7.47722 7.72934 7.74808 7.85872 8.05028 8.41222 9.03362 9.60278 11.10349 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.043122 B = 0.001933 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.159224 B =14484.530544 C =14805.448331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.542 5.542 12 C 0.056 3.944 13 C 0.071 3.929 14 N -0.458 5.458 15 C 0.513 3.487 16 N -0.543 5.543 17 C 0.212 3.788 18 C -0.249 4.249 19 Br -0.025 7.025 20 C 0.212 3.788 21 N -0.523 5.523 22 C 0.073 3.927 23 C 0.052 3.948 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -28.498 1.966 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.267 5.267 12 C -0.073 4.073 13 C -0.054 4.054 14 N -0.177 5.177 15 C 0.159 3.841 16 N -0.263 5.263 17 C 0.042 3.958 18 C -0.335 4.335 19 Br 0.059 6.941 20 C 0.042 3.958 21 N -0.241 5.241 22 C -0.054 4.054 23 C -0.077 4.077 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.108 -27.939 1.961 28.307 hybrid contribution 0.401 0.359 0.176 0.566 sum -3.707 -27.580 2.137 27.910 Atomic orbital electron populations 1.69958 1.06020 1.26722 1.50519 1.24992 0.94840 0.99188 0.95273 0.86651 0.79570 0.83120 0.78598 1.20238 1.21289 1.20281 1.21146 0.92956 0.91028 1.51057 0.92822 1.19093 0.93964 0.90100 0.97761 1.22339 0.96769 0.87939 0.99224 1.62320 1.27797 1.02778 1.33769 1.22227 0.97837 0.95991 0.91227 1.22414 0.93177 0.87252 1.02591 1.58610 1.24001 0.99699 1.35374 1.21334 0.85969 0.92474 0.84367 1.68587 1.25144 1.06448 1.26125 1.23142 0.86244 0.90656 0.95771 1.23474 1.09002 0.98790 1.02234 1.96745 1.73716 1.24672 1.99011 1.23174 0.90772 0.86187 0.95704 1.68200 1.10723 1.18437 1.26716 1.22208 0.97190 0.98214 0.87778 1.22227 0.94218 0.89767 1.01496 0.92924 0.96500 0.95717 0.91874 0.95917 0.94068 0.88106 0.92499 0.88565 0.80719 0.80532 0.91663 0.89415 0.89654 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.72 4.91 -27.88 -0.14 0.58 16 10 C 0.06 1.31 4.90 -3.83 -0.02 1.29 16 11 N -0.54 -9.60 4.71 -234.47 -1.10 -10.70 16 12 C 0.06 0.92 5.41 -3.77 -0.02 0.90 16 13 C 0.07 1.03 5.46 -3.76 -0.02 1.01 16 14 N -0.46 -6.47 4.77 -175.23 -0.84 -7.31 16 15 C 0.51 6.86 7.17 -322.78 -2.32 4.54 16 16 N -0.54 -6.57 8.70 -13.90 -0.12 -6.69 16 17 C 0.21 1.97 11.08 -17.19 -0.19 1.78 16 18 C -0.25 -2.16 6.27 -39.25 -0.25 -2.40 16 19 Br -0.02 -0.17 33.76 -68.01 -2.30 -2.47 16 20 C 0.21 2.01 11.08 -17.20 -0.19 1.82 16 21 N -0.52 -6.53 9.72 -13.91 -0.14 -6.67 16 22 C 0.07 0.98 4.76 -3.77 -0.02 0.96 16 23 C 0.05 0.76 5.61 -3.77 -0.02 0.73 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.45 6.49 -51.93 -0.34 0.11 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.82 6.34 -51.93 -0.33 1.50 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.31 7.64 -51.93 -0.40 0.92 16 33 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 36 H 0.09 1.08 7.81 -51.93 -0.41 0.68 16 37 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -30.65 332.28 -12.58 -43.23 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.22 Total: -2.84 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.59 Total: -2.16 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.46 Total: -57.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.65 -12.58 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095356522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.323 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds