Wall clock time and date at job start Tue Mar 31 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38444 * 110.99686 * 176.80840 * 14 13 12 16 16 N 1.32487 * 119.20264 * 123.53063 * 15 14 13 17 17 C 1.32275 * 120.75406 * 179.75871 * 16 15 14 18 18 C 1.38689 * 119.18407 * 0.50718 * 17 16 15 19 19 Br 1.89093 * 120.73099 * 179.72721 * 18 17 16 20 20 C 1.38681 * 118.53443 * 359.74786 * 18 17 16 21 21 N 1.32274 * 119.18768 * 0.02562 * 20 18 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.08001 * 120.41284 * 180.25760 * 17 16 15 34 34 H 1.08000 * 120.40387 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 36 36 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 37 37 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 38 38 H 1.08997 * 109.48515 * 63.19455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1692 -8.7435 0.9102 16 7 0.2461 -9.5292 -0.1538 17 6 -0.3989 -10.6834 -0.1903 18 6 -1.1703 -11.0618 0.8984 19 35 -2.1168 -12.6988 0.8897 20 6 -1.2325 -10.2129 1.9932 21 7 -0.5589 -9.0749 1.9662 22 6 1.6048 -7.3594 -0.3380 23 6 2.4174 -6.0649 -0.2600 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.4682 -5.1797 2.0700 30 1 0.0938 -4.2759 1.3889 31 1 -0.7649 -6.3431 0.3437 32 1 -0.5751 -6.5686 2.0993 33 1 -0.3291 -11.3215 -1.0588 34 1 -1.8237 -10.4778 2.8574 35 1 0.9039 -7.2992 -1.1706 36 1 2.2783 -8.2029 -0.4899 37 1 2.9469 -5.9105 -1.2002 38 1 3.1372 -6.1355 0.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095356522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:26 Heat of formation + Delta-G solvation = 58.302907 kcal Electronic energy + Delta-G solvation = -20959.622781 eV Core-core repulsion = 17690.263672 eV Total energy + Delta-G solvation = -3269.359109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.059 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49327 -40.25080 -37.26944 -35.13369 -35.07034 -33.66845 -32.20617 -31.80273 -30.23527 -27.94802 -26.27519 -25.65049 -24.46199 -23.85179 -22.14289 -21.02389 -19.18793 -18.89171 -18.48643 -16.89834 -16.70361 -16.54757 -16.17211 -16.06516 -15.69482 -15.44180 -15.38488 -14.99086 -14.70706 -14.26245 -14.15588 -13.33606 -13.17257 -12.82785 -12.64752 -12.57887 -12.42220 -12.30605 -12.22279 -12.16887 -12.03955 -11.76317 -11.61681 -11.29161 -11.21927 -10.88036 -10.51910 -10.33038 -9.51958 -9.25936 -8.18575 -6.29450 -0.47868 -0.08417 0.39231 1.41535 1.44436 1.52228 1.92362 2.41295 2.46393 2.91064 2.98732 3.15020 3.35561 3.43430 3.71199 3.78142 3.94053 4.08297 4.13639 4.31108 4.44272 4.50758 4.56117 4.64916 4.73056 4.74089 4.85935 4.88818 5.02470 5.09822 5.37252 5.43902 5.47873 5.66236 5.77953 5.95146 6.07203 6.21467 6.31399 6.86826 6.87443 7.39402 8.93226 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.043122 B = 0.001933 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.159224 B =14484.530544 C =14805.448331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.081 3.919 11 N -0.553 5.553 12 C 0.061 3.939 13 C 0.086 3.914 14 N -0.468 5.468 15 C 0.496 3.504 16 N -0.556 5.556 17 C 0.207 3.793 18 C -0.240 4.240 19 Br -0.001 7.001 20 C 0.207 3.793 21 N -0.544 5.544 22 C 0.084 3.916 23 C 0.054 3.946 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.008 1.008 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.204 0.796 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 -30.096 1.919 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.046 4.046 11 N -0.278 5.278 12 C -0.068 4.068 13 C -0.040 4.040 14 N -0.187 5.187 15 C 0.140 3.860 16 N -0.277 5.277 17 C 0.038 3.962 18 C -0.325 4.325 19 Br 0.082 6.918 20 C 0.038 3.962 21 N -0.262 5.262 22 C -0.043 4.043 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.221 0.779 34 H 0.221 0.779 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.433 -29.595 1.914 29.855 hybrid contribution 0.075 0.663 0.190 0.694 sum -3.358 -28.932 2.104 29.202 Atomic orbital electron populations 1.70101 1.07779 1.27786 1.51442 1.25949 0.95742 1.03269 0.94712 0.85504 0.78252 0.78121 0.79173 1.19149 1.20956 1.19205 1.21600 0.93554 0.92249 1.50850 0.92110 1.18919 0.94217 0.91841 0.95143 1.21967 0.95377 0.87814 0.99452 1.62220 1.28413 1.02718 1.34423 1.22112 0.97467 0.96395 0.90806 1.22160 0.92656 0.86679 1.02514 1.58589 1.24397 0.99886 1.35837 1.21276 0.87065 0.92421 0.85193 1.68565 1.25890 1.07381 1.25815 1.23656 0.85543 0.90100 0.96862 1.23605 1.08092 0.99276 1.01571 1.96788 1.73077 1.22963 1.98960 1.23667 0.90300 0.85405 0.96837 1.68182 1.11332 1.19910 1.26787 1.22092 0.96960 0.97812 0.87396 1.22296 0.93916 0.88959 1.02191 0.92802 0.98583 0.98918 0.91272 0.95893 0.94100 0.90523 0.93551 0.87912 0.77930 0.77912 0.92574 0.87938 0.88329 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 1.92 4.91 29.85 0.15 2.06 16 10 C 0.08 3.39 4.90 86.30 0.42 3.81 16 11 N -0.55 -19.88 4.71 -895.72 -4.22 -24.10 16 12 C 0.06 2.08 5.41 86.31 0.47 2.55 16 13 C 0.09 2.53 5.46 86.31 0.47 3.00 16 14 N -0.47 -13.04 4.77 -708.31 -3.38 -16.42 16 15 C 0.50 12.85 7.17 261.48 1.88 14.73 16 16 N -0.56 -12.72 8.70 -197.90 -1.72 -14.44 16 17 C 0.21 3.43 11.08 84.73 0.94 4.37 16 18 C -0.24 -3.63 6.27 22.48 0.14 -3.49 16 19 Br 0.00 -0.01 33.76 -20.37 -0.69 -0.70 16 20 C 0.21 3.55 11.08 84.73 0.94 4.49 16 21 N -0.54 -13.06 9.72 -197.91 -1.92 -14.99 16 22 C 0.08 2.19 4.76 86.31 0.41 2.60 16 23 C 0.05 1.55 5.61 86.31 0.48 2.03 16 24 H 0.26 15.13 8.31 -92.70 -0.77 14.35 16 25 H 0.00 -0.23 6.49 -2.38 -0.02 -0.25 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.07 2.78 8.03 -2.38 -0.02 2.77 16 28 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 2.97 6.34 -2.39 -0.02 2.95 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 2.86 7.64 -2.39 -0.02 2.84 16 33 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.06 1.56 8.03 -2.39 -0.02 1.54 16 36 H 0.10 2.37 7.81 -2.39 -0.02 2.36 16 37 H 0.10 2.53 8.07 -2.39 -0.02 2.51 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.56 332.28 -1.57 -68.13 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.06 Total: 6.80 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.99 Total: 6.02 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -10.96 Total: -126.48 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.70 kcal Total: -66.56 -1.57 -68.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095356522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.429 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds