Wall clock time and date at job start Tue Mar 31 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35653 * 117.00359 * 2 1 4 4 C 1.38708 * 120.14898 * 359.97438 * 3 2 1 5 5 C 1.38048 * 120.08385 * 180.23412 * 4 3 2 6 6 C 1.38551 * 120.39129 * 359.48763 * 5 4 3 7 7 C 1.50700 * 119.85048 * 180.26074 * 6 5 4 8 8 C 1.37786 * 120.29977 * 0.51195 * 6 5 4 9 9 C 1.39707 * 119.90600 * 359.74847 * 8 6 5 10 10 C 1.47540 * 120.19020 * 180.02562 * 9 8 6 11 11 O 1.21587 * 119.99997 * 125.96844 * 10 9 8 12 12 N 1.34777 * 119.99581 * 305.96501 * 10 9 8 13 13 C 1.46495 * 120.00385 * 4.65796 * 12 10 9 14 14 C 1.50700 * 109.47160 * 95.78175 * 13 12 10 15 15 H 1.07997 * 120.00554 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99681 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99742 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00261 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47370 * 89.99785 * 18 16 14 20 20 H 1.48502 * 109.46902 * 209.99724 * 18 16 14 21 21 H 1.48497 * 109.46656 * 329.99172 * 18 16 14 22 22 C 1.46508 * 119.99475 * 184.65058 * 12 10 9 23 23 C 1.50703 * 109.46661 * 90.00304 * 22 12 10 24 24 C 1.38674 * 120.41989 * 269.71789 * 23 22 12 25 25 C 1.38626 * 118.41715 * 179.78723 * 24 23 22 26 26 C 1.38226 * 119.16213 * 0.51155 * 25 24 23 27 27 N 1.31856 * 120.76540 * 359.72631 * 26 25 24 28 28 C 1.31882 * 121.72485 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47159 * 299.99968 * 1 2 3 31 31 H 1.09004 * 109.47047 * 60.00264 * 1 2 3 32 32 H 1.08005 * 119.95383 * 359.95575 * 4 3 2 33 33 H 1.08008 * 119.80592 * 179.74349 * 5 4 3 34 34 H 1.09002 * 109.46585 * 270.25264 * 7 6 5 35 35 H 1.08998 * 109.47353 * 30.25151 * 7 6 5 36 36 H 1.08998 * 109.46931 * 150.25333 * 7 6 5 37 37 H 1.07998 * 120.04681 * 179.76917 * 8 6 5 38 38 H 1.08995 * 109.46931 * 215.78283 * 13 12 10 39 39 H 1.09005 * 109.46961 * 335.78455 * 13 12 10 40 40 H 0.96997 * 119.99859 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46915 * 210.00292 * 22 12 10 42 42 H 1.09000 * 109.47205 * 330.00622 * 22 12 10 43 43 H 1.07994 * 120.78735 * 0.02562 * 24 23 22 44 44 H 1.07996 * 120.41858 * 180.22339 * 25 24 23 45 45 H 1.08002 * 119.61677 * 179.75286 * 26 25 24 46 46 H 1.07999 * 119.61748 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0005 5 6 1.9207 3.6032 -0.0054 6 6 3.3039 3.6835 0.0009 7 6 3.9769 5.0319 0.0014 8 6 4.0669 2.5362 0.0015 9 6 3.4442 1.2856 0.0010 10 6 4.2551 0.0530 0.0022 11 8 4.0715 -0.7946 0.8543 12 7 5.1992 -0.1333 -0.9415 13 6 5.4908 0.9301 -1.9060 14 6 6.6683 1.7372 -1.4231 15 1 7.1514 1.4832 -0.4912 16 6 7.1294 2.7993 -2.1716 17 7 8.1567 3.5040 -1.7500 18 14 6.2943 3.2382 -3.7839 19 1 5.2044 4.2135 -3.5274 20 1 7.2887 3.8390 -4.7089 21 1 5.7263 2.0108 -4.3972 22 6 5.9339 -1.3994 -1.0024 23 6 5.2027 -2.3615 -1.9028 24 6 4.2450 -3.2195 -1.3833 25 6 3.5946 -4.0844 -2.2498 26 6 3.9274 -4.0703 -3.5913 27 7 4.8471 -3.2439 -4.0494 28 6 5.4825 -2.4043 -3.2553 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2139 2.3194 -0.0017 33 1 1.3305 4.5077 -0.0100 34 1 4.1399 5.3569 -1.0262 35 1 3.3426 5.7545 0.5148 36 1 4.9351 4.9595 0.5159 37 1 5.1447 2.6036 0.0026 38 1 5.7258 0.4879 -2.8741 39 1 4.6210 1.5796 -2.0047 40 1 8.4810 4.2514 -2.2764 41 1 6.9339 -1.2204 -1.3976 42 1 6.0094 -1.8242 -0.0015 43 1 4.0089 -3.2114 -0.3296 44 1 2.8407 -4.7638 -1.8806 45 1 3.4282 -4.7438 -4.2722 46 1 6.2295 -1.7419 -3.6671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095400061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:23 Heat of formation + Delta-G solvation = -6.299014 kcal Electronic energy + Delta-G solvation = -30380.540101 eV Core-core repulsion = 26428.780521 eV Total energy + Delta-G solvation = -3951.759579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39324 -39.88334 -38.54104 -37.29363 -35.28148 -33.13170 -32.26562 -31.78975 -31.42616 -30.62340 -28.20078 -27.67634 -26.26431 -25.62328 -23.42358 -23.34138 -22.40341 -21.81320 -20.92666 -18.79062 -17.67434 -17.15112 -16.82935 -16.54008 -16.22814 -15.81680 -15.68676 -15.42461 -15.06665 -14.36832 -14.31572 -14.03392 -13.77863 -13.64363 -13.38825 -13.31320 -13.02154 -12.88970 -12.71603 -12.48590 -12.16925 -11.98281 -11.82801 -11.74875 -11.60438 -11.30696 -11.21547 -11.04623 -10.80468 -10.71651 -10.52868 -10.33612 -9.73529 -9.60037 -9.28071 -9.24968 -8.79852 -8.76876 -8.50651 -7.85732 -7.73122 -6.28732 -4.30225 1.27448 1.42082 1.50953 1.74262 3.14977 3.23679 3.27497 3.32583 3.43688 3.69306 4.08471 4.19813 4.22649 4.63682 4.91206 4.98963 5.01437 5.08415 5.12300 5.14603 5.16390 5.24170 5.29003 5.31966 5.44389 5.48666 5.61464 5.67508 5.78016 5.87808 6.03611 6.04866 6.06649 6.18662 6.30056 6.33927 6.39306 6.42586 6.50511 6.59121 6.64334 6.68871 6.91086 6.97169 7.20313 7.25665 7.39323 7.58802 8.04056 8.15601 8.34753 8.74738 8.87318 9.31036 10.82566 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.006012 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.893205 B = 4656.295652 C = 6908.414045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.157 3.843 4 C -0.224 4.224 5 C -0.068 4.068 6 C -0.132 4.132 7 C -0.106 4.106 8 C -0.032 4.032 9 C -0.152 4.152 10 C 0.575 3.425 11 O -0.553 6.553 12 N -0.581 5.581 13 C 0.204 3.796 14 C -0.543 4.543 15 H 0.083 0.917 16 C 0.085 3.915 17 N -0.884 5.884 18 Si 0.860 3.140 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.161 3.839 23 C -0.145 4.145 24 C -0.053 4.053 25 C -0.180 4.180 26 C 0.089 3.911 27 N -0.491 5.491 28 C 0.112 3.888 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.171 0.829 38 H 0.031 0.969 39 H 0.036 0.964 40 H 0.268 0.732 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.149 0.851 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 -5.068 0.702 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.110 3.890 4 C -0.242 4.242 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.163 4.163 8 C -0.050 4.050 9 C -0.156 4.156 10 C 0.363 3.637 11 O -0.432 6.432 12 N -0.311 5.311 13 C 0.083 3.917 14 C -0.581 4.581 15 H 0.101 0.899 16 C -0.120 4.120 17 N -0.521 5.521 18 Si 0.686 3.314 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.188 1.188 22 C 0.038 3.962 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.200 4.200 26 C -0.068 4.068 27 N -0.199 5.199 28 C -0.045 4.045 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.188 0.812 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.167 0.833 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.409 -5.547 0.192 13.594 hybrid contribution -0.962 0.622 -0.168 1.158 sum -13.371 -4.924 0.024 14.249 Atomic orbital electron populations 1.23017 0.79105 1.03589 1.00990 1.86148 1.20637 1.26652 1.88055 1.18914 0.90842 0.84328 0.94885 1.20987 0.99477 0.92090 1.11676 1.20892 0.94112 0.96665 0.97000 1.19808 0.93189 0.96003 1.04261 1.20689 1.00569 0.92653 1.02364 1.21997 1.03087 0.89087 0.90798 1.19209 0.90247 0.94886 1.11210 1.17953 0.79382 0.85465 0.80881 1.90671 1.69282 1.45440 1.37830 1.47807 1.36268 1.15052 1.31948 1.19945 0.97384 0.86055 0.88317 1.21320 1.13896 1.13431 1.09439 0.89943 1.24786 0.94388 0.95622 0.97155 1.69883 1.24263 1.19325 1.38599 0.87079 0.80024 0.79803 0.84502 1.19522 1.20793 1.18760 1.20155 0.94587 0.82516 0.98988 1.21453 0.98898 0.98110 0.96357 1.21668 0.92840 0.92563 1.00878 1.22093 1.01744 1.01076 0.95039 1.22681 0.94174 0.96245 0.93720 1.67691 1.07580 1.05180 1.39449 1.22787 0.97173 0.94884 0.89688 0.88573 0.92796 0.92960 0.85588 0.86076 0.91478 0.92353 0.90896 0.81176 0.95123 0.94636 0.92238 0.88560 0.89369 0.84427 0.85261 0.83321 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.30 -5.20 9.69 -22.01 -0.21 -5.41 16 3 C 0.16 2.82 6.68 -38.69 -0.26 2.56 16 4 C -0.22 -3.33 9.03 -39.48 -0.36 -3.69 16 5 C -0.07 -1.01 9.68 -39.54 -0.38 -1.39 16 6 C -0.13 -2.25 5.87 -104.67 -0.61 -2.86 16 7 C -0.11 -1.61 10.00 36.01 0.36 -1.25 16 8 C -0.03 -0.63 7.32 -39.20 -0.29 -0.91 16 9 C -0.15 -3.07 4.73 -104.84 -0.50 -3.57 16 10 C 0.57 12.33 6.84 -12.47 -0.09 12.25 16 11 O -0.55 -12.58 16.19 1.94 0.03 -12.55 16 12 N -0.58 -11.97 2.44 -177.66 -0.43 -12.40 16 13 C 0.20 4.48 3.75 -5.20 -0.02 4.46 16 14 C -0.54 -13.37 7.58 -34.44 -0.26 -13.63 16 15 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 16 C 0.09 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.88 -24.11 13.96 55.43 0.77 -23.34 16 18 Si 0.86 19.37 27.47 -169.99 -4.67 14.70 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 22 C 0.16 2.90 5.61 -5.19 -0.03 2.87 16 23 C -0.14 -2.42 5.48 -104.48 -0.57 -2.99 16 24 C -0.05 -0.82 9.86 -39.28 -0.39 -1.21 16 25 C -0.18 -2.38 10.11 -39.44 -0.40 -2.78 16 26 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 27 N -0.49 -7.98 10.36 -13.25 -0.14 -8.12 16 28 C 0.11 1.85 10.86 -17.55 -0.19 1.66 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 31 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 32 H 0.13 1.47 6.30 -52.48 -0.33 1.14 16 33 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.17 3.74 5.40 -52.49 -0.28 3.46 16 38 H 0.03 0.67 7.17 -51.93 -0.37 0.30 16 39 H 0.04 0.80 5.09 -51.93 -0.26 0.54 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.10 1.66 8.02 -51.93 -0.42 1.25 16 42 H 0.09 1.57 7.31 -51.93 -0.38 1.19 16 43 H 0.14 2.17 7.94 -52.49 -0.42 1.76 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -30.57 384.34 -8.36 -38.93 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.23 Total: 8.47 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.28 Total: -6.08 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.20 Total: -43.86 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.18 Total: -17.96 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.57 -8.36 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095400061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.635 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds